TSNAXIP1

gene
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Also known as TXI1

Summary

TSNAXIP1 (translin associated factor X interacting protein 1, HGNC:18586) is a protein-coding gene on chromosome 16q22.1, encoding Translin-associated factor X-interacting protein 1 (Q2TAA8). Possible role in spermatogenesis.

Predicted to be involved in cell differentiation and spermatogenesis. Predicted to be located in perinuclear region of cytoplasm. Predicted to be active in cytoplasm.

Source: NCBI Gene 55815 — RefSeq curated summary.

At a glance

  • GWAS associations: 8
  • Clinical variants (ClinVar): 130 total
  • MANE Select transcript: NM_001288990

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:18586
Approved symbolTSNAXIP1
Nametranslin associated factor X interacting protein 1
Location16q22.1
Locus typegene with protein product
StatusApproved
AliasesTXI1
Ensembl geneENSG00000102904
Ensembl biotypeprotein_coding
OMIM607720
Entrez55815

Gene structure

Transcript identifiers

Ensembl transcripts: 17 — 8 protein_coding, 4 nonsense_mediated_decay, 4 retained_intron, 1 protein_coding_CDS_not_defined

ENST00000388833, ENST00000415766, ENST00000431934, ENST00000466164, ENST00000487120, ENST00000561639, ENST00000561654, ENST00000562321, ENST00000562633, ENST00000563363, ENST00000565148, ENST00000565339, ENST00000565558, ENST00000567852, ENST00000568990, ENST00000569504, ENST00000885113

RefSeq mRNA: 7 — MANE Select: NM_001288990 NM_001288990, NM_001288991, NM_001288992, NM_001288993, NM_001288994, NM_001351158, NM_018430

CCDS: CCDS10846, CCDS73903, CCDS73904

Canonical transcript exons

ENST00000561639 — 16 exons

ExonStartEnd
ENSE000017108976782566767825836
ENSE000017219526782591767826076
ENSE000026261896780688967807196
ENSE000034604836782747367827579
ENSE000034684026782724967827375
ENSE000034853036782362667823719
ENSE000035123996782775367828068
ENSE000035329606782513767825272
ENSE000035373276782696367827072
ENSE000035543736782643767826562
ENSE000035764016781430267814401
ENSE000036066396782109967821225
ENSE000036209616782669267826844
ENSE000036465026782083967820951
ENSE000036618776782458367824779
ENSE000036747706782615267826282

Expression profiles

Bgee: expression breadth ubiquitous, 182 present calls, max score 96.03.

FANTOM5 (CAGE): breadth broad, TPM avg 1.4834 / max 120.4397, expressed in 605 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter IDTPM avgSamples expressed
1546781.0346532
1546790.4488147

Top tissues by expression

275 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
right uterine tubeUBERON:000130296.03gold quality
left testisUBERON:000453391.72gold quality
right testisUBERON:000453491.68gold quality
epithelium of bronchusUBERON:000203190.59gold quality
bronchial epithelial cellCL:000232890.26gold quality
testisUBERON:000047389.28gold quality
bronchusUBERON:000218589.21gold quality
spermCL:000001988.05gold quality
olfactory segment of nasal mucosaUBERON:000538687.31gold quality
male germ cellCL:000001585.85gold quality
adenohypophysisUBERON:000219685.20gold quality
pituitary glandUBERON:000000784.77gold quality
male germ line stem cell (sensu Vertebrata) in testisCL:0000089 ∩ UBERON:000047380.99gold quality
right frontal lobeUBERON:000281080.30gold quality
caudate nucleusUBERON:000187380.11gold quality
nucleus accumbensUBERON:000188280.01gold quality
mucosa of paranasal sinusUBERON:000503077.55gold quality
anterior cingulate cortexUBERON:000983576.90gold quality
cingulate cortexUBERON:000302776.79gold quality
Brodmann (1909) area 9UBERON:001354076.67gold quality
ventricular zoneUBERON:000305375.93gold quality
right hemisphere of cerebellumUBERON:001489075.86gold quality
putamenUBERON:000187475.73gold quality
right adrenal gland cortexUBERON:003582775.49gold quality
cortical plateUBERON:000534375.45gold quality
dorsolateral prefrontal cortexUBERON:000983475.14gold quality
hypothalamusUBERON:000189875.12gold quality
prefrontal cortexUBERON:000045175.10gold quality
right adrenal glandUBERON:000123375.09gold quality
tendon of biceps brachiiUBERON:000818875.09silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

ExperimentMarker?Max mean expression
E-ANND-3yes6.25

Regulation

Is transcription factor: no

Literature-anchored findings (GeneRIF, showing 1)

  • rs1630250 was associated in males w/ methamphetamine dependence in allele analysis. results not significant after Bonferroni correction. findings suggest TSNAX does not play a role in methamphetamine dependence in Japanese population (PMID:21683752)

Cross-species orthologs

2 orthologs

OrganismSymbolGene ID
mus_musculusTsnaxip1ENSMUSG00000031893
rattus_norvegicusTsnaxip1ENSRNOG00000018954

Protein

Protein identifiers

Translin-associated factor X-interacting protein 1Q2TAA8 (reviewed: Q2TAA8)

All UniProt accessions (11): Q2TAA8, B4DXD0, E7ENJ7, H3BNS9, H3BNU6, H3BQ72, I3L1M2, J3KQF4, J3QQL6, J3QS50, J3QSH8

UniProt curated annotations — full annotation on UniProt →

Function. Possible role in spermatogenesis.

Subunit / interactions. Interacts with TSNAX.

Subcellular location. Cytoplasm. Perinuclear region.

Isoforms (2)

UniProt IDNamesCanonical?
Q2TAA8-11yes
Q2TAA8-22

RefSeq proteins (7): NP_001275919, NP_001275920, NP_001275921, NP_001275922, NP_001275923, NP_001338087, NP_060900 (=MANE)

Domains & families (InterPro)

IDNameType
IPR032755TSNAXIP1_NDomain

Pfam: PF15739

UniProt features (4 total): coiled-coil region 2, chain 1, splice variant 1

Structure

Experimental structures (PDB)

0 structures.

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-Q2TAA8-F184.480.56

Function

Pathways and Gene Ontology

Reactome pathways

0 pathways

MSigDB gene sets: 83 (showing top): CREL_01, chr16q22, GAUSSMANN_MLL_AF4_FUSION_TARGETS_C_UP, MODULE_511, AACYNNNNTTCCS_UNKNOWN, GOBP_MALE_GAMETE_GENERATION, GGAMTNNNNNTCCY_UNKNOWN, SP1_Q2_01, NFKB_C, GOBP_DEVELOPMENTAL_PROCESS_INVOLVED_IN_REPRODUCTION, RFX1_02, AP1FJ_Q2, MARSON_BOUND_BY_FOXP3_STIMULATED, MOREAUX_MULTIPLE_MYELOMA_BY_TACI_UP, DODD_NASOPHARYNGEAL_CARCINOMA_DN

GO Biological Process (2): spermatogenesis (GO:0007283), cell differentiation (GO:0030154)

GO Molecular Function (1): protein binding (GO:0005515)

GO Cellular Component (2): cytoplasm (GO:0005737), perinuclear region of cytoplasm (GO:0048471)

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
cellular anatomical structure2
developmental process involved in reproduction1
male gamete generation1
cellular developmental process1
binding1
intracellular anatomical structure1
cytoplasm1

Protein interactions and networks

STRING

1513 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
TSNAXIP1TSNAXQ99598878
TSNAXIP1LRRC23Q53EV4570
TSNAXIP1ZSWIM2Q8NEG5563
TSNAXIP1RSPH14Q9UHP6555
TSNAXIP1RSPH10BP0C881537
TSNAXIP1CCDC146Q8IYE0536
TSNAXIP1CFAP74Q9C0B2526
TSNAXIP1C16orf86Q6ZW13502
TSNAXIP1ADAD1Q96M93490
TSNAXIP1CFAP161Q6P656487
TSNAXIP1MTMR14Q8NCE2482
TSNAXIP1LRRC34Q8IZ02480
TSNAXIP1CFAP52Q8N1V2466
TSNAXIP1CFAP57Q96MR6459
TSNAXIP1N4BP3O15049451

IntAct

17 interactions, top by confidence:

ABTypeScore
TSNAXIP1FAM161Bpsi-mi:“MI:0915”(physical association)0.560
CDC7TSNAXIP1psi-mi:“MI:0915”(physical association)0.560
TSNAXIP1PRPF18psi-mi:“MI:0915”(physical association)0.560
TSNAXIP1SPG21psi-mi:“MI:0915”(physical association)0.560
TSNAXIP1PB2psi-mi:“MI:0915”(physical association)0.370
HSPB1TSNAXIP1psi-mi:“MI:0915”(physical association)0.370
TSNAXIP1DPP8psi-mi:“MI:0914”(association)0.350
FMR1TSNAXIP1psi-mi:“MI:0915”(physical association)0.000
FAM161BTSNAXIP1psi-mi:“MI:0915”(physical association)0.000
CDC7TSNAXIP1psi-mi:“MI:0915”(physical association)0.000
PRPF18TSNAXIP1psi-mi:“MI:0915”(physical association)0.000
SPG21TSNAXIP1psi-mi:“MI:0915”(physical association)0.000

BioGRID (27): TSNAXIP1 (Two-hybrid), PIBF1 (Affinity Capture-MS), CCDC186 (Affinity Capture-MS), DPP8 (Affinity Capture-MS), FBXW5 (Affinity Capture-MS), USO1 (Affinity Capture-MS), TSNAXIP1 (Affinity Capture-RNA), TSNAXIP1 (Two-hybrid), TSNAXIP1 (Two-hybrid), TSNAXIP1 (Two-hybrid), TSNAXIP1 (Two-hybrid), FAM161B (Two-hybrid), PRPF18 (Two-hybrid), TSNAXIP1 (Affinity Capture-RNA), CCDC186 (Affinity Capture-MS)

ESM2 similar proteins: A0JMQ7, A0JMY4, A2AUM9, A2BDR7, A6NI79, A7MD70, A8KB59, F1QRC1, F1RKB1, O35550, O35551, Q05D60, Q08C53, Q0VFN8, Q0VFX2, Q15276, Q17QH9, Q2TAA8, Q2TBK0, Q3USS3, Q3V079, Q498G2, Q4R703, Q4R7Y8, Q4V7B0, Q5JU67, Q5RA03, Q5U3Z6, Q5XI65, Q5XIR6, Q5ZJ27, Q66KE8, Q6DFC2, Q6IQY5, Q6NRB0, Q6NRC9, Q6NRW2, Q6P0R8, Q6P402, Q80UF4

Diamond homologs: Q2TAA8, Q99P25

SIGNOR signaling

0 interactions.

Disease & clinical

Clinical variants and AI predictions

ClinVar

130 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic0
Likely pathogenic0
Uncertain significance113
Likely benign8
Benign0

Top pathogenic / likely-pathogenic (0)

SpliceAI

4451 predictions. Top by Δscore:

VariantEffectΔscore
16:67814300:A:AGacceptor_gain1.0000
16:67814301:G:GGacceptor_gain1.0000
16:67814395:G:GTdonor_gain1.0000
16:67821098:GGA:Gacceptor_gain1.0000
16:67821211:GAAC:Gdonor_gain1.0000
16:67821223:CAG:Cdonor_loss1.0000
16:67821224:AG:Adonor_loss1.0000
16:67821225:GGTC:Gdonor_loss1.0000
16:67821226:GTCAG:Gdonor_loss1.0000
16:67821227:T:Adonor_loss1.0000
16:67824581:A:AGacceptor_gain1.0000
16:67824582:G:GGacceptor_gain1.0000
16:67824787:G:GTdonor_gain1.0000
16:67825268:GCCAG:Gdonor_gain1.0000
16:67825271:AG:Adonor_gain1.0000
16:67825272:GG:Gdonor_gain1.0000
16:67825272:GGT:Gdonor_loss1.0000
16:67825273:G:GGdonor_gain1.0000
16:67825273:GTA:Gdonor_loss1.0000
16:67825274:T:Gdonor_loss1.0000
16:67825915:A:AGacceptor_gain1.0000
16:67825915:AGCT:Aacceptor_gain1.0000
16:67825916:G:GGacceptor_gain1.0000
16:67825916:GCT:Gacceptor_gain1.0000
16:67825916:GCTG:Gacceptor_gain1.0000
16:67826073:AAAGG:Adonor_loss1.0000
16:67826074:AAGG:Adonor_loss1.0000
16:67826076:GGTGA:Gdonor_loss1.0000
16:67826078:T:Adonor_loss1.0000
16:67826151:GAT:Gacceptor_gain1.0000

AlphaMissense

4728 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
16:67826061:T:AW323R0.993
16:67826061:T:CW323R0.993
16:67826063:G:CW323C0.993
16:67826063:G:TW323C0.993
16:67823697:G:CK99N0.989
16:67823697:G:TK99N0.989
16:67826178:T:AW337R0.988
16:67826178:T:CW337R0.988
16:67821164:T:CL55P0.987
16:67823684:T:AL95Q0.987
16:67823693:T:AI98N0.987
16:67826205:A:CS346R0.987
16:67826207:C:AS346R0.987
16:67826207:C:GS346R0.987
16:67823701:G:CA101P0.986
16:67826002:G:CR303P0.986
16:67826536:T:AW405R0.982
16:67826536:T:CW405R0.982
16:67823684:T:CL95P0.981
16:67826227:T:CL353P0.980
16:67824706:T:CL148P0.979
16:67826465:T:CL381P0.978
16:67821152:T:CL51P0.977
16:67826227:T:AL353H0.976
16:67827009:T:CL480P0.976
16:67823641:T:CF81L0.975
16:67823643:T:AF81L0.975
16:67823643:T:GF81L0.975
16:67826023:T:CL310P0.975
16:67827555:T:CL571P0.975

dbSNP variants (sampled 300 via entrez): RS1000009892 (16:67814039 G>A), RS1000051477 (16:67805252 G>C), RS1000185739 (16:67824185 T>C), RS1000277816 (16:67811102 G>A), RS1000317330 (16:67817160 G>GC), RS1000366423 (16:67816806 C>G), RS1000375837 (16:67827040 G>A,C), RS1000468034 (16:67813726 C>G,T), RS1000803072 (16:67822747 G>C), RS1000870500 (16:67824468 G>A), RS1000906719 (16:67806713 C>A,T), RS1000921223 (16:67822394 C>T), RS1000999439 (16:67824075 T>C,G), RS1001001176 (16:67828183 TG>T,TGG), RS1001169202 (16:67814541 G>A,C)

Disease associations

OMIM: gene MIM:607720 | disease phenotypes:

GenCC curated gene-disease

Mondo (1): prostate cancer (MONDO:0008315)

Orphanet (1): Familial prostate cancer (Orphanet:1331)

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

8 associations (top):

StudyTraitp-value
GCST002539_84Schizophrenia2.000000e-08
GCST005751_4Empathy quotient9.000000e-07
GCST006803_42Schizophrenia4.000000e-08
GCST010002_113Refractive error2.000000e-14
GCST90020024_744A body shape index4.000000e-10
GCST90020025_211Waist-to-hip ratio adjusted for BMI3.000000e-09
GCST90020027_23Waist-hip index7.000000e-10
GCST90020029_573Waist circumference adjusted for body mass index6.000000e-13

EFO canonical traits (3, from GWAS)

EFO IDTrait name
EFO:0009183empathy measurement
EFO:0007789BMI-adjusted waist circumference
EFO:0007788BMI-adjusted waist-hip ratio

MeSH disease descriptors (1)

DescriptorNameTree numbers
D011471Prostatic NeoplasmsC04.588.945.440.770; C12.100.500.260.750; C12.100.500.565.625; C12.200.294.260.750; C12.200.294.565.625; C12.200.758.409.750; C12.900.619.750

Drugs & pharmacology

Drug and pharmacology data

Is drug target: no

PharmGKB: 1 entry (VIP=true, CPIC=false)

CTD chemical–gene interactions

18 total (human), top 18 by PubMed support.

ChemicalActions (top 5)PubMed papers
sotorasibaffects cotreatment, increases expression1
sodium arsenitedecreases expression1
ferrous chloridedecreases expression1
tetrachlorodiandecreases expression1
CGP 52608affects binding, increases reaction1
trametinibaffects cotreatment, increases expression1
NVP-BKM120affects cotreatment, increases expression1
Acetaminophendecreases expression1
Air Pollutantsincreases abundance, increases expression1
Benzo(a)pyreneincreases expression1
Rotenonedecreases expression1
Smokeincreases abundance, increases expression1
Tobacco Smoke Pollutiondecreases expression1
Antirheumatic Agentsdecreases expression1
Okadaic Aciddecreases expression1
Copper Sulfatedecreases expression1
Acrylamidedecreases expression1
Particulate Matterincreases expression1

Clinical trials (associated diseases)

300 trials via MONDO — disease-level, not drug-specific.

TrialPhaseStatusTitle
NCT00029224PHASE4COMPLETEDTreatment With Zoledronic Acid in Patients With Breast Cancer, Multiple Myeloma, and Prostate Cancer With Cancer Related Bone Lesions
NCT00035997PHASE4COMPLETEDOpen-label Trial on the Effect of I.V. Zoledronic Acid 4 mg on Bone Density in Hormone Sensitive Prostate Cancer Patients With Bone Metastasis
NCT00063609PHASE4COMPLETEDThe Effect of Zoledronic Acid on Bone Loss in Prostate Cancer Patients Undergoing Androgen Deprivation Therapy
NCT00103623PHASE4SUSPENDEDThe Plenaxis® Experience Study
NCT00106392PHASE4COMPLETEDA Safety and Efficacy Study of Prograf in the Prevention of Erectile Dysfunction After Radical Prostatectomy
NCT00185029PHASE4UNKNOWNMR-Lymphography and Lymph Node Staging in Prostate Cancer
NCT00199485PHASE4COMPLETEDAngelica Sinensis for the Treatment of Hot Flashes in Men Undergoing LHRH Therapy for Prostate Cancer
NCT00219219PHASE4COMPLETEDZoledronic Acid in the Prevention of Skeletal-related Events in Hormone Refractory and Hormone-sensitive Prostate Cancer Patients With Bone Metastases
NCT00219271PHASE4COMPLETEDEffect Of Zoledronic Acid On Circulating And Bone Marrow-Residing Prostate Cancer Cells In Patients With Clinically Localized Prostate Cancer
NCT00237146PHASE4COMPLETEDStudy to Evaluate Zoledronic Acid on Quality of Life and Skeletal-related Events as Adjuvant Treatment in Patients With Hormone-naïve Prostate Cancer and Bone Metastasis Who Have Undergone Orchiectomy
NCT00242554PHASE4COMPLETEDOpen-label Phase IV Clinical Trial to Evaluate the Safety and Tolerability of Zoledronic Acid in Patients With Prostate Cancer and Bone Metastases
NCT00280098PHASE4COMPLETEDDocetaxel in the Treatment of Hormone Refractory Prostate Cancer
NCT00293696PHASE4COMPLETEDCasodex/Zoladex Biomarkers in Localised Prostate Cancer
NCT00334139PHASE4COMPLETEDEffect of Zoledronic Acid on Bone Metabolism in Patients With Bone Metastasis and Prostate or Breast Cancer
NCT00375765PHASE4COMPLETEDEffects On Dihydrotestosterone Regulated Gene Expression In Benign Prostatic Hyperplasia Or Prostate Cancer
NCT00391690PHASE4COMPLETEDEvaluation of Bone Markers as Diagnostic Tools for Early Detection of Bone Metastases in Patients With High Risk Prostate Cancer
NCT00422708PHASE4COMPLETEDLocal Anesthesia for Prostate Biopsy
NCT00526331PHASE4COMPLETEDEvaluation of Arterial Pressure Based Cardiac Output for Goal-Directed Perioperative Therapy
NCT00590213PHASE4COMPLETEDCompare the Value of Prophylactic Versus Therapeutic Breast Radiotherapy in CASODEX
NCT00629330PHASE4TERMINATEDDissemination of Prostate Cancer Screening to PCP’s in African American Communities
NCT00771966PHASE4COMPLETEDRadical Prostatectomy and Perioperative Fluid Therapy
NCT00805701PHASE4COMPLETEDStudy Assessing The Efficacy And Safety Of Avodart (Dutasteride) At Improving Urinary Symptoms In Men With Prostate Cancer Who Are Undergoing Seed Implantation
NCT00859027PHASE4COMPLETEDEffect Of Risedronate On Bone Mass In Older Men Receiving Neoadjuvant Therapy For Prostate Cancer
NCT00906269PHASE4UNKNOWNCan Hyperbaric Oxygen Improve Erectile Function Following Surgery for Prostate Cancer
NCT00953277PHASE4COMPLETEDStudy of Nerve Reconstruction Using AVANCE in Subjects Who Undergo Robotic Assisted Prostatectomy for Treatment of Prostate Cancer
NCT00982800PHASE4COMPLETEDDoes Postoperative Gabapentin Reduce Pain, Opioid Consumption and Anxiety and Have a Positive Effect on Health Related Quality of Life After Radical Prostatectomy?
NCT01083199PHASE4COMPLETEDGlobal Performance Evaluation of the AMS CONTINUUM™ Device
NCT01136226PHASE4COMPLETEDEvaluate Recovery of Testosterone for Patients Using Eligard
NCT01161563PHASE4COMPLETEDRandomized Crossover Trial to Assess the Tolerability of Gonadotropin Releasing Hormone (GnRH) Analogue Administration
NCT01230905PHASE4COMPLETEDStudy to Monitor the Effects of Androgen Suppression Treatment on the Heart
NCT01296672PHASE4COMPLETED3 Month Finasteride Challenge Test Can Significantly Improve the Performance of Screening for Prostate Cancer
NCT01365143PHASE4TERMINATEDProspective Randomized Trial Comparing Robotic Versus Open Radical Prostatectomy
NCT01379742PHASE4UNKNOWNComparison of Between ThinSeed™ and OncoSeed™ for Permanent Prostate Brachytherapy
NCT01486563PHASE4COMPLETEDHydroxyethyl Starch and Renal Function After Radical Prostatectomy
NCT01511874PHASE4COMPLETEDEfficacy and Safety Study of ELIGARD 22.5mg With Prostate Cancer
NCT01512472PHASE4TERMINATEDFirmagon (Degarelix) Intermittent Therapy
NCT01547416PHASE4COMPLETEDThe Effect of Combined General/Epidural Anesthesia Versus General Anesthesia on Diaphragmatic Function
NCT01571544PHASE4COMPLETEDThe Use of Thermal Suits as Preventing Hypothermia During Surgery
NCT01581749PHASE4UNKNOWNEvaluation of Truebeam for Low-Intermediate Risk Prostate Cancer
NCT01649635PHASE4COMPLETEDStudy of Cabazitaxel Combined With Prednisone and Prophylaxis of Neutropenia Complications in the Treatment of Patients With Metastatic Castration-resistant Prostate Cancer

No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.