TSPAN16-AS1

Summary

TSPAN16-AS1 (TSPAN16 antisense RNA 1, HGNC:58319) is a long non-coding RNA gene on chromosome 19p13.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:58319
Approved symbol	TSPAN16-AS1
Name	TSPAN16 antisense RNA 1
Location	19p13.2
Locus type	RNA, long non-coding
Status	Approved
Aliases	HSPC102
Ensembl gene	ENSG00000267174
Ensembl biotype	lncRNA
Entrez	105372274
RNAcentral	URS00026A283A — lncRNA, 686 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 6 — 6 lncRNA

ENST00000585801, ENST00000586356, ENST00000686945, ENST00000689979, ENST00000692167, ENST00000702904

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000585801 — 3 exons

Exon	Start	End
ENSE00002855194	11300867	11301236
ENSE00002889971	11306679	11306824
ENSE00002917081	11321294	11321323

Expression profiles

Bgee: expression breadth ubiquitous, 142 present calls, max score 89.40.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.2984 / max 54.9758, expressed in 63 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
179207	0.2000	50
179206	0.0984	22

Top tissues by expression

232 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
buccal mucosa cell	CL:0002336	89.40	gold quality
blood	UBERON:0000178	88.38	gold quality
oocyte	CL:0000023	87.17	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	86.83	gold quality
bone marrow	UBERON:0002371	81.82	gold quality
granulocyte	CL:0000094	79.98	gold quality
secondary oocyte	CL:0000655	79.89	gold quality
leukocyte	CL:0000738	79.66	gold quality
monocyte	CL:0000576	79.37	gold quality
bone marrow cell	CL:0002092	78.56	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	77.48	silver quality
trabecular bone tissue	UBERON:0002483	73.72	silver quality
right lung	UBERON:0002167	70.17	gold quality
spleen	UBERON:0002106	69.73	gold quality
colonic epithelium	UBERON:0000397	68.90	silver quality
amniotic fluid	UBERON:0000173	68.59	gold quality
superficial temporal artery	UBERON:0001614	65.72	gold quality
hindlimb stylopod muscle	UBERON:0004252	64.99	gold quality
nasal cavity epithelium	UBERON:0005384	64.76	gold quality
sperm	CL:0000019	64.58	gold quality
left uterine tube	UBERON:0001303	63.73	gold quality
gall bladder	UBERON:0002110	61.03	gold quality
myocardium	UBERON:0002349	59.09	gold quality
gingival epithelium	UBERON:0001949	59.02	gold quality
vermiform appendix	UBERON:0001154	58.66	gold quality
nasal cavity mucosa	UBERON:0001826	58.13	gold quality
caecum	UBERON:0001153	57.86	gold quality
heart right ventricle	UBERON:0002080	57.43	gold quality
gingiva	UBERON:0001828	57.17	gold quality
prefrontal cortex	UBERON:0000451	56.81	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.90

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.