TSPAN18
geneOn this page
Also known as TSPAN
Summary
TSPAN18 (tetraspanin 18, HGNC:20660) is a protein-coding gene on chromosome 11p11.2, encoding Tetraspanin-18 (Q96SJ8). Plays a role in the cell surface localization of ORAI1 and may participate in the regulation of Ca(2+) signaling and the VWF release in response to inflammatory stimuli.
Involved in regulation of sprouting angiogenesis. Predicted to be located in membrane. Predicted to be active in plasma membrane.
Source: NCBI Gene 90139 — RefSeq curated summary.
At a glance
- Gene–disease (curated): intellectual disability (Limited, GenCC)
- GWAS associations: 8
- Clinical variants (ClinVar): 55 total
- MANE Select transcript:
NM_130783
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:20660 |
| Approved symbol | TSPAN18 |
| Name | tetraspanin 18 |
| Location | 11p11.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | TSPAN |
| Ensembl gene | ENSG00000157570 |
| Ensembl biotype | protein_coding |
| OMIM | 619399 |
| Entrez | 90139 |
Gene structure
Transcript identifiers
Ensembl transcripts: 32 — 27 protein_coding, 5 retained_intron
ENST00000340160, ENST00000517621, ENST00000518429, ENST00000519051, ENST00000520245, ENST00000520278, ENST00000520358, ENST00000520837, ENST00000520999, ENST00000521990, ENST00000533080, ENST00000533202, ENST00000533786, ENST00000860337, ENST00000860338, ENST00000860339, ENST00000860340, ENST00000860341, ENST00000860342, ENST00000860343, ENST00000860344, ENST00000860345, ENST00000860346, ENST00000860347, ENST00000860348, ENST00000924264, ENST00000924265, ENST00000924266, ENST00000924267, ENST00000955998, ENST00000955999, ENST00000956000
RefSeq mRNA: 1 — MANE Select: NM_130783
NM_130783
CCDS: CCDS7910
Canonical transcript exons
ENST00000520358 — 10 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001182625 | 44909705 | 44909899 |
| ENSE00002115902 | 44860328 | 44860469 |
| ENSE00002123068 | 44929131 | 44932423 |
| ENSE00002125098 | 44764426 | 44764512 |
| ENSE00002166589 | 44726962 | 44727287 |
| ENSE00003565211 | 44917972 | 44918046 |
| ENSE00003603250 | 44919817 | 44919999 |
| ENSE00003610170 | 44926674 | 44926757 |
| ENSE00003613540 | 44906407 | 44906479 |
| ENSE00003691824 | 44919214 | 44919312 |
Expression profiles
Bgee: expression breadth ubiquitous, 194 present calls, max score 98.74.
FANTOM5 (CAGE): breadth broad, TPM avg 10.7706 / max 149.9996, expressed in 797 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 114010 | 10.4475 | 790 |
| 114012 | 0.1341 | 59 |
| 114013 | 0.1105 | 47 |
| 114014 | 0.0785 | 40 |
Top tissues by expression
240 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| cardiac muscle of right atrium | UBERON:0003379 | 98.74 | gold quality |
| left ventricle myocardium | UBERON:0006566 | 97.18 | gold quality |
| cardiac atrium | UBERON:0002081 | 96.20 | gold quality |
| right atrium auricular region | UBERON:0006631 | 96.11 | gold quality |
| kidney epithelium | UBERON:0004819 | 95.52 | silver quality |
| apex of heart | UBERON:0002098 | 95.43 | gold quality |
| cortical plate | UBERON:0005343 | 95.03 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 94.94 | gold quality |
| myocardium | UBERON:0002349 | 94.80 | gold quality |
| adrenal tissue | UBERON:0018303 | 94.66 | gold quality |
| heart left ventricle | UBERON:0002084 | 94.45 | gold quality |
| cardiac ventricle | UBERON:0002082 | 94.35 | gold quality |
| ganglionic eminence | UBERON:0004023 | 94.33 | gold quality |
| right adrenal gland | UBERON:0001233 | 93.44 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 93.41 | gold quality |
| ventricular zone | UBERON:0003053 | 93.36 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 93.29 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 93.23 | gold quality |
| cerebellar cortex | UBERON:0002129 | 93.21 | gold quality |
| adrenal cortex | UBERON:0001235 | 93.03 | gold quality |
| left adrenal gland | UBERON:0001234 | 92.94 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 92.89 | gold quality |
| lower esophagus | UBERON:0013473 | 92.81 | gold quality |
| heart | UBERON:0000948 | 92.78 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 92.76 | gold quality |
| adrenal gland | UBERON:0002369 | 92.66 | gold quality |
| cerebellum | UBERON:0002037 | 92.52 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 92.03 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 91.66 | gold quality |
| body of uterus | UBERON:0009853 | 91.62 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-8271 | yes | 15.25 |
| E-ANND-3 | yes | 7.27 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
154 targeting TSPAN18, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-6867-5P | 100.00 | 82.21 | 3464 |
| HSA-MIR-6748-5P | 100.00 | 65.81 | 1057 |
| HSA-MIR-5196-5P | 100.00 | 67.98 | 2761 |
| HSA-MIR-4455 | 100.00 | 65.48 | 1587 |
| HSA-MIR-4692 | 100.00 | 67.32 | 2066 |
| HSA-MIR-196A-5P | 100.00 | 68.16 | 684 |
| HSA-MIR-196B-5P | 100.00 | 68.16 | 681 |
| HSA-MIR-4500 | 99.99 | 72.72 | 2367 |
| HSA-MIR-4514 | 99.99 | 67.10 | 1870 |
| HSA-MIR-3185 | 99.99 | 68.12 | 1959 |
| HSA-LET-7A-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7B-5P | 99.98 | 72.31 | 1790 |
| HSA-LET-7C-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7E-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7F-5P | 99.98 | 72.56 | 1784 |
| HSA-LET-7G-5P | 99.98 | 72.37 | 1784 |
| HSA-LET-7I-5P | 99.98 | 72.37 | 1788 |
| HSA-MIR-98-5P | 99.98 | 72.33 | 1787 |
| HSA-MIR-6793-5P | 99.97 | 65.95 | 758 |
| HSA-MIR-6825-5P | 99.96 | 69.81 | 3431 |
| HSA-LET-7D-5P | 99.96 | 71.76 | 1632 |
| HSA-MIR-4458 | 99.96 | 71.64 | 1650 |
| HSA-MIR-6721-5P | 99.93 | 68.92 | 2981 |
| HSA-MIR-454-3P | 99.91 | 74.01 | 1925 |
| HSA-MIR-4731-5P | 99.89 | 67.23 | 2537 |
| HSA-MIR-6780A-5P | 99.88 | 66.69 | 2776 |
| HSA-MIR-221-5P | 99.86 | 65.45 | 1052 |
| HSA-MIR-8073 | 99.86 | 65.21 | 1118 |
| HSA-MIR-4728-5P | 99.85 | 69.39 | 4718 |
| HSA-MIR-765 | 99.84 | 68.24 | 2442 |
Literature-anchored findings (GeneRIF, showing 6)
- These results confirm the significant association, in Han Chinese populations, of increased SCZ risk and the variant of the TSPAN18 gene containing the ‘A’ allele of SNP rs835784. (PMID:23505562)
- Meta-analysis results show no significant association between TSPAN18 gene and schizophrenia in the Han Chinese population indicating the gene is unlikely to be a major susceptibility gene for schizophrenia in this population. (PMID:26016498)
- The frequency of rs11038167 minor allele (A) was significantly higher only in female patients with thought disorder. Our result suggested that the TSPAN18 gene may be involved in the development of psychotic symptoms and contribute to clinical heterogeneity of schizophrenia. (PMID:27208512)
- Our results showed that two SNPs (rs11038167 and rs11038172) at TSPAN18, reported as genome-wide significant SCZ risk variants in Han Chinese, were entirely monomorphic in Europeans, indicating a deep between-population divergence at this gene locus. (PMID:27312590)
- The findings identify Tspan18 as a novel regulator of endothelial cell Orai1/Ca2+ signaling and von Willebrand factor release in response to inflammatory stimuli. (PMID:30573509)
- Tspan18 is a novel regulator of thrombo-inflammation. (PMID:32447449)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | tspan18b | ENSDARG00000015015 |
| danio_rerio | tspan18a | ENSDARG00000056656 |
| mus_musculus | Tspan18 | ENSMUSG00000027217 |
| rattus_norvegicus | Tspan18 | ENSRNOG00000008758 |
Paralogs (32): TSPAN6 (ENSG00000000003), CD9 (ENSG00000010278), TSPAN9 (ENSG00000011105), TSPAN17 (ENSG00000048140), TSPAN32 (ENSG00000064201), CD82 (ENSG00000085117), TSPAN15 (ENSG00000099282), CD37 (ENSG00000104894), UPK1A (ENSG00000105668), TSPAN12 (ENSG00000106025), TSPAN13 (ENSG00000106537), TSPAN14 (ENSG00000108219), CD81 (ENSG00000110651), TSPAN11 (ENSG00000110900), PRPH2 (ENSG00000112619), UPK1B (ENSG00000114638), TSPAN1 (ENSG00000117472), TSPAN8 (ENSG00000127324), TSPAN16 (ENSG00000130167), TSPAN2 (ENSG00000134198), CD63 (ENSG00000135404), TSPAN31 (ENSG00000135452), TSPAN3 (ENSG00000140391), CD53 (ENSG00000143119), ROM1 (ENSG00000149489), TSPAN7 (ENSG00000156298), TSPAN33 (ENSG00000158457), TSPAN5 (ENSG00000168785), CD151 (ENSG00000177697), TSPAN10 (ENSG00000182612), TSPAN4 (ENSG00000214063), TSPAN19 (ENSG00000231738)
Protein
Protein identifiers
Tetraspanin-18 — Q96SJ8 (reviewed: Q96SJ8)
All UniProt accessions (7): Q96SJ8, E5RFP3, E5RFV0, E9PKD8, E9PL40, E9PPB7, H0YB98
UniProt curated annotations — full annotation on UniProt →
Function. Plays a role in the cell surface localization of ORAI1 and may participate in the regulation of Ca(2+) signaling and the VWF release in response to inflammatory stimuli.
Subunit / interactions. Interacts with ORAI1; this interaction regulates ORAI1 exit from the endoplasmic (ER), and/or Golgi, and trafficking to the cell surface.
Subcellular location. Membrane.
Tissue specificity. Highly expressed in primary endothelial cells. Expressed in the embryo heart. Weakly expressed the embryo skeletal muscle.
Similarity. Belongs to the tetraspanin (TM4SF) family.
RefSeq proteins (1): NP_570139* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000301 | Tetraspanin_animals | Family |
| IPR008952 | Tetraspanin_EC2_sf | Homologous_superfamily |
| IPR018499 | Tetraspanin/Peripherin | Family |
| IPR018503 | Tetraspanin_CS | Conserved_site |
Pfam: PF00335
UniProt features (13 total): topological domain 5, transmembrane region 4, glycosylation site 2, chain 1, sequence variant 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q96SJ8-F1 | 90.53 | 0.69 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Glycosylation sites (2): 111, 129
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 126 (showing top):
GSE45365_HEALTHY_VS_MCMV_INFECTION_CD8_TCELL_IFNAR_KO_DN, ACTACCT_MIR196A_MIR196B, GOBP_INFLAMMATORY_RESPONSE, SHEPARD_CRASH_AND_BURN_MUTANT_UP, GOBP_VESICLE_MEDIATED_TRANSPORT, GOBP_PROTEIN_LOCALIZATION_TO_CELL_PERIPHERY, GOBP_MONOATOMIC_CATION_TRANSPORT, GOBP_EXOCYTOSIS, GOBP_SPROUTING_ANGIOGENESIS, MODULE_195, GOBP_BLOOD_VESSEL_MORPHOGENESIS, SCHAEFFER_PROSTATE_DEVELOPMENT_48HR_DN, GOBP_SECRETION, GOBP_CALCIUM_ION_REGULATED_EXOCYTOSIS, GOBP_HEMOSTASIS
GO Biological Process (7): inflammatory response (GO:0006954), hemostasis (GO:0007599), calcium-ion regulated exocytosis (GO:0017156), establishment of localization in cell (GO:0051649), regulation of sprouting angiogenesis (GO:1903670), protein localization to cell periphery (GO:1990778), regulation of store-operated calcium entry (GO:2001256)
GO Molecular Function (2): transmembrane transporter binding (GO:0044325), protein binding (GO:0005515)
GO Cellular Component (3): plasma membrane (GO:0005886), cell periphery (GO:0071944), membrane (GO:0016020)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 2 |
| defense response | 1 |
| regulation of body fluid levels | 1 |
| regulated exocytosis | 1 |
| establishment of localization | 1 |
| cellular localization | 1 |
| sprouting angiogenesis | 1 |
| regulation of angiogenesis | 1 |
| intracellular protein localization | 1 |
| store-operated calcium entry | 1 |
| regulation of calcium ion transport | 1 |
| protein binding | 1 |
| binding | 1 |
| membrane | 1 |
| cell periphery | 1 |
Protein interactions and networks
STRING
504 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| TSPAN18 | ADAM10 | O14672 | 761 |
| TSPAN18 | PTGFRN | Q9P2B2 | 644 |
| TSPAN18 | TSPAN32 | Q96QS1 | 489 |
| TSPAN18 | TSPAN13 | O95857 | 481 |
| TSPAN18 | ORAI1 | Q96D31 | 478 |
| TSPAN18 | NKAPL | Q5M9Q1 | 468 |
| TSPAN18 | EPCAM | P16422 | 464 |
| TSPAN18 | CD44 | P16070 | 455 |
| TSPAN18 | TSG101 | Q99816 | 408 |
| TSPAN18 | ZKSCAN4 | Q969J2 | 400 |
| TSPAN18 | GHITM | Q9H3K2 | 378 |
| TSPAN18 | K7ERJ3 | K7ERJ3 | 377 |
| TSPAN18 | TXNL4B | Q9NX01 | 351 |
| TSPAN18 | IGSF8 | Q969P0 | 348 |
| TSPAN18 | ZSCAN31 | Q96LW9 | 348 |
IntAct
5 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| TSPAN18 | FITM2 | psi-mi:“MI:0915”(physical association) | 0.590 |
| TSPAN18 | ITGA6 | psi-mi:“MI:0914”(association) | 0.350 |
| TSPAN18 | iucD | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (33): RNF130 (Affinity Capture-MS), FITM2 (Affinity Capture-MS), TSPAN18 (Two-hybrid), TSPAN18 (Two-hybrid), TSPAN18 (Two-hybrid), TSPAN18 (Two-hybrid), GRM2 (Two-hybrid), TMCO5A (Two-hybrid), CD151 (Two-hybrid), TMEM120A (Two-hybrid), GIMAP5 (Two-hybrid), FITM2 (Affinity Capture-MS), HYAL2 (Affinity Capture-MS), HS6ST2 (Affinity Capture-MS), ANKRD46 (Affinity Capture-MS)
ESM2 similar proteins: A0A8M2B5N2, A0A8V0ZLT4, A1L157, O00322, O60637, O75841, P11049, P19075, P21926, P30409, P30413, P30932, P31053, P38572, P38573, P40239, P40240, P40241, Q0D289, Q2KHY8, Q2MJQ7, Q3SZR9, Q4R4Z3, Q4R7W6, Q566D0, Q568Y5, Q58CY8, Q5RDV7, Q5RE11, Q5RH71, Q61470, Q6AYR9, Q6GQF5, Q6P0C6, Q6ZUX7, Q80WR1, Q8WMQ3, Q91Y55, Q925N4, Q96FX8
Diamond homologs: A0A8M2B5N2, A0A8V0ZLT4, B0BM39, B3VSC2, B5X3I6, O14817, O60635, O75954, O97703, P11049, P60033, P60034, Q06AA5, Q11098, Q26499, Q3T0S3, Q4R7W6, Q4V8E0, Q58CY8, Q5RAP3, Q5RC27, Q61470, Q6AYR9, Q6DCQ3, Q6GMK6, Q80WR1, Q8BJU2, Q922J6, Q96SJ8, Q99J59, Q9DCK3, O60636, P19397, P24485, P30932, P35762, P40240, P62079, P62080, Q17QJ5
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
55 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 36 |
| Likely benign | 3 |
| Benign | 5 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
2925 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 11:44727227:G:GT | donor_gain | 1.0000 |
| 11:44727228:A:T | donor_gain | 1.0000 |
| 11:44756202:A:T | donor_gain | 1.0000 |
| 11:44764425:GA:G | acceptor_gain | 1.0000 |
| 11:44764425:GAGT:G | acceptor_gain | 1.0000 |
| 11:44906475:TATTT:T | donor_gain | 1.0000 |
| 11:44906478:TT:T | donor_gain | 1.0000 |
| 11:44906480:G:GG | donor_gain | 1.0000 |
| 11:44909682:A:AG | acceptor_gain | 1.0000 |
| 11:44909683:A:G | acceptor_gain | 1.0000 |
| 11:44909684:C:G | acceptor_gain | 1.0000 |
| 11:44909691:A:AG | acceptor_gain | 1.0000 |
| 11:44909691:ACT:A | acceptor_gain | 1.0000 |
| 11:44909691:ACTG:A | acceptor_gain | 1.0000 |
| 11:44909692:C:G | acceptor_gain | 1.0000 |
| 11:44909693:T:TA | acceptor_gain | 1.0000 |
| 11:44909694:G:A | acceptor_gain | 1.0000 |
| 11:44909699:GAGCA:G | acceptor_loss | 1.0000 |
| 11:44909700:AGCAG:A | acceptor_loss | 1.0000 |
| 11:44909702:CAGCT:C | acceptor_loss | 1.0000 |
| 11:44909703:AGCTG:A | acceptor_gain | 1.0000 |
| 11:44909704:GCTGG:G | acceptor_gain | 1.0000 |
| 11:44909896:ATTT:A | donor_gain | 1.0000 |
| 11:44909897:TTT:T | donor_gain | 1.0000 |
| 11:44909897:TTTG:T | donor_loss | 1.0000 |
| 11:44909898:TTG:T | donor_loss | 1.0000 |
| 11:44909899:TGTG:T | donor_loss | 1.0000 |
| 11:44909900:G:GG | donor_gain | 1.0000 |
| 11:44909900:GTGA:G | donor_loss | 1.0000 |
| 11:44909901:TGAG:T | donor_loss | 1.0000 |
AlphaMissense
1624 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 11:44919292:T:A | W138R | 0.997 |
| 11:44919292:T:C | W138R | 0.997 |
| 11:44919851:T:G | F156C | 0.997 |
| 11:44919823:T:A | C147S | 0.996 |
| 11:44919823:T:C | C147R | 0.996 |
| 11:44919824:G:C | C147S | 0.996 |
| 11:44919830:G:A | G149E | 0.996 |
| 11:44906467:T:A | N17K | 0.995 |
| 11:44906467:T:G | N17K | 0.995 |
| 11:44909846:G:C | G69R | 0.995 |
| 11:44919242:T:C | L121P | 0.995 |
| 11:44919826:T:A | C148S | 0.995 |
| 11:44919827:G:A | C148Y | 0.995 |
| 11:44919827:G:C | C148S | 0.995 |
| 11:44919829:G:T | G149W | 0.995 |
| 11:44926678:G:A | C207Y | 0.995 |
| 11:44919825:C:G | C147W | 0.994 |
| 11:44919910:T:C | C176R | 0.994 |
| 11:44919913:T:A | C177S | 0.994 |
| 11:44919914:G:C | C177S | 0.994 |
| 11:44926674:G:T | G206C | 0.994 |
| 11:44926677:T:A | C207S | 0.994 |
| 11:44926677:T:C | C207R | 0.994 |
| 11:44926678:G:C | C207S | 0.994 |
| 11:44926679:T:G | C207W | 0.994 |
| 11:44906475:T:A | I20K | 0.993 |
| 11:44909855:G:C | G72R | 0.993 |
| 11:44919824:G:A | C147Y | 0.993 |
| 11:44919830:G:T | G149V | 0.993 |
| 11:44919910:T:A | C176S | 0.993 |
dbSNP variants (sampled 300 via entrez): RS1000011903 (11:44809965 G>A), RS1000056565 (11:44928002 C>G), RS1000059425 (11:44763981 C>T), RS1000063182 (11:44891073 G>A), RS1000075660 (11:44863459 C>T), RS1000079614 (11:44803451 C>T), RS1000088714 (11:44928234 G>A,T), RS1000100279 (11:44844597 C>T), RS1000105345 (11:44783738 G>C), RS1000123735 (11:44744195 A>G), RS1000133459 (11:44823408 G>A), RS1000134141 (11:44840039 T>A,G), RS1000170403 (11:44760858 C>T), RS1000171325 (11:44843271 G>A,C), RS1000175516 (11:44874012 G>A)
Disease associations
OMIM: gene MIM:619399 | disease phenotypes:
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| intellectual disability | Limited | Autosomal recessive |
Mondo (1): intellectual disability (MONDO:0001071)
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
8 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001299_2 | Schizophrenia | 1.000000e-11 |
| GCST003675_2 | Obstructive sleep apnea trait (average respiratory event duration) | 6.000000e-08 |
| GCST005411_11 | Thrombin-activatable fibrinolysis inhibitor activation peptide | 3.000000e-07 |
| GCST006193_3 | Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test) | 1.000000e-09 |
| GCST006194_6 | Diastolic blood pressure x smoking status (current vs non-current) interaction (1df test) | 1.000000e-08 |
| GCST006412_118 | Intraocular pressure | 3.000000e-08 |
| GCST010397_25 | Gut microbiota (bacterial taxa, rank normal transformation method) | 1.000000e-06 |
| GCST012020_204 | Serum metabolite levels | 3.000000e-12 |
EFO canonical traits (5, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0007817 | sleep apnea measurement |
| EFO:0006336 | diastolic blood pressure |
| EFO:0006527 | smoking status measurement |
| EFO:0004695 | intraocular pressure measurement |
| EFO:0007874 | gut microbiome measurement |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
45 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects expression, increases methylation, affects cotreatment, increases expression, decreases expression | 8 |
| sodium arsenite | affects splicing, decreases expression, increases abundance, increases expression | 4 |
| trichostatin A | affects cotreatment, decreases expression | 3 |
| Benzo(a)pyrene | increases methylation, affects methylation, decreases expression | 3 |
| Tobacco Smoke Pollution | affects expression, decreases expression | 3 |
| bisphenol S | affects cotreatment, decreases methylation, decreases expression | 2 |
| Aflatoxin B1 | affects methylation, increases methylation | 2 |
| triphenyl phosphate | affects expression | 1 |
| propionaldehyde | increases expression | 1 |
| bisphenol A | decreases methylation | 1 |
| butyraldehyde | increases expression | 1 |
| tobacco tar | increases expression | 1 |
| benzo(e)pyrene | decreases methylation | 1 |
| potassium chromate(VI) | affects cotreatment, decreases expression | 1 |
| aflatoxin B2 | increases methylation | 1 |
| S-(1,2-dichlorovinyl)cysteine | affects response to substance, increases expression, affects cotreatment, decreases expression | 1 |
| beta-methylcholine | affects expression | 1 |
| epigallocatechin gallate | affects cotreatment, decreases expression | 1 |
| pentanal | increases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| CGP 52608 | increases reaction, affects binding | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| ICG 001 | increases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| (+)-JQ1 compound | decreases expression | 1 |
| 4-(4-((5-(4,5-dimethyl-2-nitrophenyl)-2-furanyl)methylene)-4,5-dihydro-3-methyl-5-oxo-1H-pyrazol-1-yl)benzoic acid | increases expression | 1 |
| Sunitinib | decreases expression | 1 |
| Zoledronic Acid | increases expression | 1 |
| Fulvestrant | affects cotreatment, decreases methylation | 1 |
| Aldehydes | increases expression | 1 |
Clinical trials (associated diseases)
197 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT05657860 | PHASE4 | COMPLETED | Guanfacine Extended Release for the Reduction of Aggression and Self-injurious Behavior Associated With Prader-Willi Syndrome |
| NCT05744479 | PHASE4 | RECRUITING | Metformin for Antipsychotic-induced Weight Gain in Adults With Intellectual Disability |
| NCT06107829 | PHASE4 | WITHDRAWN | Valbenazine Treatment of Tardive Dyskinesia in Adults With Intellectual/Developmental Disabilities |
| NCT06997198 | PHASE4 | NOT_YET_RECRUITING | Deutetrabenazine Treatment for Tardive Dyskinesia in Intellectual/Developmental Disabilities |
| NCT02270736 | PHASE3 | COMPLETED | Clinical Study to Investigate the Efficacy and Safety of NT 201 Compared to Placebo in the Treatment of Chronic Troublesome Drooling Associated With Neurological Disorders and/or Intellectual Disability |
| NCT02304302 | PHASE2 | COMPLETED | Down Syndrome Memantine Follow-up Study |
| NCT03862950 | PHASE2 | COMPLETED | A Trial of Metformin in Individuals With Fragile X Syndrome (Met) |
| NCT04529226 | PHASE2 | UNKNOWN | Study to Compare Clozapine vs Treatment as Usual in People With Intellectual Disability & Treatment-resistant Psychosis |
| NCT04821856 | PHASE2 | COMPLETED | Evaluation of the Effectiveness of Cannabidiol in Treating Severe Behavioural Problems in Children and Adolescents With Intellectual Disability |
| NCT05273320 | PHASE1 | COMPLETED | Clinical Trial of Nabilone for Aggression in Adults With Intellectual and Developmental Disabilities |
| NCT05301361 | PHASE1 | ENROLLING_BY_INVITATION | Sensitivity of the NIH Toolbox to Stimulant Treatment in Intellectual Disabilities |
| NCT06016764 | PHASE1 | COMPLETED | Use of MRI and cTBS for Catatonia in Autism |
| NCT06586827 | PHASE1 | COMPLETED | Impact of Competency-Based Training and Technical Assistance Employment Outcomes of Individuals With ID/DD |
| NCT07531940 | PHASE1 | NOT_YET_RECRUITING | Escalating Doses of Memantine in Down Syndrome (MEDS-123) |
| NCT03479476 | PHASE2/PHASE3 | COMPLETED | A Trial of Metformin in Individuals With Fragile X Syndrome |
| NCT02616796 | PHASE1/PHASE2 | COMPLETED | Effects of Social Gaze Training on Brain and Behavior in Fragile X Syndrome |
| NCT06860672 | EARLY_PHASE1 | RECRUITING | Clinical Trial of the Dual Vector Base Editor for the Treatment of the CHD3-R1025W Mutation |
| NCT00597948 | Not specified | COMPLETED | Healthy Lifestyles for People With Intellectual Disabilities |
| NCT01087320 | Not specified | RECRUITING | Genome Medical Sequencing for Gene Discovery |
| NCT01652963 | Not specified | UNKNOWN | Picture-based Computerised Assessment and Training of Cognitive Behaviour Therapy Skills |
| NCT01695395 | Not specified | COMPLETED | Mental Health Care Provision for Adults With Intellectual Disability and a Mental Disorder |
| NCT01867554 | Not specified | COMPLETED | Research and Characterization of New Genes Involved in Intellectual Disability |
| NCT01915381 | Not specified | COMPLETED | Improving Adherence Healthy Lifestyle With a Smartphone Application Based on Adults With Intellectual Disabilities |
| NCT01988623 | Not specified | COMPLETED | Pivotal Response Treatment for Individuals With Intellectual Disabilities |
| NCT02099773 | Not specified | COMPLETED | Support Staff-client Interactions With Augmentative and Alternative Communication |
| NCT02136849 | Not specified | COMPLETED | Inter-regional Project of the Great Western Exploration Approach for Exome Molecular Causes Severe Intellectual Disability Isolated or Syndromic |
| NCT02225041 | Not specified | COMPLETED | Sedation Strategy and Cognitive Outcome After Critical Illness in Early Childhood |
| NCT02414438 | Not specified | COMPLETED | Establishing the Clinical Utility of First StepDx PLUS and NextStepDx PLUS Study |
| NCT02451761 | Not specified | COMPLETED | Apparently Balanced Chromosomal Translocation/ Next-generation Sequencing/ Intellectual Disability |
| NCT02461420 | Not specified | ACTIVE_NOT_RECRUITING | Mapping the Genotype, Phenotype, and Natural History of Phelan-McDermid Syndrome |
| NCT02461459 | Not specified | ACTIVE_NOT_RECRUITING | Autism Spectrum Disorder (ASD) and Intellectual Disability (ID) Determinants in Tuberous Sclerosis Complex (TSC) |
| NCT02486081 | Not specified | COMPLETED | Development and Application-Smart Football for Movement Evaluation and Training in the Special Education Population |
| NCT02504502 | Not specified | COMPLETED | Enhancing Genomic Laboratory Reports to Enhance Communication and Empower Patients |
| NCT02513277 | Not specified | COMPLETED | Diabetes Screening & Prevention for People With Learning (Intellectual) Disabilities:STOP Diabetes Study |
| NCT02561754 | Not specified | COMPLETED | Weight Management for Adolescents With IDD |
| NCT02591446 | Not specified | COMPLETED | Transcranial Magnetic Stimulation Studies in Autism Spectrum Disorders |
| NCT02714868 | Not specified | COMPLETED | Evaluation of Project TEAM (Teens Making Environmental and Activity Modifications) |
| NCT02721394 | Not specified | UNKNOWN | FCT With Young Children With ID in the UK: A Feasibility Project V.1 |
| NCT02746614 | Not specified | COMPLETED | Psychomotor Therapy Effects in Adaptive Behavior and Motor Proficiency in Intellectual Disability |
| NCT02836405 | Not specified | COMPLETED | TMS for the Investigation of Brain Plasticity in Autism Spectrum Disorders |
Related Atlas pages
- Associated diseases: intellectual disability
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): obstructive sleep apnea syndrome