TTC39C-AS1

Summary

TTC39C-AS1 (TTC39C antisense RNA 1, HGNC:51321) is a long non-coding RNA gene on chromosome 18q11.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51321
Approved symbol	TTC39C-AS1
Name	TTC39C antisense RNA 1
Location	18q11.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000264745
Ensembl biotype	lncRNA
Entrez	102724246
RNAcentral	URS000075A8A0 — lncRNA, 949 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 17 — 17 lncRNA

ENST00000579713, ENST00000735309, ENST00000735310, ENST00000735311, ENST00000735312, ENST00000735313, ENST00000735314, ENST00000735315, ENST00000735316, ENST00000735317, ENST00000735318, ENST00000735319, ENST00000735320, ENST00000735321, ENST00000735322, ENST00000735323, ENST00000735324

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000579713 — 6 exons

Exon	Start	End
ENSE00002688606	24015304	24015339
ENSE00002694967	24001565	24001659
ENSE00002701772	24006367	24006486
ENSE00002707522	23994213	23994479
ENSE00002712613	24000389	24000562
ENSE00002723527	24012917	24013041

Expression profiles

Bgee: expression breadth ubiquitous, 122 present calls, max score 73.55.

Top tissues by expression

126 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
skeletal muscle tissue	UBERON:0001134	73.55	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	73.13	gold quality
thymus	UBERON:0002370	70.99	silver quality
granulocyte	CL:0000094	69.93	gold quality
cortical plate	UBERON:0005343	65.50	gold quality
pituitary gland	UBERON:0000007	64.84	gold quality
adenohypophysis	UBERON:0002196	64.20	gold quality
blood	UBERON:0000178	64.17	gold quality
quadriceps femoris	UBERON:0001377	64.14	gold quality
colonic epithelium	UBERON:0000397	63.69	silver quality
cerebellar vermis	UBERON:0004720	63.05	gold quality
ganglionic eminence	UBERON:0004023	62.60	gold quality
left testis	UBERON:0004533	62.57	gold quality
testis	UBERON:0000473	62.37	gold quality
right adrenal gland cortex	UBERON:0035827	62.26	gold quality
right uterine tube	UBERON:0001302	62.11	gold quality
liver	UBERON:0002107	62.08	gold quality
right lobe of liver	UBERON:0001114	61.70	gold quality
right testis	UBERON:0004534	61.34	gold quality
lymph node	UBERON:0000029	61.16	gold quality
right adrenal gland	UBERON:0001233	60.94	gold quality
endocervix	UBERON:0000458	60.31	gold quality
left adrenal gland cortex	UBERON:0035825	59.84	gold quality
hypothalamus	UBERON:0001898	59.78	gold quality
sural nerve	UBERON:0015488	59.26	silver quality
adrenal gland	UBERON:0002369	58.27	gold quality
lower esophagus	UBERON:0013473	58.04	gold quality
lower esophagus muscularis layer	UBERON:0035833	58.03	gold quality
leukocyte	CL:0000738	57.91	gold quality
tonsil	UBERON:0002372	57.90	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.06

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.