TTLL4
gene geneOn this page
Also known as KIAA0173
Summary
TTLL4 (tubulin tyrosine ligase like 4, HGNC:28976) is a protein-coding gene on chromosome 2q35, encoding Tubulin monoglutamylase TTLL4 (Q14679). Monoglutamylase which modifies both tubulin and non-tubulin proteins, adding a single glutamate on the gamma-carboxyl group of specific glutamate residues of target proteins.
Predicted to enable tubulin binding activity and tubulin-glutamic acid ligase activity. Predicted to be involved in microtubule cytoskeleton organization and protein polyglutamylation. Predicted to act upstream of or within regulation of blastocyst development. Predicted to be located in cytosol. Predicted to be active in ciliary basal body.
Source: NCBI Gene 9654 — RefSeq curated summary.
At a glance
- GWAS associations: 7
- Clinical variants (ClinVar): 157 total
- MANE Select transcript:
NM_014640
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:28976 |
| Approved symbol | TTLL4 |
| Name | tubulin tyrosine ligase like 4 |
| Location | 2q35 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | KIAA0173 |
| Ensembl gene | ENSG00000135912 |
| Ensembl biotype | protein_coding |
| OMIM | 618738 |
| Entrez | 9654 |
Gene structure
Transcript identifiers
Ensembl transcripts: 32 — 21 protein_coding, 9 retained_intron, 2 nonsense_mediated_decay
ENST00000392102, ENST00000415717, ENST00000417196, ENST00000417855, ENST00000424644, ENST00000434241, ENST00000436668, ENST00000437755, ENST00000442769, ENST00000448224, ENST00000457313, ENST00000461181, ENST00000465558, ENST00000467841, ENST00000472527, ENST00000475950, ENST00000480472, ENST00000480929, ENST00000491899, ENST00000494428, ENST00000863359, ENST00000863360, ENST00000863361, ENST00000863362, ENST00000863363, ENST00000917349, ENST00000917350, ENST00000917351, ENST00000917352, ENST00000917353, ENST00000917354, ENST00000958172
RefSeq mRNA: 1 — MANE Select: NM_014640
NM_014640
CCDS: CCDS2422
Canonical transcript exons
ENST00000392102 — 20 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000922311 | 218740058 | 218740167 |
| ENSE00000922312 | 218740521 | 218740584 |
| ENSE00000922313 | 218745109 | 218745233 |
| ENSE00000922314 | 218745691 | 218745801 |
| ENSE00000922324 | 218752763 | 218752973 |
| ENSE00000922325 | 218753115 | 218753185 |
| ENSE00001510708 | 218754134 | 218755416 |
| ENSE00001510709 | 218737579 | 218739163 |
| ENSE00001510710 | 218727269 | 218727347 |
| ENSE00001510712 | 218710835 | 218711037 |
| ENSE00003506572 | 218747597 | 218747725 |
| ENSE00003519640 | 218747290 | 218747372 |
| ENSE00003538530 | 218753584 | 218753669 |
| ENSE00003557432 | 218748105 | 218748227 |
| ENSE00003560895 | 218751704 | 218751806 |
| ENSE00003568129 | 218746155 | 218746231 |
| ENSE00003589579 | 218750009 | 218750146 |
| ENSE00003632128 | 218748836 | 218748934 |
| ENSE00003645234 | 218749253 | 218749387 |
| ENSE00003691390 | 218747003 | 218747194 |
Expression profiles
Bgee: expression breadth ubiquitous, 239 present calls, max score 96.73.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 19.7245 / max 322.5290, expressed in 1796 samples.
FANTOM5 promoters (16 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 25372 | 13.4379 | 1750 |
| 25374 | 3.3645 | 1364 |
| 25373 | 0.7290 | 475 |
| 25380 | 0.4821 | 114 |
| 25371 | 0.3675 | 192 |
| 25384 | 0.2889 | 95 |
| 25379 | 0.2687 | 57 |
| 25386 | 0.2035 | 87 |
| 25387 | 0.1875 | 92 |
| 25381 | 0.1507 | 58 |
Top tissues by expression
292 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| left testis | UBERON:0004533 | 96.73 | gold quality |
| right testis | UBERON:0004534 | 96.60 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 94.69 | gold quality |
| tibial nerve | UBERON:0001323 | 94.46 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 94.05 | gold quality |
| testis | UBERON:0000473 | 93.76 | gold quality |
| pigmented layer of retina | UBERON:0001782 | 93.43 | gold quality |
| retina | UBERON:0000966 | 93.41 | gold quality |
| ventricular zone | UBERON:0003053 | 93.20 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 92.12 | gold quality |
| right uterine tube | UBERON:0001302 | 92.10 | gold quality |
| adenohypophysis | UBERON:0002196 | 91.24 | gold quality |
| spinal cord | UBERON:0002240 | 91.12 | gold quality |
| skin of abdomen | UBERON:0001416 | 90.54 | gold quality |
| granulocyte | CL:0000094 | 90.41 | gold quality |
| minor salivary gland | UBERON:0001830 | 90.09 | gold quality |
| sural nerve | UBERON:0015488 | 89.87 | gold quality |
| pituitary gland | UBERON:0000007 | 89.70 | gold quality |
| skin of leg | UBERON:0001511 | 89.68 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 89.58 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 89.31 | gold quality |
| caudate nucleus | UBERON:0001873 | 89.29 | gold quality |
| ganglionic eminence | UBERON:0004023 | 89.28 | gold quality |
| monocyte | CL:0000576 | 89.24 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 89.20 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 89.14 | gold quality |
| right frontal lobe | UBERON:0002810 | 89.09 | gold quality |
| putamen | UBERON:0001874 | 89.03 | gold quality |
| leukocyte | CL:0000738 | 88.97 | gold quality |
| right adrenal gland | UBERON:0001233 | 88.95 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 5.03 |
| E-GEOD-99795 | no | 63.32 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
67 targeting TTLL4, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-4510 | 100.00 | 66.60 | 2050 |
| HSA-MIR-6127 | 100.00 | 66.76 | 2188 |
| HSA-MIR-6129 | 100.00 | 66.46 | 2080 |
| HSA-MIR-6130 | 100.00 | 66.69 | 2012 |
| HSA-MIR-6133 | 100.00 | 66.48 | 2064 |
| HSA-MIR-4500 | 99.99 | 72.72 | 2367 |
| HSA-MIR-520G-5P | 99.99 | 66.76 | 658 |
| HSA-LET-7A-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7B-5P | 99.98 | 72.31 | 1790 |
| HSA-LET-7C-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7E-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7F-5P | 99.98 | 72.56 | 1784 |
| HSA-LET-7G-5P | 99.98 | 72.37 | 1784 |
| HSA-LET-7I-5P | 99.98 | 72.37 | 1788 |
| HSA-MIR-98-5P | 99.98 | 72.33 | 1787 |
| HSA-MIR-8068 | 99.98 | 73.85 | 2376 |
| HSA-LET-7D-5P | 99.96 | 71.76 | 1632 |
| HSA-MIR-4458 | 99.96 | 71.64 | 1650 |
| HSA-MIR-589-3P | 99.91 | 69.62 | 2088 |
| HSA-MIR-7162-3P | 99.89 | 68.16 | 1682 |
| HSA-MIR-12119 | 99.87 | 68.35 | 1653 |
| HSA-MIR-4779 | 99.86 | 66.50 | 1583 |
| HSA-MIR-1321 | 99.84 | 65.30 | 1811 |
| HSA-MIR-4739 | 99.84 | 65.25 | 1832 |
| HSA-MIR-4756-5P | 99.84 | 64.98 | 1809 |
| HSA-MIR-6079 | 99.84 | 68.54 | 1170 |
| HSA-MIR-6715A-3P | 99.83 | 68.05 | 1473 |
| HSA-MIR-3133 | 99.81 | 70.92 | 3506 |
| HSA-MIR-4713-5P | 99.78 | 67.80 | 1794 |
Literature-anchored findings (GeneRIF, showing 2)
- Characterization of another human tubulin tyrosine ligase-like gene family member (PMID:11054573)
- Tubulin Tyrosine Ligase Like 4 (TTLL4) overexpression in breast cancer cells is associated with brain metastasis and alters exosome biogenesis. (PMID:32998758)
Cross-species orthologs
6 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | ttll4 | ENSDARG00000078935 |
| mus_musculus | Ttll4 | ENSMUSG00000033257 |
| rattus_norvegicus | Ttll4 | ENSRNOG00000017129 |
| drosophila_melanogaster | TTLL4A | FBGN0026147 |
| drosophila_melanogaster | TTLL4B | FBGN0031574 |
| caenorhabditis_elegans | WBGENE00014232 |
Paralogs (12): TTLL1 (ENSG00000100271), TTLL12 (ENSG00000100304), TTLL2 (ENSG00000120440), TTLL9 (ENSG00000131044), TTLL7 (ENSG00000137941), TTLL8 (ENSG00000138892), TTLL10 (ENSG00000162571), TTLL6 (ENSG00000170703), TTLL11 (ENSG00000175764), KPRP (ENSG00000203786), TTLL13 (ENSG00000213471), TTLL3 (ENSG00000214021)
Protein
Protein identifiers
Tubulin monoglutamylase TTLL4 — Q14679 (reviewed: Q14679)
Alternative names: Protein monoglutamylase TTLL4, Tubulin–tyrosine ligase-like protein 4
All UniProt accessions (11): C9J3I1, C9J982, C9JB60, E7EX20, E9PH58, Q14679, H7BZY4, H7C1F7, H7C2S3, H7C421, H7C470
UniProt curated annotations — full annotation on UniProt →
Function. Monoglutamylase which modifies both tubulin and non-tubulin proteins, adding a single glutamate on the gamma-carboxyl group of specific glutamate residues of target proteins. Involved in the side-chain initiation step of the polyglutamylation reaction but not in the elongation step. Preferentially modifies beta-tail tubulin over the alpha-tubulin. Monoglutamylates nucleosome assembly proteins NAP1L1 and NAP1L4. Monoglutamylates nucleotidyltransferase CGAS, leading to inhibition of CGAS catalytic activity, thereby preventing antiviral defense function. Involved in KLF4 glutamylation which impedes its ubiquitination, thereby leading to somatic cell reprogramming, pluripotency maintenance and embryogenesis.
Subcellular location. Cytoplasm. Cell projection. Cilium. Cytoskeleton. Cilium basal body.
Domain organisation. The flexible c-MTBD (cationic microtubule binding domain) region mediates binding to microtubules. It is positively charged and becomes ordered when bound to microtubules: it interacts with a negatively charged patch on tubulin. The presence of positive charges in the c-MTBD region is essential for proper binding. Arg-727 is the main determinant for regioselectivity, which segregates between initiases and elongases in all tubulin–tyrosine ligase family. A glutamine residue at this position is found in elongases TTLL6, TTLL9, TTLL11, TTLL13, TTLL10 and favors glutamate-chain elongation, whereas an arginine residue is found in initiases TTLL2, TTLL4, TTLL5, TTLL3, TTLL8 and favors initiation.
Similarity. Belongs to the tubulin–tyrosine ligase family.
RefSeq proteins (1): NP_055455* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR004344 | TTL/TTLL_fam | Family |
Pfam: PF03133
Catalyzed reactions (Rhea), 1 shown:
- L-glutamyl-[protein] + L-glutamate + ATP = gamma-L-glutamyl-L-glutamyl-[protein] + ADP + phosphate + H(+) (RHEA:60144)
UniProt features (39 total): binding site 15, sequence variant 8, compositionally biased region 6, region of interest 5, chain 1, domain 1, site 1, modified residue 1, mutagenesis site 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 5T6X | X-RAY DIFFRACTION | 1.69 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q14679-F1 | 59.09 | 0.35 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 727 (essential for specifying initiation versus elongation step of the polyglutamylase activity)
Ligand- & substrate-binding residues (15): 721; 727–728; 727; 749–752; 762–764; 788; 809–810; 811; 812; 833; 893; 906 …
Post-translational modifications (1): 691
Mutagenesis-validated functional residues (1):
| Position | Phenotype |
|---|---|
| 978–981 | decreased binding to microtubules and polyglutamylase activity. |
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-8955332 | Carboxyterminal post-translational modifications of tubulin |
MSigDB gene sets: 177 (showing top):
GOBP_EMBRYO_DEVELOPMENT_ENDING_IN_BIRTH_OR_EGG_HATCHING, BUYTAERT_PHOTODYNAMIC_THERAPY_STRESS_DN, MORF_BRCA1, YANG_BREAST_CANCER_ESR1_LASER_DN, FRASOR_RESPONSE_TO_SERM_OR_FULVESTRANT_DN, GGAMTNNNNNTCCY_UNKNOWN, GOCC_MICROTUBULE_ORGANIZING_CENTER, MODULE_205, GOBP_IN_UTERO_EMBRYONIC_DEVELOPMENT, SMID_BREAST_CANCER_LUMINAL_A_DN, GOBP_BLASTOCYST_DEVELOPMENT, LIAO_METASTASIS, CYTAGCAAY_UNKNOWN, GOBP_PEPTIDYL_GLUTAMIC_ACID_MODIFICATION, BOYAULT_LIVER_CANCER_SUBCLASS_G1_UP
GO Biological Process (5): microtubule cytoskeleton organization (GO:0000226), protein polyglutamylation (GO:0018095), peptidyl-glutamic acid modification (GO:0018200), regulation of blastocyst development (GO:0120222), protein modification process (GO:0036211)
GO Molecular Function (8): ATP binding (GO:0005524), tubulin binding (GO:0015631), metal ion binding (GO:0046872), protein-glutamic acid ligase activity (GO:0070739), tubulin-glutamic acid ligase activity (GO:0070740), protein-glutamic acid ligase activity, initiating (GO:0106437), nucleotide binding (GO:0000166), ligase activity (GO:0016874)
GO Cellular Component (8): cytosol (GO:0005829), microtubule (GO:0005874), ciliary basal body (GO:0036064), 9+0 non-motile cilium (GO:0097731), cytoplasm (GO:0005737), cytoskeleton (GO:0005856), cilium (GO:0005929), cell projection (GO:0042995)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Post-translational protein modification | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| protein-glutamic acid ligase activity | 2 |
| cytoskeleton organization | 1 |
| microtubule-based process | 1 |
| peptidyl-glutamic acid modification | 1 |
| peptidyl-amino acid modification | 1 |
| blastocyst development | 1 |
| regulation of developmental process | 1 |
| protein metabolic process | 1 |
| macromolecule modification | 1 |
| adenyl ribonucleotide binding | 1 |
| purine ribonucleoside triphosphate binding | 1 |
| cytoskeletal protein binding | 1 |
| cation binding | 1 |
| acid-amino acid ligase activity | 1 |
| catalytic activity, acting on a protein | 1 |
| nucleoside phosphate binding | 1 |
| heterocyclic compound binding | 1 |
| catalytic activity | 1 |
| cytoplasm | 1 |
| microtubule cytoskeleton | 1 |
| polymeric cytoskeletal fiber | 1 |
| microtubule organizing center | 1 |
| cilium | 1 |
| non-motile cilium | 1 |
| intracellular anatomical structure | 1 |
| intracellular membraneless organelle | 1 |
| intraciliary transport particle | 1 |
| membrane-bounded organelle | 1 |
| plasma membrane bounded cell projection | 1 |
Protein interactions and networks
STRING
676 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| TTLL4 | AGBL4 | Q5VU57 | 807 |
| TTLL4 | TTLL12 | Q14166 | 709 |
| TTLL4 | AGBL5 | Q8NDL9 | 684 |
| TTLL4 | TTL | Q8NG68 | 570 |
| TTLL4 | TTLL5 | Q6EMB2 | 570 |
| TTLL4 | ATAT1 | Q5SQI0 | 554 |
| TTLL4 | CPXM2 | Q8N436 | 530 |
| TTLL4 | TTLL10 | Q6ZVT0 | 515 |
| TTLL4 | AGTPBP1 | Q9UPW5 | 479 |
| TTLL4 | SPAST | Q9UBP0 | 471 |
| TTLL4 | TTLL1 | O95922 | 451 |
| TTLL4 | TTLL6 | Q8N841 | 438 |
| TTLL4 | KIF17 | Q9P2E2 | 433 |
| TTLL4 | TTLL11 | Q8NHH1 | 432 |
| TTLL4 | SVBP | Q8N300 | 426 |
IntAct
22 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| MAPK8IP1 | MAPK8 | psi-mi:“MI:0914”(association) | 0.770 |
| MAPK8IP1 | HOXC8 | psi-mi:“MI:0914”(association) | 0.530 |
| N | NOP56 | psi-mi:“MI:0914”(association) | 0.530 |
| AHSP | TTLL4 | psi-mi:“MI:0914”(association) | 0.530 |
| AGTPBP1 | TTLL4 | psi-mi:“MI:0915”(physical association) | 0.400 |
| Xpo1 | IFT56 | psi-mi:“MI:0914”(association) | 0.350 |
| LZTS2 | MYO9A | psi-mi:“MI:0914”(association) | 0.350 |
| VTN | HAT1 | psi-mi:“MI:0914”(association) | 0.350 |
| PSME3 | C11orf98 | psi-mi:“MI:0914”(association) | 0.350 |
| PIPSL | C1orf226 | psi-mi:“MI:0914”(association) | 0.350 |
| FTL | SH3PXD2B | psi-mi:“MI:0914”(association) | 0.350 |
| TTLL4 | ANKRD28 | psi-mi:“MI:0914”(association) | 0.350 |
| AHSP | RP2 | psi-mi:“MI:0914”(association) | 0.350 |
| MAPK8IP1 | NEDD4 | psi-mi:“MI:0914”(association) | 0.350 |
| MAPK8IP2 | SEMG1 | psi-mi:“MI:0914”(association) | 0.350 |
| AHSP | GMFB | psi-mi:“MI:0914”(association) | 0.350 |
| FTL | psi-mi:“MI:0914”(association) | 0.350 | |
| PCM1 | CCDC66 | psi-mi:“MI:2364”(proximity) | 0.270 |
BioGRID (36): TTLL4 (Affinity Capture-RNA), TTLL4 (Affinity Capture-MS), TTLL4 (Proximity Label-MS), TTLL4 (Affinity Capture-MS), TTLL4 (Affinity Capture-MS), TTLL4 (Affinity Capture-MS), TTLL4 (Affinity Capture-MS), TTLL4 (Affinity Capture-MS), TTLL4 (Affinity Capture-MS), TTLL4 (Affinity Capture-RNA), TTLL4 (Affinity Capture-MS), TTLL4 (Affinity Capture-MS), TTLL4 (Affinity Capture-MS), TTLL4 (Affinity Capture-RNA), TTLL4 (Affinity Capture-MS)
ESM2 similar proteins: A0JM98, A1L1H3, A4Q9E8, A4Q9F0, A4Q9F6, A6NNM8, A7MBJ2, A8CVX7, D3ZF42, O54928, O75159, O88866, P51957, P57058, P59110, Q08D35, Q0P4M4, Q14679, Q29RN6, Q5NC05, Q5QJC4, Q5R978, Q5RHD1, Q5SUS0, Q5T7B8, Q63679, Q68UT7, Q6EEF3, Q6EMB2, Q6GQJ2, Q6IE81, Q6IE82, Q6IRU7, Q6NWW5, Q6P1H6, Q6P7W0, Q6PCM1, Q6PJP8, Q6ZPI0, Q7TP65
Diamond homologs: A2APC3, A4Q9E4, A4Q9E5, A4Q9E8, A4Q9F0, A4Q9F1, A4Q9F4, A4Q9F6, A6NNM8, A6PVC2, A8CVX7, A8X9V4, B2GUB3, E9P886, F7E540, H2KZM9, O95922, P38160, P38584, Q09647, Q0VC71, Q14679, Q1ECV4, Q23AS2, Q23K29, Q23MT7, Q23SI8, Q3SXZ7, Q3SZH6, Q564U4, Q5PPI9, Q5R978, Q641W7, Q6EEF3, Q6EMB2, Q6ZT98, Q80UG8, Q8CHB8, Q8N841, Q8NG68
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
157 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 127 |
| Likely benign | 7 |
| Benign | 4 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
2952 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 2:218740163:GGAGG:G | donor_gain | 1.0000 |
| 2:218740164:GAGG:G | donor_gain | 1.0000 |
| 2:218740164:GAGGG:G | donor_gain | 1.0000 |
| 2:218740166:GG:G | donor_gain | 1.0000 |
| 2:218740167:GG:G | donor_gain | 1.0000 |
| 2:218740168:G:GG | donor_gain | 1.0000 |
| 2:218740168:GTGA:G | donor_loss | 1.0000 |
| 2:218740169:T:A | donor_loss | 1.0000 |
| 2:218740517:CTA:C | acceptor_loss | 1.0000 |
| 2:218740518:TA:T | acceptor_loss | 1.0000 |
| 2:218740519:A:AG | acceptor_gain | 1.0000 |
| 2:218740520:G:A | acceptor_loss | 1.0000 |
| 2:218740520:G:GG | acceptor_gain | 1.0000 |
| 2:218740520:GGA:G | acceptor_gain | 1.0000 |
| 2:218740582:TAGG:T | donor_loss | 1.0000 |
| 2:218740583:AGGTA:A | donor_loss | 1.0000 |
| 2:218740584:GGT:G | donor_loss | 1.0000 |
| 2:218740585:G:T | donor_loss | 1.0000 |
| 2:218740586:T:G | donor_loss | 1.0000 |
| 2:218745680:A:AG | acceptor_gain | 1.0000 |
| 2:218745800:AA:A | donor_gain | 1.0000 |
| 2:218745802:G:GG | donor_gain | 1.0000 |
| 2:218747002:GCTAA:G | acceptor_gain | 1.0000 |
| 2:218747191:GCCA:G | donor_gain | 1.0000 |
| 2:218747195:G:GG | donor_gain | 1.0000 |
| 2:218747288:A:AG | acceptor_gain | 1.0000 |
| 2:218747289:G:GG | acceptor_gain | 1.0000 |
| 2:218747289:GCCA:G | acceptor_gain | 1.0000 |
| 2:218747720:TTGC:T | donor_gain | 1.0000 |
| 2:218747726:G:GG | donor_gain | 1.0000 |
AlphaMissense
7879 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 2:218745729:T:A | W609R | 1.000 |
| 2:218745729:T:C | W609R | 1.000 |
| 2:218746178:T:A | W641R | 1.000 |
| 2:218746178:T:C | W641R | 1.000 |
| 2:218747037:G:C | R670T | 1.000 |
| 2:218747039:A:C | K671Q | 1.000 |
| 2:218747041:G:C | K671N | 1.000 |
| 2:218747041:G:T | K671N | 1.000 |
| 2:218747180:T:A | W718R | 1.000 |
| 2:218747180:T:C | W718R | 1.000 |
| 2:218748156:C:A | N810K | 1.000 |
| 2:218748156:C:G | N810K | 1.000 |
| 2:218749330:A:T | D893V | 1.000 |
| 2:218745760:T:A | V619D | 0.999 |
| 2:218746166:T:A | W637R | 0.999 |
| 2:218746166:T:C | W637R | 0.999 |
| 2:218746180:G:C | W641C | 0.999 |
| 2:218746180:G:T | W641C | 0.999 |
| 2:218747008:C:A | N660K | 0.999 |
| 2:218747008:C:G | N660K | 0.999 |
| 2:218747009:C:G | H661D | 0.999 |
| 2:218747024:T:C | F666L | 0.999 |
| 2:218747026:C:A | F666L | 0.999 |
| 2:218747026:C:G | F666L | 0.999 |
| 2:218747033:G:A | G669R | 0.999 |
| 2:218747033:G:C | G669R | 0.999 |
| 2:218747033:G:T | G669W | 0.999 |
| 2:218747034:G:A | G669E | 0.999 |
| 2:218747037:G:T | R670M | 0.999 |
| 2:218747038:G:C | R670S | 0.999 |
dbSNP variants (sampled 300 via entrez): RS1000142178 (2:218712547 C>T), RS1000152674 (2:218736302 T>C), RS1000167682 (2:218752078 T>A), RS1000266793 (2:218759209 C>T), RS1000289072 (2:218743015 G>A), RS1000298137 (2:218744839 C>T), RS1000375787 (2:218756813 A>C,T), RS1000431865 (2:218749898 T>G), RS1000510590 (2:218713585 G>A), RS1000571296 (2:218718368 ATTTTC>A), RS1000597591 (2:218709025 G>A), RS1000630851 (2:218746676 G>A,C,T), RS1000661829 (2:218724715 C>CTGCCATTT), RS1000708056 (2:218751522 A>G,T), RS1000781731 (2:218728163 T>C,G)
Disease associations
OMIM: gene MIM:618738 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
7 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001664_1 | Amyotrophic lateral sclerosis | 6.000000e-07 |
| GCST002702_116 | Height | 2.000000e-08 |
| GCST006661_114 | Male-pattern baldness | 2.000000e-16 |
| GCST010083_351 | Hemoglobin levels | 1.000000e-15 |
| GCST90020025_1749 | Waist-to-hip ratio adjusted for BMI | 2.000000e-10 |
| GCST90020027_590 | Waist-hip index | 9.000000e-11 |
| GCST90020029_984 | Waist circumference adjusted for body mass index | 3.000000e-09 |
EFO canonical traits (3, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004509 | hemoglobin measurement |
| EFO:0007788 | BMI-adjusted waist-hip ratio |
| EFO:0007789 | BMI-adjusted waist circumference |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
19 total (human), top 19 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Cyclosporine | increases expression | 2 |
| dicrotophos | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| pirinixic acid | affects binding, increases activity, increases expression | 1 |
| bisphenol A | increases methylation | 1 |
| hydroxyhydroquinone | increases expression | 1 |
| beta-lapachone | increases expression | 1 |
| sodium arsenite | increases expression | 1 |
| cobaltous chloride | decreases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| K 7174 | increases expression | 1 |
| Sunitinib | increases expression | 1 |
| Benzo(a)pyrene | increases expression | 1 |
| Caffeine | increases phosphorylation | 1 |
| Doxorubicin | decreases expression | 1 |
| Estradiol | increases expression | 1 |
| Formaldehyde | decreases expression | 1 |
| Tretinoin | increases expression | 1 |
| Copper Sulfate | increases expression | 1 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.