TWIST1
gene geneOn this page
Also known as SCSH-twistBPES2bHLHa38CRS1
Summary
TWIST1 (twist family bHLH transcription factor 1, HGNC:12428) is a protein-coding gene on chromosome 7p21.1, encoding Twist-related protein 1 (Q15672). Acts as a transcriptional regulator. It is haploinsufficient (ClinGen: sufficient evidence).
This gene encodes a basic helix-loop-helix (bHLH) transcription factor that plays an important role in embryonic development. The encoded protein forms both homodimers and heterodimers that bind to DNA E box sequences and regulate the transcription of genes involved in cranial suture closure during skull development. This protein may also regulate neural tube closure, limb development and brown fat metabolism. This gene is hypermethylated and overexpressed in multiple human cancers, and the encoded protein promotes tumor cell invasion and metastasis, as well as metastatic recurrence. Mutations in this gene cause Saethre-Chotzen syndrome in human patients, which is characterized by craniosynostosis, ptosis and hypertelorism.
Source: NCBI Gene 7291 — RefSeq curated summary.
At a glance
- Gene–disease (curated): Saethre-Chotzen syndrome (Definitive, ClinGen) — +6 more curated relationships
- GWAS associations: 22
- Clinical variants (ClinVar): 201 total — 49 pathogenic, 14 likely-pathogenic
- Phenotypes (HPO): 147
- Dosage sensitivity (ClinGen): haploinsufficiency sufficient evidence, triplosensitivity no evidence
- Transcription factor: yes — 85 downstream targets (CollecTRI)
- MANE Select transcript:
NM_000474
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:12428 |
| Approved symbol | TWIST1 |
| Name | twist family bHLH transcription factor 1 |
| Location | 7p21.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | SCS, H-twist, BPES2, bHLHa38, CRS1 |
| Ensembl gene | ENSG00000122691 |
| Ensembl biotype | protein_coding |
| OMIM | 601622 |
| Entrez | 7291 |
Gene structure
Transcript identifiers
Ensembl transcripts: 3 — 2 nonsense_mediated_decay, 1 protein_coding
ENST00000242261, ENST00000354571, ENST00000443687
RefSeq mRNA: 1 — MANE Select: NM_000474
NM_000474
CCDS: CCDS5367
Canonical transcript exons
ENST00000242261 — 2 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000831889 | 19116671 | 19117636 |
| ENSE00001423703 | 19115468 | 19116131 |
Expression profiles
Bgee: expression breadth ubiquitous, 233 present calls, max score 97.10.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 29.1233 / max 946.2288, expressed in 1241 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 82949 | 24.3658 | 1143 |
| 82948 | 4.4584 | 995 |
| 82946 | 0.2473 | 121 |
| 82947 | 0.0518 | 12 |
Top tissues by expression
275 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| periodontal ligament | UBERON:0008266 | 97.10 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 96.62 | gold quality |
| oocyte | CL:0000023 | 95.71 | gold quality |
| buccal mucosa cell | CL:0002336 | 95.27 | gold quality |
| tendon of biceps brachii | UBERON:0008188 | 94.30 | gold quality |
| pericardium | UBERON:0002407 | 93.67 | gold quality |
| parietal pleura | UBERON:0002400 | 92.70 | gold quality |
| mammary duct | UBERON:0001765 | 92.08 | gold quality |
| placenta | UBERON:0001987 | 91.79 | gold quality |
| stromal cell of endometrium | CL:0002255 | 91.70 | gold quality |
| subcutaneous adipose tissue | UBERON:0002190 | 91.13 | gold quality |
| skin of hip | UBERON:0001554 | 91.04 | gold quality |
| thoracic mammary gland | UBERON:0005200 | 90.50 | gold quality |
| mammary gland | UBERON:0001911 | 90.47 | gold quality |
| nipple | UBERON:0002030 | 89.86 | gold quality |
| epithelium of mammary gland | UBERON:0003244 | 89.80 | gold quality |
| upper arm skin | UBERON:0004263 | 89.31 | gold quality |
| blood vessel layer | UBERON:0004797 | 89.24 | gold quality |
| adipose tissue | UBERON:0001013 | 88.87 | gold quality |
| secondary oocyte | CL:0000655 | 88.74 | gold quality |
| connective tissue | UBERON:0002384 | 88.62 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 88.12 | gold quality |
| upper leg skin | UBERON:0004262 | 87.36 | gold quality |
| cartilage tissue | UBERON:0002418 | 87.20 | gold quality |
| zone of skin | UBERON:0000014 | 86.66 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 86.27 | gold quality |
| skin of leg | UBERON:0001511 | 86.16 | gold quality |
| oral cavity | UBERON:0000167 | 85.93 | gold quality |
| skin of abdomen | UBERON:0001416 | 85.91 | gold quality |
| tendon | UBERON:0000043 | 85.75 | gold quality |
Single-cell (SCXA)
Detected in 4 experiment(s), a significant marker in 4.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-56 | yes | 844.57 |
| E-MTAB-9388 | yes | 12.17 |
| E-ANND-3 | yes | 10.82 |
| E-MTAB-7249 | yes | 2.46 |
Regulation
Is transcription factor: yes
Downstream targets (CollecTRI)
85 targets.
| Target | Regulation |
|---|---|
| ACAN | Repression |
| AKR1C2 | Activation |
| AKT2 | Activation |
| ALX3 | Unknown |
| AR | Unknown |
| ATM | Activation |
| BCL2 | Unknown |
| BGLAP | Unknown |
| BMI1 | Activation |
| CAT | |
| CCL2 | Activation |
| CCN5 | |
| CD24 | Unknown |
| CD44 | Activation |
| CDH1 | Repression |
| CDH11 | Activation |
| CDH17 | |
| CDH2 | Unknown |
| CDH5 | Unknown |
| CDKN1A | Unknown |
| CDKN2A | Repression |
| CLDN4 | Unknown |
| CLDN7 | Unknown |
| CLU | Unknown |
| COL1A2 | Activation |
| COL2A1 | Repression |
| CTPS1 | Activation |
| CXCL12 | Activation |
| CXCL8 | Activation |
| DKK1 | Unknown |
JASPAR motifs
| Motif | Name | Family |
|---|---|---|
| MA1123.1 | TWIST1 | Tal-related |
| MA1123.2 | TWIST1 | Tal-related |
| MA1123.3 | TWIST1 | Tal-related |
JASPAR matrix evidence (PMIDs): PMID:25762439, PMID:29453333
Upstream regulators (CollecTRI, top): ATF3, CTNNB1, DLX4, ETV4, EZH2, FOXO1, FOXO3, FOXQ1, HDAC2, HIF1A, HMGA1, HMGA2, KLF17, NCOA1, NKX3-1, OVOL2, PER2, POU2F1, PPARD, PROX1, RELA, RUNX2, SNAI1, SOX2, SOX5, SOX9, SP1, STAT3, SUZ12, TP53
miRNA regulators (miRDB)
86 targeting TWIST1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4476 | 100.00 | 68.18 | 2030 |
| HSA-MIR-6876-5P | 100.00 | 67.68 | 2126 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-9-5P | 100.00 | 72.28 | 2361 |
| HSA-LET-7A-3P | 100.00 | 74.03 | 3932 |
| HSA-LET-7B-3P | 100.00 | 74.08 | 3913 |
| HSA-LET-7F-1-3P | 100.00 | 74.02 | 3928 |
| HSA-MIR-98-3P | 100.00 | 74.08 | 3907 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-6833-3P | 100.00 | 70.63 | 3197 |
| HSA-MIR-32-5P | 99.98 | 75.21 | 1964 |
| HSA-MIR-92A-3P | 99.98 | 75.21 | 1960 |
| HSA-MIR-92B-3P | 99.98 | 75.25 | 1955 |
| HSA-MIR-520D-5P | 99.98 | 73.34 | 4883 |
| HSA-MIR-524-5P | 99.98 | 73.43 | 4882 |
| HSA-MIR-25-3P | 99.98 | 74.60 | 1817 |
| HSA-MIR-363-3P | 99.98 | 74.72 | 1821 |
| HSA-MIR-367-3P | 99.98 | 74.83 | 1819 |
| HSA-MIR-4267 | 99.96 | 66.53 | 2368 |
| HSA-MIR-3912-5P | 99.95 | 66.11 | 925 |
| HSA-MIR-6809-3P | 99.91 | 71.45 | 3814 |
| HSA-MIR-4753-3P | 99.90 | 71.03 | 3786 |
| HSA-MIR-95-5P | 99.89 | 72.17 | 3973 |
| HSA-MIR-137-3P | 99.87 | 74.74 | 2401 |
| HSA-MIR-576-5P | 99.84 | 70.46 | 2582 |
| HSA-MIR-130B-5P | 99.83 | 68.50 | 1888 |
| HSA-MIR-3121-3P | 99.82 | 71.96 | 3630 |
| HSA-MIR-489-3P | 99.80 | 66.46 | 839 |
| HSA-MIR-4517 | 99.76 | 69.19 | 1867 |
| HSA-MIR-7856-5P | 99.75 | 69.99 | 2901 |
Functional genomics
ClinGen dosage: haploinsufficiency 3 (sufficient evidence), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 40)
- Twist1 and Twist2 antagonize the ARF/p53 pathway. This is the first report suggesting a role for Twist genes as oncogenes (PMID:10485844)
- new TWIST mutation (7p21) with variable eyelid manifestations supports locus homogeneity of BPES at 3q22 (PMID:11474656)
- Deletion of 18 nucleotides or insertion of three, 15, or 21 nucleotides was not consistently associated with clinical disease and was conclude that they are at most weakly pathogenic. (PMID:11748846)
- Identified direct paternal transmission of a novel missense TWIST mutation in the highly conserved Helix II domain of this bHLH-family gene. (PMID:11754069)
- Deficience causes skull osteoblast apoptosis due to increased TNFalpha expression and caspase-2 activation. (PMID:11854168)
- Cooperative E-box regulation of human GLI1 by this protein and USF (PMID:11948912)
- Characterization of a dominant negative C. elegans Twist mutant protein with implications for human Saethre-Chotzen syndrome (PMID:12015302)
- inactivation reduces CBFA1/RUNX2 expression and DNA binding to the osteocalcin promoter in osteoblasts (PMID:12270142)
- One variant is associated with Robinow-Sorauf syndrome. (PMID:12791045)
- The risk for developmental delay in patients with deletions involving the TWIST gene is approximately 90%. (PMID:14513358)
- novel role for TWIST, a basic helix-loop-helix protein, which plays a central role in cell type determination and differentiation, during generation of acquired resistance to taxol in a nasopharyngeal carcinoma cell line, HNE1-T3 (PMID:14724576)
- TWIST1 plays an essential role in tumor metastasis. (PMID:15210113)
- Twist was highly and selectively expressed in T cells of patients with Sezary Syndrome. (PMID:15313894)
- loss of HOXA5 expression could lead to the functional activation of Twist resulting in aberrant cell cycle regulation and promoting breast carcinogenesis (PMID:15545268)
- A reporter assay with the p21 promoter demonstrated that Snail inhibited expression of p21 induced by E2A. Co-expression of Snail with Twist showed additive inhibitory effects. (PMID:15555546)
- H-Twist overexpression in neuroblastomas is responsible for the inhibition of the ARF/p53 pathway involved in the Myc-dependent apoptotic response. (PMID:15607966)
- Misregulation of Twist1 dimerization by post-translational mechanisms underlies phenotypes of individuals with Saethre-Chotzen syndrome (PMID:15735646)
- This analysis further dissects the structure-function relationships of TWIST and corroborates with phenotypic observations of disease expressivity. (PMID:15880747)
- TWIST gene is involved in high-grade pediatric osteosarcomas and is a new marker with a possible initial predictive value. (PMID:15900593)
- Results have identified TWIST as a critical regulator of prostate cancer cell growth and suggest a potential therapeutic approach to inhibit the growth and metastasis of androgen-independent prostate cancer through inactivation of the TWIST gene. (PMID:15958559)
- Overexpression of TWIST protein in a human glioma cell line significantly enhanced tumor cell invasion, a hallmark of high-grade gliomas. (PMID:16229805)
- Twist1 is induced by canonical Wnt signaling and expression of Twist1 strongly inhibited chondrocyte gene expression. (PMID:16293629)
- Twist over-expression induces angiogenesis in a mouse breast cancer model (PMID:16322226)
- Twist may play an important role in the invasion and metastasis of nasopharyngeal carcinoma (PMID:16412561)
- Dimer partner selection is an important mediator of Twist1 function in transgenic mice, providing a mechanistic understanding of craniosynostosis due to TWIST haploinsufficiency. (PMID:16502419)
- This provides genetic evidence that Twist1, Msx2 and Efna4 function together in boundary formation and the pathogenesis of coronal synostosis. (PMID:16540516)
- Twist overexpression plays a role in destabilizing the genome, thus promoting chromosomal instability. (PMID:16737925)
- These results implicate Twist proteins in regulation of TNFalpha production by antiinflammatory factors and pathways, and provide a mechanism by which type I IFNs and Axl receptors suppress inflammatory cytokine production. (PMID:16831897)
- Twist may act as a negative regulator of osteoblastic differentiation in periodontal ligament cells (PMID:16888803)
- Twist haploinsufficiency results in decreased Cbl-mediated PI3K degradation in osteoblasts. (PMID:17003487)
- Patients with TWIST gene mutations may have more ophthalmic abnormalities, including more strabismus, ptosis, NLDO, astigmatism, vertical deviations, and amblyopia compared with patients with FGFR3 gene mutations. (PMID:17070479)
- suggest critical implication of the CCT repeats in association with Sp1 and Sp3 factors in sustaining expression of the TWIST1 gene in mesenchymal cells (PMID:17157810)
- Twist, a novel oncogene, is upregulated in pancreatic cancer (PMID:17236203)
- Induction of Twist by a human viral oncoprotein LMP1 directly contributes to the metastatic nature of nasopharyngeal carcinoma. (PMID:17332324)
- Twist is a positive transcriptional regulator of AKT2 expression;Twist-AKT2 signaling is involved in promoting invasive ability and survival of breast cancer cells. (PMID:17332325)
- Some TWIST1 mutations in the RUNX2 binding site are associated with craniosynostosis. (PMID:17343269)
- TWIST may serve as a prognostic marker for high-grade prostatic cancer in humans; up-regulation of TWIST with aberrant expression of E-cadherin may predict development of metastatic disease. (PMID:17394502)
- Data suggest that Twist-1 and -2 play an important role in NF-kappaB-dependent chemoresistance. (PMID:17403902)
- no evidence that mosaicism for mutations, normally associated with syndromal forms of craniosynostosis, occur in single suture craniosynostosis (PMID:17414280)
- findings suggest that reduced expression of TWIST suppresses the multistep process of peritoneal dissemination (detachment from the primary lesion, adhesion to MCs and invasion of MCs. (PMID:17487558)
Cross-species orthologs
9 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Twist1 | ENSMUSG00000035799 |
| rattus_norvegicus | Twist1 | ENSRNOG00000011101 |
| drosophila_melanogaster | twi | FBGN0003900 |
| drosophila_melanogaster | HLH54F | FBGN0022740 |
| drosophila_melanogaster | Hand | FBGN0032209 |
| drosophila_melanogaster | Fer3 | FBGN0037937 |
| drosophila_melanogaster | CG33557 | FBGN0053557 |
| caenorhabditis_elegans | WBGENE00001953 | |
| caenorhabditis_elegans | WBGENE00001956 |
Paralogs (13): HAND1 (ENSG00000113196), TCF21 (ENSG00000118526), TCF15 (ENSG00000125878), FERD3L (ENSG00000146618), TCF23 (ENSG00000163792), HAND2 (ENSG00000164107), PTF1A (ENSG00000168267), MSC (ENSG00000178860), FIGLA (ENSG00000183733), BHLHA9 (ENSG00000205899), TWIST2 (ENSG00000233608), SCX (ENSG00000260428), TCF24 (ENSG00000261787)
Protein
Protein identifiers
Twist-related protein 1 — Q15672 (reviewed: Q15672)
Alternative names: Class A basic helix-loop-helix protein 38, H-twist
All UniProt accessions (3): Q15672, H7BY00, H7C4D7
UniProt curated annotations — full annotation on UniProt →
Function. Acts as a transcriptional regulator. Inhibits myogenesis by sequestrating E proteins, inhibiting trans-activation by MEF2, and inhibiting DNA-binding by MYOD1 through physical interaction. This interaction probably involves the basic domains of both proteins. Also represses expression of pro-inflammatory cytokines such as TNFA and IL1B. Regulates cranial suture patterning and fusion. Activates transcription as a heterodimer with E proteins. Regulates gene expression differentially, depending on dimer composition. Homodimers induce expression of FGFR2 and POSTN while heterodimers repress FGFR2 and POSTN expression and induce THBS1 expression. Heterodimerization is also required for osteoblast differentiation. Represses the activity of the circadian transcriptional activator: NPAS2-BMAL1 heterodimer.
Subunit / interactions. Efficient DNA binding requires dimerization with another bHLH protein. Homodimer or heterodimer with E proteins such as TCF3. ID1 binds preferentially to TCF3 but does not interact efficiently with TWIST1 so ID1 levels control the amount of TCF3 available to dimerize with TWIST1 and thus determine the type of dimer formed.
Subcellular location. Nucleus.
Tissue specificity. Subset of mesodermal cells.
Disease relevance. Saethre-Chotzen syndrome (SCS) [MIM:101400] A craniosynostosis syndrome characterized by coronal synostosis, brachycephaly, low frontal hairline, facial asymmetry, hypertelorism, broad halluces, and clinodactyly. The disease is caused by variants affecting the gene represented in this entry. Robinow-Sorauf syndrome (RSS) [MIM:180750] An autosomal dominant syndrome characterized by craniosynostosis, asymmetry of orbits, flat face, hypertelorism, a thin, long, and pointed nose, shallow orbits, strabismus, and broad great toes with a duplication of the distal phalanx. RSS is clinically similar to Saethre-Chotzen syndrome, with the most characteristic additional feature in Robinow-Sorauf syndrome being a bifid or partially duplicated hallux. The disease is caused by variants affecting the gene represented in this entry. Craniosynostosis 1 (CRS1) [MIM:123100] A primary abnormality of skull growth involving premature fusion of one or more cranial sutures. The growth velocity of the skull often cannot match that of the developing brain resulting in an abnormal head shape and, in some cases, increased intracranial pressure, which must be treated promptly to avoid permanent neurodevelopmental disability. The disease is caused by variants affecting the gene represented in this entry. Sweeney-Cox syndrome (SWCOS) [MIM:617746] An autosomal dominant syndrome characterized by facial dysostosis, including hypertelorism, deficiencies of the eyelids and facial bones, cleft palate/velopharyngeal insufficiency, and low-set cupped ears. The disease is caused by variants affecting the gene represented in this entry.
RefSeq proteins (1): NP_000465* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR011598 | bHLH_dom | Domain |
| IPR036638 | HLH_DNA-bd_sf | Homologous_superfamily |
| IPR047093 | TWIST1_bHLH | Domain |
| IPR050283 | E-box_TF_Regulators | Family |
Pfam: PF00010
UniProt features (28 total): sequence variant 11, sequence conflict 7, compositionally biased region 4, region of interest 2, helix 2, chain 1, domain 1
Structure
Experimental structures (PDB)
2 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 8OSB | X-RAY DIFFRACTION | 2.9 |
| 2MJV | SOLUTION NMR |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q15672-F1 | 68.89 | 0.23 |
Function
Pathways and Gene Ontology
Reactome pathways
5 pathways
| ID | Pathway |
|---|---|
| R-HSA-6785807 | Interleukin-4 and Interleukin-13 signaling |
| R-HSA-8878166 | Transcriptional regulation by RUNX2 |
| R-HSA-8939902 | Regulation of RUNX2 expression and activity |
| R-HSA-9725371 | Nuclear events stimulated by ALK signaling in cancer |
| R-HSA-9764725 | Negative Regulation of CDH1 Gene Transcription |
MSigDB gene sets: 797 (showing top):
GSE18804_SPLEEN_MACROPHAGE_VS_TUMORAL_MACROPHAGE_UP, GOBP_MORPHOGENESIS_OF_AN_EPITHELIUM, GOBP_REGULATION_OF_DOUBLE_STRAND_BREAK_REPAIR, GOBP_LIPID_MODIFICATION, GOBP_FATTY_ACID_CATABOLIC_PROCESS, GOBP_EMBRYO_DEVELOPMENT_ENDING_IN_BIRTH_OR_EGG_HATCHING, GOBP_EPITHELIUM_DEVELOPMENT, GOBP_CELL_MIGRATION_INVOLVED_IN_HEART_DEVELOPMENT, GOBP_REGULATION_OF_SKELETAL_MUSCLE_TISSUE_DEVELOPMENT, GOBP_MUSCLE_TISSUE_DEVELOPMENT, BENPORATH_ES_WITH_H3K27ME3, HNF3ALPHA_Q6, GOBP_SKELETAL_SYSTEM_DEVELOPMENT, REACTOME_CYTOKINE_SIGNALING_IN_IMMUNE_SYSTEM, GOBP_POSITIVE_REGULATION_OF_EPITHELIAL_TO_MESENCHYMAL_TRANSITION
GO Biological Process (58): negative regulation of transcription by RNA polymerase II (GO:0000122), ossification (GO:0001503), osteoblast differentiation (GO:0001649), in utero embryonic development (GO:0001701), neuron migration (GO:0001764), neural tube closure (GO:0001843), aortic valve morphogenesis (GO:0003180), mitral valve morphogenesis (GO:0003183), endocardial cushion morphogenesis (GO:0003203), cardiac neural crest cell migration involved in outflow tract morphogenesis (GO:0003253), regulation of transcription by RNA polymerase II (GO:0006357), muscle organ development (GO:0007517), positive regulation of gene expression (GO:0010628), positive regulation of epithelial to mesenchymal transition (GO:0010718), negative regulation of macrophage cytokine production (GO:0010936), positive regulation of cell migration (GO:0030335), regulation of bone mineralization (GO:0030500), positive regulation of fatty acid beta-oxidation (GO:0032000), developmental process (GO:0032502), negative regulation of tumor necrosis factor production (GO:0032720), positive regulation of interleukin-6 production (GO:0032755), positive regulation of tumor necrosis factor production (GO:0032760), embryonic forelimb morphogenesis (GO:0035115), embryonic hindlimb morphogenesis (GO:0035116), negative regulation of peroxisome proliferator activated receptor signaling pathway (GO:0035359), outer ear morphogenesis (GO:0042473), embryonic digit morphogenesis (GO:0042733), negative regulation of apoptotic process (GO:0043066), negative regulation of DNA damage response, signal transduction by p53 class mediator (GO:0043518), negative regulation of osteoblast differentiation (GO:0045668), positive regulation of angiogenesis (GO:0045766), negative regulation of DNA-templated transcription (GO:0045892), positive regulation of transcription by RNA polymerase II (GO:0045944), rhythmic process (GO:0048511), negative regulation of skeletal muscle tissue development (GO:0048642), embryonic cranial skeleton morphogenesis (GO:0048701), negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (GO:0051898), cranial suture morphogenesis (GO:0060363), embryonic camera-type eye formation (GO:0060900), eyelid development in camera-type eye (GO:0061029)
GO Molecular Function (17): RNA polymerase II transcription regulatory region sequence-specific DNA binding (GO:0000977), DNA-binding transcription factor activity, RNA polymerase II-specific (GO:0000981), cis-regulatory region sequence-specific DNA binding (GO:0000987), DNA-binding transcription repressor activity (GO:0001217), transcription coregulator binding (GO:0001221), DNA-binding transcription activator activity, RNA polymerase II-specific (GO:0001228), protein domain specific binding (GO:0019904), protein homodimerization activity (GO:0042803), histone deacetylase binding (GO:0042826), bHLH transcription factor binding (GO:0043425), E-box binding (GO:0070888), DNA-binding transcription factor binding (GO:0140297), DNA binding (GO:0003677), DNA-binding transcription factor activity (GO:0003700), protein binding (GO:0005515), identical protein binding (GO:0042802), protein dimerization activity (GO:0046983)
GO Cellular Component (3): chromatin (GO:0000785), nucleus (GO:0005634), nucleoplasm (GO:0005654)
Reactome top-level categories
Rollup of top-5 pathways:
| Category | Pathways |
|---|---|
| Signaling by Interleukins | 1 |
| Generic Transcription Pathway | 1 |
| Transcriptional regulation by RUNX2 | 1 |
| Signaling by ALK fusions and activated point mutants | 1 |
| Regulation of CDH1 Gene Transcription | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| transcription cis-regulatory region binding | 4 |
| protein binding | 3 |
| regulation of transcription by RNA polymerase II | 2 |
| transcription by RNA polymerase II | 2 |
| negative regulation of DNA-templated transcription | 2 |
| cell migration | 2 |
| regulation of DNA-templated transcription | 2 |
| RNA polymerase II transcription regulatory region sequence-specific DNA binding | 2 |
| DNA-binding transcription factor activity | 2 |
| transcription factor binding | 2 |
| cellular anatomical structure | 2 |
| multicellular organismal process | 1 |
| ossification | 1 |
| cell differentiation | 1 |
| chordate embryonic development | 1 |
| generation of neurons | 1 |
| primary neural tube formation | 1 |
| tube closure | 1 |
| aortic valve development | 1 |
| heart valve morphogenesis | 1 |
| mitral valve development | 1 |
| atrioventricular valve morphogenesis | 1 |
| heart morphogenesis | 1 |
| endocardial cushion development | 1 |
| mesenchyme morphogenesis | 1 |
| neural crest cell migration | 1 |
| outflow tract morphogenesis | 1 |
| cell migration involved in heart development | 1 |
| cardiac neural crest cell development involved in outflow tract morphogenesis | 1 |
| animal organ development | 1 |
| muscle structure development | 1 |
| gene expression | 1 |
| regulation of gene expression | 1 |
| positive regulation of macromolecule biosynthetic process | 1 |
| epithelial to mesenchymal transition | 1 |
| regulation of epithelial to mesenchymal transition | 1 |
| positive regulation of cell differentiation | 1 |
| positive regulation of multicellular organismal process | 1 |
| negative regulation of cytokine production involved in immune response | 1 |
| macrophage cytokine production | 1 |
Protein interactions and networks
STRING
3276 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| TWIST1 | G3BP2 | Q9UN86 | 946 |
| TWIST1 | SNAI2 | O43623 | 936 |
| TWIST1 | TP53 | P04637 | 914 |
| TWIST1 | RUNX2 | Q13950 | 905 |
| TWIST1 | MSX2 | P35548 | 898 |
| TWIST1 | SNAI1 | O95863 | 894 |
| TWIST1 | ZEB1 | P37275 | 890 |
| TWIST1 | BMI1 | P35226 | 886 |
| TWIST1 | R4GMX3 | R4GMX3 | 884 |
| TWIST1 | FGFR3 | P22607 | 881 |
| TWIST1 | FGFR2 | P18443 | 878 |
| TWIST1 | CDH1 | P12830 | 849 |
| TWIST1 | FGFR1 | P11362 | 847 |
| TWIST1 | EP300 | Q09472 | 846 |
| TWIST1 | SMAD4 | Q13485 | 845 |
IntAct
86 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| TWIST1 | TCF4 | psi-mi:“MI:0915”(physical association) | 0.850 |
| TWIST1 | TCF4 | psi-mi:“MI:0403”(colocalization) | 0.850 |
| TWIST1 | TP53 | psi-mi:“MI:0915”(physical association) | 0.820 |
| TP53 | TWIST1 | psi-mi:“MI:0407”(direct interaction) | 0.820 |
| TWIST1 | TP53 | psi-mi:“MI:0914”(association) | 0.820 |
| TP53 | TWIST1 | psi-mi:“MI:0915”(physical association) | 0.820 |
| TWIST1 | TP53 | psi-mi:“MI:0407”(direct interaction) | 0.820 |
| H4C16 | BRD4 | psi-mi:“MI:0915”(physical association) | 0.740 |
| BRD4 | H4C16 | psi-mi:“MI:0914”(association) | 0.740 |
| H4C16 | BRD4 | psi-mi:“MI:0914”(association) | 0.740 |
| TCF3 | TWIST1 | psi-mi:“MI:0915”(physical association) | 0.710 |
| TWIST1 | TCF3 | psi-mi:“MI:0915”(physical association) | 0.710 |
| TWIST1 | TCF3 | psi-mi:“MI:0403”(colocalization) | 0.710 |
| CETN1 | SFI1 | psi-mi:“MI:0914”(association) | 0.640 |
| KMT5A | TWIST1 | psi-mi:“MI:0915”(physical association) | 0.630 |
| KMT5A | TWIST1 | psi-mi:“MI:0407”(direct interaction) | 0.630 |
BioGRID (145): BCL6 (Reconstituted Complex), TP53 (Reconstituted Complex), TCF4 (Reconstituted Complex), YY1 (Reconstituted Complex), NEIL3 (Reconstituted Complex), YY2 (Reconstituted Complex), ZIC3 (Reconstituted Complex), TWIST1 (Synthetic Lethality), TWIST1 (Two-hybrid), TWIST1 (Affinity Capture-MS), TWIST1 (Affinity Capture-MS), BTRC (Affinity Capture-Western), TWIST1 (Affinity Capture-Western), PAQR3 (Affinity Capture-Western), TWIST1 (Affinity Capture-Western)
ESM2 similar proteins: O35437, O43680, O60682, O88940, O93507, O96004, P22091, P24899, P27792, P48985, P57100, P59101, P70447, P70562, P70595, P70660, P70661, P79782, P97832, Q02346, Q02575, Q02576, Q02577, Q12870, Q15672, Q5E9S3, Q60539, Q60756, Q64124, Q64221, Q64279, Q7JGP2, Q7RTU7, Q8BGW3, Q8MI03, Q8MI06, Q8MIB5, Q8MIB9, Q8MID5, Q8MIE7
Diamond homologs: A8E5T6, B6VQA1, O13125, O13126, O16867, O35437, O42202, O42606, O43680, O57598, O60682, O73615, O73823, O88940, O93507, O96004, O96642, P13903, P17542, P22091, P24899, P26687, P46581, P48985, P48987, P57100, P57101, P57102, P59101, P61295, P61296, P70661, P79765, P79782, P97831, P97832, Q02575, Q02576, Q02577, Q0VCE2
SIGNOR signaling
60 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| AKT1 | up-regulates | TWIST1 | phosphorylation |
| MAPK1 | up-regulates | TWIST1 | phosphorylation |
| MAPK11 | up-regulates | TWIST1 | phosphorylation |
| MAPK14 | up-regulates | TWIST1 | phosphorylation |
| MAPK3 | up-regulates | TWIST1 | phosphorylation |
| MAPK8 | up-regulates | TWIST1 | phosphorylation |
| CSNK2A1 | up-regulates | TWIST1 | phosphorylation |
| TWIST1 | down-regulates | CSNK2A1 | |
| AKT | up-regulates | TWIST1 | phosphorylation |
| CTDSP1 | “down-regulates activity” | TWIST1 | dephosphorylation |
| EZH2 | “down-regulates quantity by repression” | TWIST1 | “transcriptional regulation” |
| POU2F1 | “up-regulates quantity by expression” | TWIST1 | “transcriptional regulation” |
| PER2 | “down-regulates quantity by repression” | TWIST1 | “transcriptional regulation” |
| HDAC2 | “down-regulates quantity by repression” | TWIST1 | “transcriptional regulation” |
| SUZ12 | “down-regulates quantity by repression” | TWIST1 | “transcriptional regulation” |
| RUNX2 | “up-regulates quantity by expression” | TWIST1 | “transcriptional regulation” |
| TWIST1 | “down-regulates quantity by repression” | CDH1 | “transcriptional regulation” |
| TWIST1 | “up-regulates quantity by expression” | AKR1C2 | “transcriptional regulation” |
| TWIST1 | “up-regulates quantity by expression” | ATM | “transcriptional regulation” |
| TWIST1 | “up-regulates quantity by expression” | CD44 | “transcriptional regulation” |
| TWIST1 | “up-regulates quantity by expression” | ICAM1 | “transcriptional regulation” |
| TWIST1 | “up-regulates quantity by expression” | ITGB1 | “transcriptional regulation” |
| TWIST1 | “up-regulates quantity by expression” | CTPS1 | “transcriptional regulation” |
| TWIST1 | “down-regulates quantity by repression” | F2R | “transcriptional regulation” |
| TWIST1 | “up-regulates quantity by expression” | FN1 | “transcriptional regulation” |
| TWIST1 | “up-regulates quantity by expression” | HGF | “transcriptional regulation” |
| TWIST1 | “up-regulates quantity by expression” | FAP | “transcriptional regulation” |
| TWIST1 | “up-regulates quantity by expression” | SNAI2 | “transcriptional regulation” |
| TWIST1 | “up-regulates quantity by expression” | MMP2 | “transcriptional regulation” |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 33 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Regulation of PD-L1(CD274) transcription | 6 | 22.5× | 9e-05 |
| Formation of the beta-catenin:TCF transactivating complex | 5 | 20.7× | 8e-04 |
| Estrogen-dependent gene expression | 5 | 13.0× | 2e-03 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| chromatin organization | 6 | 18.6× | 7e-05 |
| chromatin remodeling | 6 | 13.7× | 3e-04 |
| DNA damage response | 7 | 11.7× | 1e-04 |
| regulation of cell cycle | 5 | 11.7× | 3e-03 |
| positive regulation of apoptotic process | 5 | 8.9× | 7e-03 |
| positive regulation of gene expression | 7 | 8.5× | 9e-04 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
201 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 49 |
| Likely pathogenic | 14 |
| Uncertain significance | 90 |
| Likely benign | 19 |
| Benign | 1 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1075081 | NM_000474.4(TWIST1):c.54_73del (p.Ser18fs) | Pathogenic |
| 1338420 | NM_000474.4(TWIST1):c.108del (p.Arg37fs) | Pathogenic |
| 1351855 | NM_000474.4(TWIST1):c.400ATC[1] (p.Ile135del) | Pathogenic |
| 1357752 | NC_000007.13:g.(?19156336)(19157207_?)del | Pathogenic |
| 1418275 | NM_000474.4(TWIST1):c.349G>T (p.Glu117Ter) | Pathogenic |
| 1434196 | NM_000474.4(TWIST1):c.258_261dup (p.Gly88fs) | Pathogenic |
| 1451820 | NM_000474.4(TWIST1):c.338_339dup (p.Asn114fs) | Pathogenic |
| 1457074 | NM_000474.4(TWIST1):c.395_415dup (p.Arg132_Leu138dup) | Pathogenic |
| 1458491 | NM_000474.4(TWIST1):c.310G>T (p.Glu104Ter) | Pathogenic |
| 1703561 | GRCh37/hg19 7p21.1(chr7:19152100-19157785) | Pathogenic |
| 1722762 | NM_000474.4(TWIST1):c.-18C>T | Pathogenic |
| 2036363 | NM_000474.4(TWIST1):c.141_145del (p.Gly48fs) | Pathogenic |
| 2093953 | NM_000474.4(TWIST1):c.347G>C (p.Arg116Pro) | Pathogenic |
| 2444186 | NM_000474.4(TWIST1):c.319C>T (p.Gln107Ter) | Pathogenic |
| 2572412 | NM_000474.4(TWIST1):c.351G>T (p.Glu117Asp) | Pathogenic |
| 2572990 | NM_000474.4(TWIST1):c.408del (p.Thr137fs) | Pathogenic |
| 2920608 | NM_000474.4(TWIST1):c.325C>T (p.Gln109Ter) | Pathogenic |
| 2921667 | NM_000474.4(TWIST1):c.211del (p.Gln71fs) | Pathogenic |
| 2941524 | NM_000474.4(TWIST1):c.290_294del (p.Gly97fs) | Pathogenic |
| 2947590 | NM_000474.4(TWIST1):c.79dup (p.Gln27fs) | Pathogenic |
| 3376165 | NM_000474.4(TWIST1):c.346C>T (p.Arg116Trp) | Pathogenic |
| 3757740 | NM_000474.4(TWIST1):c.102del (p.Gly36fs) | Pathogenic |
| 3758878 | NM_000474.4(TWIST1):c.156_165dup (p.Ala56fs) | Pathogenic |
| 3759623 | NM_000474.4(TWIST1):c.124del (p.Ser42fs) | Pathogenic |
| 4083363 | NM_000474.4(TWIST1):c.7C>T (p.Gln3Ter) | Pathogenic |
| 444875 | NM_000474.4(TWIST1):c.350A>T (p.Glu117Val) | Pathogenic |
| 444876 | NM_000474.4(TWIST1):c.350A>G (p.Glu117Gly) | Pathogenic |
| 458686 | NM_000474.4(TWIST1):c.397_417dup (p.Lys133_Pro139dup) | Pathogenic |
| 4783656 | NM_000474.4(TWIST1):c.364C>T (p.Gln122Ter) | Pathogenic |
| 489149 | NM_000474.4(TWIST1):c.419C>A (p.Ser140Ter) | Pathogenic |
SpliceAI
136 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 7:19116665:CCTTA:C | donor_loss | 0.9400 |
| 7:19116666:CTTAC:C | donor_loss | 0.9400 |
| 7:19116667:TTACC:T | donor_loss | 0.9400 |
| 7:19116668:TAC:T | donor_loss | 0.9400 |
| 7:19116669:A:AT | donor_loss | 0.9400 |
| 7:19116670:C:G | donor_loss | 0.9400 |
| 7:19115828:A:C | acceptor_gain | 0.9200 |
| 7:19116129:CAT:C | acceptor_gain | 0.9100 |
| 7:19116770:G:C | donor_gain | 0.8900 |
| 7:19116143:C:T | acceptor_gain | 0.8700 |
| 7:19115824:A:C | acceptor_gain | 0.8500 |
| 7:19116132:C:CC | acceptor_gain | 0.8400 |
| 7:19116130:ATC:A | acceptor_loss | 0.8200 |
| 7:19116131:TCTGC:T | acceptor_loss | 0.8200 |
| 7:19116132:CTG:C | acceptor_loss | 0.8200 |
| 7:19116133:T:A | acceptor_loss | 0.8200 |
| 7:19115827:CA:C | acceptor_gain | 0.8100 |
| 7:19116134:G:C | acceptor_loss | 0.8100 |
| 7:19116794:G:C | donor_gain | 0.7800 |
| 7:19116748:T:TA | donor_gain | 0.7700 |
| 7:19116804:G:A | donor_gain | 0.7700 |
| 7:19116669:A:AC | donor_gain | 0.7500 |
| 7:19116670:C:CC | donor_gain | 0.7500 |
| 7:19116127:GACAT:G | acceptor_gain | 0.6800 |
| 7:19115828:A:AC | acceptor_gain | 0.6300 |
| 7:19116663:GTCCT:G | donor_loss | 0.6300 |
| 7:19116664:TCCTT:T | donor_loss | 0.6300 |
| 7:19116136:A:T | acceptor_loss | 0.6200 |
| 7:19116671:C:G | donor_loss | 0.6200 |
| 7:19116143:C:CT | acceptor_gain | 0.6100 |
AlphaMissense
1313 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 7:19116742:C:G | G194R | 1.000 |
| 7:19116742:C:T | G194R | 1.000 |
| 7:19116746:C:A | M192I | 1.000 |
| 7:19116746:C:G | M192I | 1.000 |
| 7:19116746:C:T | M192I | 1.000 |
| 7:19116747:A:G | M192T | 1.000 |
| 7:19116749:C:A | R191S | 1.000 |
| 7:19116749:C:G | R191S | 1.000 |
| 7:19116750:C:A | R191M | 1.000 |
| 7:19116750:C:G | R191T | 1.000 |
| 7:19116751:T:A | R191W | 1.000 |
| 7:19116752:C:A | W190C | 1.000 |
| 7:19116752:C:G | W190C | 1.000 |
| 7:19116754:A:G | W190R | 1.000 |
| 7:19116754:A:T | W190R | 1.000 |
| 7:19116760:A:G | S188P | 1.000 |
| 7:19116761:G:C | F187L | 1.000 |
| 7:19116761:G:T | F187L | 1.000 |
| 7:19116762:A:C | F187C | 1.000 |
| 7:19116762:A:G | F187S | 1.000 |
| 7:19116763:A:C | F187V | 1.000 |
| 7:19116763:A:G | F187L | 1.000 |
| 7:19116763:A:T | F187I | 1.000 |
| 7:19116765:G:T | A186D | 1.000 |
| 7:19116766:C:G | A186P | 1.000 |
| 7:19116774:A:G | L183P | 1.000 |
| 7:19116774:A:T | L183H | 1.000 |
| 7:19116834:A:G | L163P | 1.000 |
| 7:19116834:A:T | L163H | 1.000 |
| 7:19116846:A:G | L159P | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000849825 (7:19118642 C>T), RS1000882345 (7:19118432 G>A), RS1000888985 (7:19116283 G>A), RS1001785482 (7:19118189 G>A), RS1002148856 (7:19114833 TA>T,TAA), RS1002706240 (7:19117468 T>A,G), RS1004859652 (7:19113418 T>C), RS1004991564 (7:19118935 A>G), RS1005131044 (7:19119128 C>G), RS1005403792 (7:19113797 G>A,T), RS1005656103 (7:19116381 A>G), RS1005709966 (7:19118536 C>A,T), RS1005793813 (7:19116522 G>A,T), RS1005991737 (7:19117886 C>A,G,T), RS1006029158 (7:19115559 G>C)
Disease associations
OMIM: gene MIM:601622 | disease phenotypes: MIM:101400, MIM:123100, MIM:180750, MIM:617746
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| Saethre-Chotzen syndrome | Definitive | Autosomal dominant |
| TWIST1-related craniosynostosis | Strong | Autosomal dominant |
| Sweeney-Cox syndrome | Strong | Autosomal dominant |
| Robinow-Sorauf syndrome | Strong | Autosomal dominant |
| isolated scaphocephaly | Supportive | Autosomal dominant |
| isolated plagiocephaly | Supportive | Autosomal dominant |
| isolated brachycephaly | Supportive | Autosomal dominant |
ClinGen Gene-Disease Validity (3)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| Sweeney-Cox syndrome | Limited | AD |
| Saethre-Chotzen syndrome | Definitive | AD |
| TWIST1-related craniosynostosis | Moderate | AD |
Mondo (7): Saethre-Chotzen syndrome (MONDO:0007042), TWIST1-related craniosynostosis (MONDO:0007399), Robinow-Sorauf syndrome (MONDO:0008391), Sweeney-Cox syndrome (MONDO:0060592), (MONDO:0018112), (MONDO:0018113), (MONDO:0018114)
Orphanet (3): OBSOLETE: Isolated oxycephaly (Orphanet:63440), Saethre-Chotzen syndrome (Orphanet:794), Robinow-Sorauf syndrome (Orphanet:3106)
HPO phenotypes
147 total (30 of 147 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000028 | Cryptorchidism |
| HP:0000160 | Narrow mouth |
| HP:0000175 | Cleft palate |
| HP:0000189 | Narrow palate |
| HP:0000193 | Bifid uvula |
| HP:0000218 | High palate |
| HP:0000220 | Velopharyngeal insufficiency |
| HP:0000248 | Brachycephaly |
| HP:0000260 | Wide anterior fontanel |
| HP:0000262 | Turricephaly |
| HP:0000263 | Oxycephaly |
| HP:0000268 | Dolichocephaly |
| HP:0000269 | Prominent occiput |
| HP:0000270 | Delayed cranial suture closure |
| HP:0000272 | Malar flattening |
| HP:0000286 | Epicanthus |
| HP:0000294 | Low anterior hairline |
| HP:0000316 | Hypertelorism |
| HP:0000322 | Short philtrum |
| HP:0000324 | Facial asymmetry |
| HP:0000327 | Hypoplasia of the maxilla |
| HP:0000337 | Broad forehead |
| HP:0000347 | Micrognathia |
| HP:0000348 | High forehead |
| HP:0000349 | Widow’s peak |
| HP:0000365 | Hearing impairment |
| HP:0000369 | Low-set ears |
| HP:0000377 | Abnormal pinna morphology |
| HP:0000378 | Cupped ear |
GWAS associations
22 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001762_934 | Obesity-related traits | 4.000000e-07 |
| GCST002875_21 | Diisocyanate-induced asthma | 1.000000e-06 |
| GCST003542_192 | Night sleep phenotypes | 3.000000e-06 |
| GCST004125_22 | Type 2 diabetes (age of onset) | 2.000000e-06 |
| GCST005116_33 | Male-pattern baldness | 7.000000e-63 |
| GCST006009_16 | Pulse pressure | 5.000000e-13 |
| GCST007096_94 | Pulse pressure | 1.000000e-37 |
| GCST007097_130 | Pulse pressure | 1.000000e-11 |
| GCST007097_131 | Pulse pressure | 3.000000e-15 |
| GCST007099_80 | Systolic blood pressure | 9.000000e-14 |
| GCST007267_317 | Systolic blood pressure | 3.000000e-21 |
| GCST007268_31 | Diastolic blood pressure | 3.000000e-11 |
| GCST007269_208 | Pulse pressure | 5.000000e-54 |
| GCST007703_113 | Systolic blood pressure | 6.000000e-07 |
| GCST007705_34 | Pulse pressure | 6.000000e-14 |
| GCST010158_1 | Large artery stroke (CCS or TOAST classification) | 4.000000e-16 |
| GCST010159_1 | Large artery stroke (CCS and TOAST classification) | 3.000000e-10 |
| GCST010160_1 | Large artery stroke (TOAST classification) | 8.000000e-14 |
| GCST010161_1 | Large artery stroke (CCSp classification)j | 1.000000e-12 |
| GCST010479_4 | Coronary artery disease | 1.000000e-14 |
| GCST010866_122 | Coronary artery disease | 1.000000e-31 |
| GCST010867_67 | Coronary artery disease | 8.000000e-09 |
EFO canonical traits (5, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0005116 | urinary metabolite measurement |
| EFO:0006995 | response to diisocyanate |
| EFO:0005763 | pulse pressure measurement |
| EFO:0006335 | systolic blood pressure |
| EFO:0006336 | diastolic blood pressure |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| C537183 | Robinow Sorauf syndrome (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
102 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | affects binding, decreases reaction, increases abundance, decreases expression, affects cotreatment (+3 more) | 8 |
| Arsenic | decreases expression, affects expression, decreases response to substance, increases abundance, increases expression (+3 more) | 6 |
| Valproic Acid | affects cotreatment, increases expression | 6 |
| Particulate Matter | affects cotreatment, affects reaction, increases expression, decreases reaction, decreases expression (+1 more) | 6 |
| Air Pollutants | increases abundance, increases expression, decreases expression, decreases reaction | 4 |
| trichostatin A | affects cotreatment, increases expression | 3 |
| Estradiol | decreases expression, affects cotreatment | 3 |
| Aflatoxin B1 | affects expression, decreases expression, decreases methylation | 3 |
| osimertinib | increases cleavage, decreases response to substance, decreases cleavage, affects response to substance, decreases reaction | 2 |
| thymoquinone | decreases expression, decreases reaction, increases reaction | 2 |
| methylmercuric chloride | decreases expression, increases expression | 2 |
| bisphenol A | decreases expression, increases methylation | 2 |
| mercuric bromide | increases expression, affects cotreatment | 2 |
| cordycepin | decreases expression, decreases localization, affects cotreatment, increases reaction | 2 |
| 2-(4-morpholinyl)-8-phenyl-4H-1-benzopyran-4-one | decreases reaction, increases abundance, increases expression, increases reaction, decreases expression | 2 |
| SB 203580 | decreases reaction, increases abundance, increases expression, decreases expression | 2 |
| U 0126 | decreases reaction, increases expression, increases abundance, increases reaction | 2 |
| stattic | decreases reaction, increases abundance, increases expression, increases reaction | 2 |
| Panobinostat | affects cotreatment, increases expression | 2 |
| Benzo(a)pyrene | increases expression, affects methylation | 2 |
| Cisplatin | increases expression, decreases reaction, decreases expression | 2 |
| Doxorubicin | decreases expression, increases expression, affects cotreatment | 2 |
| Glucose | decreases expression, increases expression | 2 |
| Niclosamide | decreases expression, increases expression | 2 |
| Phenylmercuric Acetate | affects cotreatment, increases expression | 2 |
| Progesterone | affects cotreatment, decreases expression | 2 |
| Smoke | decreases expression, increases abundance | 2 |
| Tretinoin | increases expression | 2 |
| aristolochic acid I | increases expression | 1 |
| ammonium 2,3,3,3-tetrafluoro-2-(heptafluoropropoxy)-propanoate | decreases expression | 1 |
Cellosaurus cell lines
7 cell lines: 5 cancer cell line, 1 embryonic stem cell, 1 spontaneously immortalized cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B8A5 | Abcam Raji TWIST1 KO | Cancer cell line | Male |
| CVCL_B926 | Lis04_Twist1 | Embryonic stem cell | Female |
| CVCL_C0AZ | Abcam THP-1 TWIST1 KO | Cancer cell line | Male |
| CVCL_C7CM | Abcam PC-3 TWIST1 KO | Cancer cell line | Male |
| CVCL_DR99 | MCF-7/Twist | Cancer cell line | Female |
| CVCL_DS00 | MCF-10A/Twist | Spontaneously immortalized cell line | Female |
| CVCL_TV28 | HAP1 TWIST1 (-) | Cancer cell line | Male |
Clinical trials (associated diseases)
11 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT05474924 | PHASE4 | UNKNOWN | The Role of Budesonide Intrapolyp Injection in CRSwNP |
| NCT04676399 | EARLY_PHASE1 | ACTIVE_NOT_RECRUITING | Improving Pain Management Via Spinal Cord Stimulation and Blood Pressure Reduction |
| NCT03670147 | Not specified | TERMINATED | Paresthesia Free Spinal Cord Stimulation (PF-SCS) |
| NCT04463316 | Not specified | RECRUITING | GROWing Up With Rare GENEtic Syndromes |
| NCT04548375 | Not specified | RECRUITING | Multicenter Outcome Registry of AnaLgesic Effect of SCS(MORALES) Registry Protocol |
| NCT05466110 | Not specified | UNKNOWN | Spinal Cord Stimulation Versus Instrumentation for FBSS |
| NCT05540756 | Not specified | WITHDRAWN | Study on the Use of Intraoperative Neurophysiological Monitoring in Spinal Cord Stimulator Trials |
| NCT07535372 | Not specified | NOT_YET_RECRUITING | ASO Treatment for Syndromic Craniosynostoses |
| NCT02997020 | Not specified | ACTIVE_NOT_RECRUITING | Ivacaftor for Acquired CFTR Dysfunction in Chronic Rhinosinusitis (EDSPD Protocol) |
| NCT03379701 | Not specified | COMPLETED | Applications of Nanotechnology and Chemical Sensors for the Detection and Identification of Chronic Sinusitis Subtypes by Respiratory Samples |
| NCT04868695 | Not specified | RECRUITING | Subjective and Objective Outcome of ESS in CRSwNP |
Related Atlas pages
- Associated diseases: Saethre-Chotzen syndrome, TWIST1-related craniosynostosis, Sweeney-Cox syndrome, Robinow-Sorauf syndrome
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): androgenetic alopecia, coronary artery disorder, large artery stroke, Robinow-Sorauf syndrome, Saethre-Chotzen syndrome, Sweeney-Cox syndrome, TWIST1-related craniosynostosis