TWIST1

gene
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Also known as SCSH-twistBPES2bHLHa38CRS1

Summary

TWIST1 (twist family bHLH transcription factor 1, HGNC:12428) is a protein-coding gene on chromosome 7p21.1, encoding Twist-related protein 1 (Q15672). Acts as a transcriptional regulator. It is haploinsufficient (ClinGen: sufficient evidence).

This gene encodes a basic helix-loop-helix (bHLH) transcription factor that plays an important role in embryonic development. The encoded protein forms both homodimers and heterodimers that bind to DNA E box sequences and regulate the transcription of genes involved in cranial suture closure during skull development. This protein may also regulate neural tube closure, limb development and brown fat metabolism. This gene is hypermethylated and overexpressed in multiple human cancers, and the encoded protein promotes tumor cell invasion and metastasis, as well as metastatic recurrence. Mutations in this gene cause Saethre-Chotzen syndrome in human patients, which is characterized by craniosynostosis, ptosis and hypertelorism.

Source: NCBI Gene 7291 — RefSeq curated summary.

At a glance

  • Gene–disease (curated): Saethre-Chotzen syndrome (Definitive, ClinGen) — +6 more curated relationships
  • GWAS associations: 22
  • Clinical variants (ClinVar): 201 total — 49 pathogenic, 14 likely-pathogenic
  • Phenotypes (HPO): 147
  • Dosage sensitivity (ClinGen): haploinsufficiency sufficient evidence, triplosensitivity no evidence
  • Transcription factor: yes — 85 downstream targets (CollecTRI)
  • MANE Select transcript: NM_000474

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:12428
Approved symbolTWIST1
Nametwist family bHLH transcription factor 1
Location7p21.1
Locus typegene with protein product
StatusApproved
AliasesSCS, H-twist, BPES2, bHLHa38, CRS1
Ensembl geneENSG00000122691
Ensembl biotypeprotein_coding
OMIM601622
Entrez7291

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 2 nonsense_mediated_decay, 1 protein_coding

ENST00000242261, ENST00000354571, ENST00000443687

RefSeq mRNA: 1 — MANE Select: NM_000474 NM_000474

CCDS: CCDS5367

Canonical transcript exons

ENST00000242261 — 2 exons

ExonStartEnd
ENSE000008318891911667119117636
ENSE000014237031911546819116131

Expression profiles

Bgee: expression breadth ubiquitous, 233 present calls, max score 97.10.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 29.1233 / max 946.2288, expressed in 1241 samples.

FANTOM5 promoters (4 alternative TSS)

Promoter IDTPM avgSamples expressed
8294924.36581143
829484.4584995
829460.2473121
829470.051812

Top tissues by expression

275 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
periodontal ligamentUBERON:000826697.10gold quality
mucosa of paranasal sinusUBERON:000503096.62gold quality
oocyteCL:000002395.71gold quality
buccal mucosa cellCL:000233695.27gold quality
tendon of biceps brachiiUBERON:000818894.30gold quality
pericardiumUBERON:000240793.67gold quality
parietal pleuraUBERON:000240092.70gold quality
mammary ductUBERON:000176592.08gold quality
placentaUBERON:000198791.79gold quality
stromal cell of endometriumCL:000225591.70gold quality
subcutaneous adipose tissueUBERON:000219091.13gold quality
skin of hipUBERON:000155491.04gold quality
thoracic mammary glandUBERON:000520090.50gold quality
mammary glandUBERON:000191190.47gold quality
nippleUBERON:000203089.86gold quality
epithelium of mammary glandUBERON:000324489.80gold quality
upper arm skinUBERON:000426389.31gold quality
blood vessel layerUBERON:000479789.24gold quality
adipose tissueUBERON:000101388.87gold quality
secondary oocyteCL:000065588.74gold quality
connective tissueUBERON:000238488.62gold quality
olfactory segment of nasal mucosaUBERON:000538688.12gold quality
upper leg skinUBERON:000426287.36gold quality
cartilage tissueUBERON:000241887.20gold quality
zone of skinUBERON:000001486.66gold quality
descending thoracic aortaUBERON:000234586.27gold quality
skin of legUBERON:000151186.16gold quality
oral cavityUBERON:000016785.93gold quality
skin of abdomenUBERON:000141685.91gold quality
tendonUBERON:000004385.75gold quality

Single-cell (SCXA)

Detected in 4 experiment(s), a significant marker in 4.

ExperimentMarker?Max mean expression
E-HCAD-56yes844.57
E-MTAB-9388yes12.17
E-ANND-3yes10.82
E-MTAB-7249yes2.46

Regulation

Is transcription factor: yes

Downstream targets (CollecTRI)

85 targets.

TargetRegulation
ACANRepression
AKR1C2Activation
AKT2Activation
ALX3Unknown
ARUnknown
ATMActivation
BCL2Unknown
BGLAPUnknown
BMI1Activation
CAT
CCL2Activation
CCN5
CD24Unknown
CD44Activation
CDH1Repression
CDH11Activation
CDH17
CDH2Unknown
CDH5Unknown
CDKN1AUnknown
CDKN2ARepression
CLDN4Unknown
CLDN7Unknown
CLUUnknown
COL1A2Activation
COL2A1Repression
CTPS1Activation
CXCL12Activation
CXCL8Activation
DKK1Unknown

JASPAR motifs

MotifNameFamily
MA1123.1TWIST1Tal-related
MA1123.2TWIST1Tal-related
MA1123.3TWIST1Tal-related

JASPAR matrix evidence (PMIDs): PMID:25762439, PMID:29453333

Upstream regulators (CollecTRI, top): ATF3, CTNNB1, DLX4, ETV4, EZH2, FOXO1, FOXO3, FOXQ1, HDAC2, HIF1A, HMGA1, HMGA2, KLF17, NCOA1, NKX3-1, OVOL2, PER2, POU2F1, PPARD, PROX1, RELA, RUNX2, SNAI1, SOX2, SOX5, SOX9, SP1, STAT3, SUZ12, TP53

miRNA regulators (miRDB)

86 targeting TWIST1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-4476100.0068.182030
HSA-MIR-6876-5P100.0067.682126
HSA-MIR-3613-3P100.0076.367965
HSA-MIR-9-5P100.0072.282361
HSA-LET-7A-3P100.0074.033932
HSA-LET-7B-3P100.0074.083913
HSA-LET-7F-1-3P100.0074.023928
HSA-MIR-98-3P100.0074.083907
HSA-MIR-5692A100.0074.406850
HSA-MIR-6833-3P100.0070.633197
HSA-MIR-32-5P99.9875.211964
HSA-MIR-92A-3P99.9875.211960
HSA-MIR-92B-3P99.9875.251955
HSA-MIR-520D-5P99.9873.344883
HSA-MIR-524-5P99.9873.434882
HSA-MIR-25-3P99.9874.601817
HSA-MIR-363-3P99.9874.721821
HSA-MIR-367-3P99.9874.831819
HSA-MIR-426799.9666.532368
HSA-MIR-3912-5P99.9566.11925
HSA-MIR-6809-3P99.9171.453814
HSA-MIR-4753-3P99.9071.033786
HSA-MIR-95-5P99.8972.173973
HSA-MIR-137-3P99.8774.742401
HSA-MIR-576-5P99.8470.462582
HSA-MIR-130B-5P99.8368.501888
HSA-MIR-3121-3P99.8271.963630
HSA-MIR-489-3P99.8066.46839
HSA-MIR-451799.7669.191867
HSA-MIR-7856-5P99.7569.992901

Functional genomics

ClinGen dosage: haploinsufficiency 3 (sufficient evidence), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map

Literature-anchored findings (GeneRIF, showing 40)

  • Twist1 and Twist2 antagonize the ARF/p53 pathway. This is the first report suggesting a role for Twist genes as oncogenes (PMID:10485844)
  • new TWIST mutation (7p21) with variable eyelid manifestations supports locus homogeneity of BPES at 3q22 (PMID:11474656)
  • Deletion of 18 nucleotides or insertion of three, 15, or 21 nucleotides was not consistently associated with clinical disease and was conclude that they are at most weakly pathogenic. (PMID:11748846)
  • Identified direct paternal transmission of a novel missense TWIST mutation in the highly conserved Helix II domain of this bHLH-family gene. (PMID:11754069)
  • Deficience causes skull osteoblast apoptosis due to increased TNFalpha expression and caspase-2 activation. (PMID:11854168)
  • Cooperative E-box regulation of human GLI1 by this protein and USF (PMID:11948912)
  • Characterization of a dominant negative C. elegans Twist mutant protein with implications for human Saethre-Chotzen syndrome (PMID:12015302)
  • inactivation reduces CBFA1/RUNX2 expression and DNA binding to the osteocalcin promoter in osteoblasts (PMID:12270142)
  • One variant is associated with Robinow-Sorauf syndrome. (PMID:12791045)
  • The risk for developmental delay in patients with deletions involving the TWIST gene is approximately 90%. (PMID:14513358)
  • novel role for TWIST, a basic helix-loop-helix protein, which plays a central role in cell type determination and differentiation, during generation of acquired resistance to taxol in a nasopharyngeal carcinoma cell line, HNE1-T3 (PMID:14724576)
  • TWIST1 plays an essential role in tumor metastasis. (PMID:15210113)
  • Twist was highly and selectively expressed in T cells of patients with Sezary Syndrome. (PMID:15313894)
  • loss of HOXA5 expression could lead to the functional activation of Twist resulting in aberrant cell cycle regulation and promoting breast carcinogenesis (PMID:15545268)
  • A reporter assay with the p21 promoter demonstrated that Snail inhibited expression of p21 induced by E2A. Co-expression of Snail with Twist showed additive inhibitory effects. (PMID:15555546)
  • H-Twist overexpression in neuroblastomas is responsible for the inhibition of the ARF/p53 pathway involved in the Myc-dependent apoptotic response. (PMID:15607966)
  • Misregulation of Twist1 dimerization by post-translational mechanisms underlies phenotypes of individuals with Saethre-Chotzen syndrome (PMID:15735646)
  • This analysis further dissects the structure-function relationships of TWIST and corroborates with phenotypic observations of disease expressivity. (PMID:15880747)
  • TWIST gene is involved in high-grade pediatric osteosarcomas and is a new marker with a possible initial predictive value. (PMID:15900593)
  • Results have identified TWIST as a critical regulator of prostate cancer cell growth and suggest a potential therapeutic approach to inhibit the growth and metastasis of androgen-independent prostate cancer through inactivation of the TWIST gene. (PMID:15958559)
  • Overexpression of TWIST protein in a human glioma cell line significantly enhanced tumor cell invasion, a hallmark of high-grade gliomas. (PMID:16229805)
  • Twist1 is induced by canonical Wnt signaling and expression of Twist1 strongly inhibited chondrocyte gene expression. (PMID:16293629)
  • Twist over-expression induces angiogenesis in a mouse breast cancer model (PMID:16322226)
  • Twist may play an important role in the invasion and metastasis of nasopharyngeal carcinoma (PMID:16412561)
  • Dimer partner selection is an important mediator of Twist1 function in transgenic mice, providing a mechanistic understanding of craniosynostosis due to TWIST haploinsufficiency. (PMID:16502419)
  • This provides genetic evidence that Twist1, Msx2 and Efna4 function together in boundary formation and the pathogenesis of coronal synostosis. (PMID:16540516)
  • Twist overexpression plays a role in destabilizing the genome, thus promoting chromosomal instability. (PMID:16737925)
  • These results implicate Twist proteins in regulation of TNFalpha production by antiinflammatory factors and pathways, and provide a mechanism by which type I IFNs and Axl receptors suppress inflammatory cytokine production. (PMID:16831897)
  • Twist may act as a negative regulator of osteoblastic differentiation in periodontal ligament cells (PMID:16888803)
  • Twist haploinsufficiency results in decreased Cbl-mediated PI3K degradation in osteoblasts. (PMID:17003487)
  • Patients with TWIST gene mutations may have more ophthalmic abnormalities, including more strabismus, ptosis, NLDO, astigmatism, vertical deviations, and amblyopia compared with patients with FGFR3 gene mutations. (PMID:17070479)
  • suggest critical implication of the CCT repeats in association with Sp1 and Sp3 factors in sustaining expression of the TWIST1 gene in mesenchymal cells (PMID:17157810)
  • Twist, a novel oncogene, is upregulated in pancreatic cancer (PMID:17236203)
  • Induction of Twist by a human viral oncoprotein LMP1 directly contributes to the metastatic nature of nasopharyngeal carcinoma. (PMID:17332324)
  • Twist is a positive transcriptional regulator of AKT2 expression;Twist-AKT2 signaling is involved in promoting invasive ability and survival of breast cancer cells. (PMID:17332325)
  • Some TWIST1 mutations in the RUNX2 binding site are associated with craniosynostosis. (PMID:17343269)
  • TWIST may serve as a prognostic marker for high-grade prostatic cancer in humans; up-regulation of TWIST with aberrant expression of E-cadherin may predict development of metastatic disease. (PMID:17394502)
  • Data suggest that Twist-1 and -2 play an important role in NF-kappaB-dependent chemoresistance. (PMID:17403902)
  • no evidence that mosaicism for mutations, normally associated with syndromal forms of craniosynostosis, occur in single suture craniosynostosis (PMID:17414280)
  • findings suggest that reduced expression of TWIST suppresses the multistep process of peritoneal dissemination (detachment from the primary lesion, adhesion to MCs and invasion of MCs. (PMID:17487558)

Cross-species orthologs

9 orthologs

OrganismSymbolGene ID
mus_musculusTwist1ENSMUSG00000035799
rattus_norvegicusTwist1ENSRNOG00000011101
drosophila_melanogastertwiFBGN0003900
drosophila_melanogasterHLH54FFBGN0022740
drosophila_melanogasterHandFBGN0032209
drosophila_melanogasterFer3FBGN0037937
drosophila_melanogasterCG33557FBGN0053557
caenorhabditis_elegansWBGENE00001953
caenorhabditis_elegansWBGENE00001956

Paralogs (13): HAND1 (ENSG00000113196), TCF21 (ENSG00000118526), TCF15 (ENSG00000125878), FERD3L (ENSG00000146618), TCF23 (ENSG00000163792), HAND2 (ENSG00000164107), PTF1A (ENSG00000168267), MSC (ENSG00000178860), FIGLA (ENSG00000183733), BHLHA9 (ENSG00000205899), TWIST2 (ENSG00000233608), SCX (ENSG00000260428), TCF24 (ENSG00000261787)

Protein

Protein identifiers

Twist-related protein 1Q15672 (reviewed: Q15672)

Alternative names: Class A basic helix-loop-helix protein 38, H-twist

All UniProt accessions (3): Q15672, H7BY00, H7C4D7

UniProt curated annotations — full annotation on UniProt →

Function. Acts as a transcriptional regulator. Inhibits myogenesis by sequestrating E proteins, inhibiting trans-activation by MEF2, and inhibiting DNA-binding by MYOD1 through physical interaction. This interaction probably involves the basic domains of both proteins. Also represses expression of pro-inflammatory cytokines such as TNFA and IL1B. Regulates cranial suture patterning and fusion. Activates transcription as a heterodimer with E proteins. Regulates gene expression differentially, depending on dimer composition. Homodimers induce expression of FGFR2 and POSTN while heterodimers repress FGFR2 and POSTN expression and induce THBS1 expression. Heterodimerization is also required for osteoblast differentiation. Represses the activity of the circadian transcriptional activator: NPAS2-BMAL1 heterodimer.

Subunit / interactions. Efficient DNA binding requires dimerization with another bHLH protein. Homodimer or heterodimer with E proteins such as TCF3. ID1 binds preferentially to TCF3 but does not interact efficiently with TWIST1 so ID1 levels control the amount of TCF3 available to dimerize with TWIST1 and thus determine the type of dimer formed.

Subcellular location. Nucleus.

Tissue specificity. Subset of mesodermal cells.

Disease relevance. Saethre-Chotzen syndrome (SCS) [MIM:101400] A craniosynostosis syndrome characterized by coronal synostosis, brachycephaly, low frontal hairline, facial asymmetry, hypertelorism, broad halluces, and clinodactyly. The disease is caused by variants affecting the gene represented in this entry. Robinow-Sorauf syndrome (RSS) [MIM:180750] An autosomal dominant syndrome characterized by craniosynostosis, asymmetry of orbits, flat face, hypertelorism, a thin, long, and pointed nose, shallow orbits, strabismus, and broad great toes with a duplication of the distal phalanx. RSS is clinically similar to Saethre-Chotzen syndrome, with the most characteristic additional feature in Robinow-Sorauf syndrome being a bifid or partially duplicated hallux. The disease is caused by variants affecting the gene represented in this entry. Craniosynostosis 1 (CRS1) [MIM:123100] A primary abnormality of skull growth involving premature fusion of one or more cranial sutures. The growth velocity of the skull often cannot match that of the developing brain resulting in an abnormal head shape and, in some cases, increased intracranial pressure, which must be treated promptly to avoid permanent neurodevelopmental disability. The disease is caused by variants affecting the gene represented in this entry. Sweeney-Cox syndrome (SWCOS) [MIM:617746] An autosomal dominant syndrome characterized by facial dysostosis, including hypertelorism, deficiencies of the eyelids and facial bones, cleft palate/velopharyngeal insufficiency, and low-set cupped ears. The disease is caused by variants affecting the gene represented in this entry.

RefSeq proteins (1): NP_000465* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR011598bHLH_domDomain
IPR036638HLH_DNA-bd_sfHomologous_superfamily
IPR047093TWIST1_bHLHDomain
IPR050283E-box_TF_RegulatorsFamily

Pfam: PF00010

UniProt features (28 total): sequence variant 11, sequence conflict 7, compositionally biased region 4, region of interest 2, helix 2, chain 1, domain 1

Structure

Experimental structures (PDB)

2 structures.

PDBMethodResolution (Å)
8OSBX-RAY DIFFRACTION2.9
2MJVSOLUTION NMR

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-Q15672-F168.890.23

Function

Pathways and Gene Ontology

Reactome pathways

5 pathways

IDPathway
R-HSA-6785807Interleukin-4 and Interleukin-13 signaling
R-HSA-8878166Transcriptional regulation by RUNX2
R-HSA-8939902Regulation of RUNX2 expression and activity
R-HSA-9725371Nuclear events stimulated by ALK signaling in cancer
R-HSA-9764725Negative Regulation of CDH1 Gene Transcription

MSigDB gene sets: 797 (showing top): GSE18804_SPLEEN_MACROPHAGE_VS_TUMORAL_MACROPHAGE_UP, GOBP_MORPHOGENESIS_OF_AN_EPITHELIUM, GOBP_REGULATION_OF_DOUBLE_STRAND_BREAK_REPAIR, GOBP_LIPID_MODIFICATION, GOBP_FATTY_ACID_CATABOLIC_PROCESS, GOBP_EMBRYO_DEVELOPMENT_ENDING_IN_BIRTH_OR_EGG_HATCHING, GOBP_EPITHELIUM_DEVELOPMENT, GOBP_CELL_MIGRATION_INVOLVED_IN_HEART_DEVELOPMENT, GOBP_REGULATION_OF_SKELETAL_MUSCLE_TISSUE_DEVELOPMENT, GOBP_MUSCLE_TISSUE_DEVELOPMENT, BENPORATH_ES_WITH_H3K27ME3, HNF3ALPHA_Q6, GOBP_SKELETAL_SYSTEM_DEVELOPMENT, REACTOME_CYTOKINE_SIGNALING_IN_IMMUNE_SYSTEM, GOBP_POSITIVE_REGULATION_OF_EPITHELIAL_TO_MESENCHYMAL_TRANSITION

GO Biological Process (58): negative regulation of transcription by RNA polymerase II (GO:0000122), ossification (GO:0001503), osteoblast differentiation (GO:0001649), in utero embryonic development (GO:0001701), neuron migration (GO:0001764), neural tube closure (GO:0001843), aortic valve morphogenesis (GO:0003180), mitral valve morphogenesis (GO:0003183), endocardial cushion morphogenesis (GO:0003203), cardiac neural crest cell migration involved in outflow tract morphogenesis (GO:0003253), regulation of transcription by RNA polymerase II (GO:0006357), muscle organ development (GO:0007517), positive regulation of gene expression (GO:0010628), positive regulation of epithelial to mesenchymal transition (GO:0010718), negative regulation of macrophage cytokine production (GO:0010936), positive regulation of cell migration (GO:0030335), regulation of bone mineralization (GO:0030500), positive regulation of fatty acid beta-oxidation (GO:0032000), developmental process (GO:0032502), negative regulation of tumor necrosis factor production (GO:0032720), positive regulation of interleukin-6 production (GO:0032755), positive regulation of tumor necrosis factor production (GO:0032760), embryonic forelimb morphogenesis (GO:0035115), embryonic hindlimb morphogenesis (GO:0035116), negative regulation of peroxisome proliferator activated receptor signaling pathway (GO:0035359), outer ear morphogenesis (GO:0042473), embryonic digit morphogenesis (GO:0042733), negative regulation of apoptotic process (GO:0043066), negative regulation of DNA damage response, signal transduction by p53 class mediator (GO:0043518), negative regulation of osteoblast differentiation (GO:0045668), positive regulation of angiogenesis (GO:0045766), negative regulation of DNA-templated transcription (GO:0045892), positive regulation of transcription by RNA polymerase II (GO:0045944), rhythmic process (GO:0048511), negative regulation of skeletal muscle tissue development (GO:0048642), embryonic cranial skeleton morphogenesis (GO:0048701), negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (GO:0051898), cranial suture morphogenesis (GO:0060363), embryonic camera-type eye formation (GO:0060900), eyelid development in camera-type eye (GO:0061029)

GO Molecular Function (17): RNA polymerase II transcription regulatory region sequence-specific DNA binding (GO:0000977), DNA-binding transcription factor activity, RNA polymerase II-specific (GO:0000981), cis-regulatory region sequence-specific DNA binding (GO:0000987), DNA-binding transcription repressor activity (GO:0001217), transcription coregulator binding (GO:0001221), DNA-binding transcription activator activity, RNA polymerase II-specific (GO:0001228), protein domain specific binding (GO:0019904), protein homodimerization activity (GO:0042803), histone deacetylase binding (GO:0042826), bHLH transcription factor binding (GO:0043425), E-box binding (GO:0070888), DNA-binding transcription factor binding (GO:0140297), DNA binding (GO:0003677), DNA-binding transcription factor activity (GO:0003700), protein binding (GO:0005515), identical protein binding (GO:0042802), protein dimerization activity (GO:0046983)

GO Cellular Component (3): chromatin (GO:0000785), nucleus (GO:0005634), nucleoplasm (GO:0005654)

Reactome top-level categories

Rollup of top-5 pathways:

CategoryPathways
Signaling by Interleukins1
Generic Transcription Pathway1
Transcriptional regulation by RUNX21
Signaling by ALK fusions and activated point mutants1
Regulation of CDH1 Gene Transcription1

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
transcription cis-regulatory region binding4
protein binding3
regulation of transcription by RNA polymerase II2
transcription by RNA polymerase II2
negative regulation of DNA-templated transcription2
cell migration2
regulation of DNA-templated transcription2
RNA polymerase II transcription regulatory region sequence-specific DNA binding2
DNA-binding transcription factor activity2
transcription factor binding2
cellular anatomical structure2
multicellular organismal process1
ossification1
cell differentiation1
chordate embryonic development1
generation of neurons1
primary neural tube formation1
tube closure1
aortic valve development1
heart valve morphogenesis1
mitral valve development1
atrioventricular valve morphogenesis1
heart morphogenesis1
endocardial cushion development1
mesenchyme morphogenesis1
neural crest cell migration1
outflow tract morphogenesis1
cell migration involved in heart development1
cardiac neural crest cell development involved in outflow tract morphogenesis1
animal organ development1
muscle structure development1
gene expression1
regulation of gene expression1
positive regulation of macromolecule biosynthetic process1
epithelial to mesenchymal transition1
regulation of epithelial to mesenchymal transition1
positive regulation of cell differentiation1
positive regulation of multicellular organismal process1
negative regulation of cytokine production involved in immune response1
macrophage cytokine production1

Protein interactions and networks

STRING

3276 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
TWIST1G3BP2Q9UN86946
TWIST1SNAI2O43623936
TWIST1TP53P04637914
TWIST1RUNX2Q13950905
TWIST1MSX2P35548898
TWIST1SNAI1O95863894
TWIST1ZEB1P37275890
TWIST1BMI1P35226886
TWIST1R4GMX3R4GMX3884
TWIST1FGFR3P22607881
TWIST1FGFR2P18443878
TWIST1CDH1P12830849
TWIST1FGFR1P11362847
TWIST1EP300Q09472846
TWIST1SMAD4Q13485845

IntAct

86 interactions, top by confidence:

ABTypeScore
TWIST1TCF4psi-mi:“MI:0915”(physical association)0.850
TWIST1TCF4psi-mi:“MI:0403”(colocalization)0.850
TWIST1TP53psi-mi:“MI:0915”(physical association)0.820
TP53TWIST1psi-mi:“MI:0407”(direct interaction)0.820
TWIST1TP53psi-mi:“MI:0914”(association)0.820
TP53TWIST1psi-mi:“MI:0915”(physical association)0.820
TWIST1TP53psi-mi:“MI:0407”(direct interaction)0.820
H4C16BRD4psi-mi:“MI:0915”(physical association)0.740
BRD4H4C16psi-mi:“MI:0914”(association)0.740
H4C16BRD4psi-mi:“MI:0914”(association)0.740
TCF3TWIST1psi-mi:“MI:0915”(physical association)0.710
TWIST1TCF3psi-mi:“MI:0915”(physical association)0.710
TWIST1TCF3psi-mi:“MI:0403”(colocalization)0.710
CETN1SFI1psi-mi:“MI:0914”(association)0.640
KMT5ATWIST1psi-mi:“MI:0915”(physical association)0.630
KMT5ATWIST1psi-mi:“MI:0407”(direct interaction)0.630

BioGRID (145): BCL6 (Reconstituted Complex), TP53 (Reconstituted Complex), TCF4 (Reconstituted Complex), YY1 (Reconstituted Complex), NEIL3 (Reconstituted Complex), YY2 (Reconstituted Complex), ZIC3 (Reconstituted Complex), TWIST1 (Synthetic Lethality), TWIST1 (Two-hybrid), TWIST1 (Affinity Capture-MS), TWIST1 (Affinity Capture-MS), BTRC (Affinity Capture-Western), TWIST1 (Affinity Capture-Western), PAQR3 (Affinity Capture-Western), TWIST1 (Affinity Capture-Western)

ESM2 similar proteins: O35437, O43680, O60682, O88940, O93507, O96004, P22091, P24899, P27792, P48985, P57100, P59101, P70447, P70562, P70595, P70660, P70661, P79782, P97832, Q02346, Q02575, Q02576, Q02577, Q12870, Q15672, Q5E9S3, Q60539, Q60756, Q64124, Q64221, Q64279, Q7JGP2, Q7RTU7, Q8BGW3, Q8MI03, Q8MI06, Q8MIB5, Q8MIB9, Q8MID5, Q8MIE7

Diamond homologs: A8E5T6, B6VQA1, O13125, O13126, O16867, O35437, O42202, O42606, O43680, O57598, O60682, O73615, O73823, O88940, O93507, O96004, O96642, P13903, P17542, P22091, P24899, P26687, P46581, P48985, P48987, P57100, P57101, P57102, P59101, P61295, P61296, P70661, P79765, P79782, P97831, P97832, Q02575, Q02576, Q02577, Q0VCE2

SIGNOR signaling

60 interactions.

AEffectBMechanism
AKT1up-regulatesTWIST1phosphorylation
MAPK1up-regulatesTWIST1phosphorylation
MAPK11up-regulatesTWIST1phosphorylation
MAPK14up-regulatesTWIST1phosphorylation
MAPK3up-regulatesTWIST1phosphorylation
MAPK8up-regulatesTWIST1phosphorylation
CSNK2A1up-regulatesTWIST1phosphorylation
TWIST1down-regulatesCSNK2A1
AKTup-regulatesTWIST1phosphorylation
CTDSP1“down-regulates activity”TWIST1dephosphorylation
EZH2“down-regulates quantity by repression”TWIST1“transcriptional regulation”
POU2F1“up-regulates quantity by expression”TWIST1“transcriptional regulation”
PER2“down-regulates quantity by repression”TWIST1“transcriptional regulation”
HDAC2“down-regulates quantity by repression”TWIST1“transcriptional regulation”
SUZ12“down-regulates quantity by repression”TWIST1“transcriptional regulation”
RUNX2“up-regulates quantity by expression”TWIST1“transcriptional regulation”
TWIST1“down-regulates quantity by repression”CDH1“transcriptional regulation”
TWIST1“up-regulates quantity by expression”AKR1C2“transcriptional regulation”
TWIST1“up-regulates quantity by expression”ATM“transcriptional regulation”
TWIST1“up-regulates quantity by expression”CD44“transcriptional regulation”
TWIST1“up-regulates quantity by expression”ICAM1“transcriptional regulation”
TWIST1“up-regulates quantity by expression”ITGB1“transcriptional regulation”
TWIST1“up-regulates quantity by expression”CTPS1“transcriptional regulation”
TWIST1“down-regulates quantity by repression”F2R“transcriptional regulation”
TWIST1“up-regulates quantity by expression”FN1“transcriptional regulation”
TWIST1“up-regulates quantity by expression”HGF“transcriptional regulation”
TWIST1“up-regulates quantity by expression”FAP“transcriptional regulation”
TWIST1“up-regulates quantity by expression”SNAI2“transcriptional regulation”
TWIST1“up-regulates quantity by expression”MMP2“transcriptional regulation”

Enriched among interaction partners

Reactome pathways and GO biological processes over-represented among this gene’s 33 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.

Reactome pathways:

PathwayPartnersFoldFDR
Regulation of PD-L1(CD274) transcription622.5×9e-05
Formation of the beta-catenin:TCF transactivating complex520.7×8e-04
Estrogen-dependent gene expression513.0×2e-03

GO biological processes:

GO termPartnersFoldFDR
chromatin organization618.6×7e-05
chromatin remodeling613.7×3e-04
DNA damage response711.7×1e-04
regulation of cell cycle511.7×3e-03
positive regulation of apoptotic process58.9×7e-03
positive regulation of gene expression78.5×9e-04

Disease & clinical

Clinical variants and AI predictions

ClinVar

201 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic49
Likely pathogenic14
Uncertain significance90
Likely benign19
Benign1

Top pathogenic / likely-pathogenic (30)

Variant IDHGVSClassification
1075081NM_000474.4(TWIST1):c.54_73del (p.Ser18fs)Pathogenic
1338420NM_000474.4(TWIST1):c.108del (p.Arg37fs)Pathogenic
1351855NM_000474.4(TWIST1):c.400ATC[1] (p.Ile135del)Pathogenic
1357752NC_000007.13:g.(?19156336)(19157207_?)delPathogenic
1418275NM_000474.4(TWIST1):c.349G>T (p.Glu117Ter)Pathogenic
1434196NM_000474.4(TWIST1):c.258_261dup (p.Gly88fs)Pathogenic
1451820NM_000474.4(TWIST1):c.338_339dup (p.Asn114fs)Pathogenic
1457074NM_000474.4(TWIST1):c.395_415dup (p.Arg132_Leu138dup)Pathogenic
1458491NM_000474.4(TWIST1):c.310G>T (p.Glu104Ter)Pathogenic
1703561GRCh37/hg19 7p21.1(chr7:19152100-19157785)Pathogenic
1722762NM_000474.4(TWIST1):c.-18C>TPathogenic
2036363NM_000474.4(TWIST1):c.141_145del (p.Gly48fs)Pathogenic
2093953NM_000474.4(TWIST1):c.347G>C (p.Arg116Pro)Pathogenic
2444186NM_000474.4(TWIST1):c.319C>T (p.Gln107Ter)Pathogenic
2572412NM_000474.4(TWIST1):c.351G>T (p.Glu117Asp)Pathogenic
2572990NM_000474.4(TWIST1):c.408del (p.Thr137fs)Pathogenic
2920608NM_000474.4(TWIST1):c.325C>T (p.Gln109Ter)Pathogenic
2921667NM_000474.4(TWIST1):c.211del (p.Gln71fs)Pathogenic
2941524NM_000474.4(TWIST1):c.290_294del (p.Gly97fs)Pathogenic
2947590NM_000474.4(TWIST1):c.79dup (p.Gln27fs)Pathogenic
3376165NM_000474.4(TWIST1):c.346C>T (p.Arg116Trp)Pathogenic
3757740NM_000474.4(TWIST1):c.102del (p.Gly36fs)Pathogenic
3758878NM_000474.4(TWIST1):c.156_165dup (p.Ala56fs)Pathogenic
3759623NM_000474.4(TWIST1):c.124del (p.Ser42fs)Pathogenic
4083363NM_000474.4(TWIST1):c.7C>T (p.Gln3Ter)Pathogenic
444875NM_000474.4(TWIST1):c.350A>T (p.Glu117Val)Pathogenic
444876NM_000474.4(TWIST1):c.350A>G (p.Glu117Gly)Pathogenic
458686NM_000474.4(TWIST1):c.397_417dup (p.Lys133_Pro139dup)Pathogenic
4783656NM_000474.4(TWIST1):c.364C>T (p.Gln122Ter)Pathogenic
489149NM_000474.4(TWIST1):c.419C>A (p.Ser140Ter)Pathogenic

SpliceAI

136 predictions. Top by Δscore:

VariantEffectΔscore
7:19116665:CCTTA:Cdonor_loss0.9400
7:19116666:CTTAC:Cdonor_loss0.9400
7:19116667:TTACC:Tdonor_loss0.9400
7:19116668:TAC:Tdonor_loss0.9400
7:19116669:A:ATdonor_loss0.9400
7:19116670:C:Gdonor_loss0.9400
7:19115828:A:Cacceptor_gain0.9200
7:19116129:CAT:Cacceptor_gain0.9100
7:19116770:G:Cdonor_gain0.8900
7:19116143:C:Tacceptor_gain0.8700
7:19115824:A:Cacceptor_gain0.8500
7:19116132:C:CCacceptor_gain0.8400
7:19116130:ATC:Aacceptor_loss0.8200
7:19116131:TCTGC:Tacceptor_loss0.8200
7:19116132:CTG:Cacceptor_loss0.8200
7:19116133:T:Aacceptor_loss0.8200
7:19115827:CA:Cacceptor_gain0.8100
7:19116134:G:Cacceptor_loss0.8100
7:19116794:G:Cdonor_gain0.7800
7:19116748:T:TAdonor_gain0.7700
7:19116804:G:Adonor_gain0.7700
7:19116669:A:ACdonor_gain0.7500
7:19116670:C:CCdonor_gain0.7500
7:19116127:GACAT:Gacceptor_gain0.6800
7:19115828:A:ACacceptor_gain0.6300
7:19116663:GTCCT:Gdonor_loss0.6300
7:19116664:TCCTT:Tdonor_loss0.6300
7:19116136:A:Tacceptor_loss0.6200
7:19116671:C:Gdonor_loss0.6200
7:19116143:C:CTacceptor_gain0.6100

AlphaMissense

1313 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
7:19116742:C:GG194R1.000
7:19116742:C:TG194R1.000
7:19116746:C:AM192I1.000
7:19116746:C:GM192I1.000
7:19116746:C:TM192I1.000
7:19116747:A:GM192T1.000
7:19116749:C:AR191S1.000
7:19116749:C:GR191S1.000
7:19116750:C:AR191M1.000
7:19116750:C:GR191T1.000
7:19116751:T:AR191W1.000
7:19116752:C:AW190C1.000
7:19116752:C:GW190C1.000
7:19116754:A:GW190R1.000
7:19116754:A:TW190R1.000
7:19116760:A:GS188P1.000
7:19116761:G:CF187L1.000
7:19116761:G:TF187L1.000
7:19116762:A:CF187C1.000
7:19116762:A:GF187S1.000
7:19116763:A:CF187V1.000
7:19116763:A:GF187L1.000
7:19116763:A:TF187I1.000
7:19116765:G:TA186D1.000
7:19116766:C:GA186P1.000
7:19116774:A:GL183P1.000
7:19116774:A:TL183H1.000
7:19116834:A:GL163P1.000
7:19116834:A:TL163H1.000
7:19116846:A:GL159P1.000

dbSNP variants (sampled 300 via entrez): RS1000849825 (7:19118642 C>T), RS1000882345 (7:19118432 G>A), RS1000888985 (7:19116283 G>A), RS1001785482 (7:19118189 G>A), RS1002148856 (7:19114833 TA>T,TAA), RS1002706240 (7:19117468 T>A,G), RS1004859652 (7:19113418 T>C), RS1004991564 (7:19118935 A>G), RS1005131044 (7:19119128 C>G), RS1005403792 (7:19113797 G>A,T), RS1005656103 (7:19116381 A>G), RS1005709966 (7:19118536 C>A,T), RS1005793813 (7:19116522 G>A,T), RS1005991737 (7:19117886 C>A,G,T), RS1006029158 (7:19115559 G>C)

Disease associations

OMIM: gene MIM:601622 | disease phenotypes: MIM:101400, MIM:123100, MIM:180750, MIM:617746

GenCC curated gene-disease

DiseaseClassificationInheritance
Saethre-Chotzen syndromeDefinitiveAutosomal dominant
TWIST1-related craniosynostosisStrongAutosomal dominant
Sweeney-Cox syndromeStrongAutosomal dominant
Robinow-Sorauf syndromeStrongAutosomal dominant
isolated scaphocephalySupportiveAutosomal dominant
isolated plagiocephalySupportiveAutosomal dominant
isolated brachycephalySupportiveAutosomal dominant

ClinGen Gene-Disease Validity (3)

Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.

DiseaseClassificationInheritance
Sweeney-Cox syndromeLimitedAD
Saethre-Chotzen syndromeDefinitiveAD
TWIST1-related craniosynostosisModerateAD

Mondo (7): Saethre-Chotzen syndrome (MONDO:0007042), TWIST1-related craniosynostosis (MONDO:0007399), Robinow-Sorauf syndrome (MONDO:0008391), Sweeney-Cox syndrome (MONDO:0060592), (MONDO:0018112), (MONDO:0018113), (MONDO:0018114)

Orphanet (3): OBSOLETE: Isolated oxycephaly (Orphanet:63440), Saethre-Chotzen syndrome (Orphanet:794), Robinow-Sorauf syndrome (Orphanet:3106)

HPO phenotypes

147 total (30 of 147 shown, HPO-id order):

HPOTerm
HP:0000006Autosomal dominant inheritance
HP:0000028Cryptorchidism
HP:0000160Narrow mouth
HP:0000175Cleft palate
HP:0000189Narrow palate
HP:0000193Bifid uvula
HP:0000218High palate
HP:0000220Velopharyngeal insufficiency
HP:0000248Brachycephaly
HP:0000260Wide anterior fontanel
HP:0000262Turricephaly
HP:0000263Oxycephaly
HP:0000268Dolichocephaly
HP:0000269Prominent occiput
HP:0000270Delayed cranial suture closure
HP:0000272Malar flattening
HP:0000286Epicanthus
HP:0000294Low anterior hairline
HP:0000316Hypertelorism
HP:0000322Short philtrum
HP:0000324Facial asymmetry
HP:0000327Hypoplasia of the maxilla
HP:0000337Broad forehead
HP:0000347Micrognathia
HP:0000348High forehead
HP:0000349Widow’s peak
HP:0000365Hearing impairment
HP:0000369Low-set ears
HP:0000377Abnormal pinna morphology
HP:0000378Cupped ear

GWAS associations

22 associations (top):

StudyTraitp-value
GCST001762_934Obesity-related traits4.000000e-07
GCST002875_21Diisocyanate-induced asthma1.000000e-06
GCST003542_192Night sleep phenotypes3.000000e-06
GCST004125_22Type 2 diabetes (age of onset)2.000000e-06
GCST005116_33Male-pattern baldness7.000000e-63
GCST006009_16Pulse pressure5.000000e-13
GCST007096_94Pulse pressure1.000000e-37
GCST007097_130Pulse pressure1.000000e-11
GCST007097_131Pulse pressure3.000000e-15
GCST007099_80Systolic blood pressure9.000000e-14
GCST007267_317Systolic blood pressure3.000000e-21
GCST007268_31Diastolic blood pressure3.000000e-11
GCST007269_208Pulse pressure5.000000e-54
GCST007703_113Systolic blood pressure6.000000e-07
GCST007705_34Pulse pressure6.000000e-14
GCST010158_1Large artery stroke (CCS or TOAST classification)4.000000e-16
GCST010159_1Large artery stroke (CCS and TOAST classification)3.000000e-10
GCST010160_1Large artery stroke (TOAST classification)8.000000e-14
GCST010161_1Large artery stroke (CCSp classification)j1.000000e-12
GCST010479_4Coronary artery disease1.000000e-14
GCST010866_122Coronary artery disease1.000000e-31
GCST010867_67Coronary artery disease8.000000e-09

EFO canonical traits (5, from GWAS)

EFO IDTrait name
EFO:0005116urinary metabolite measurement
EFO:0006995response to diisocyanate
EFO:0005763pulse pressure measurement
EFO:0006335systolic blood pressure
EFO:0006336diastolic blood pressure

MeSH disease descriptors (1)

DescriptorNameTree numbers
C537183Robinow Sorauf syndrome (supp.)

Drugs & pharmacology

Drug and pharmacology data

Is drug target: no

PharmGKB: 1 entry (VIP=true, CPIC=false)

CTD chemical–gene interactions

102 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
sodium arseniteaffects binding, decreases reaction, increases abundance, decreases expression, affects cotreatment (+3 more)8
Arsenicdecreases expression, affects expression, decreases response to substance, increases abundance, increases expression (+3 more)6
Valproic Acidaffects cotreatment, increases expression6
Particulate Matteraffects cotreatment, affects reaction, increases expression, decreases reaction, decreases expression (+1 more)6
Air Pollutantsincreases abundance, increases expression, decreases expression, decreases reaction4
trichostatin Aaffects cotreatment, increases expression3
Estradioldecreases expression, affects cotreatment3
Aflatoxin B1affects expression, decreases expression, decreases methylation3
osimertinibincreases cleavage, decreases response to substance, decreases cleavage, affects response to substance, decreases reaction2
thymoquinonedecreases expression, decreases reaction, increases reaction2
methylmercuric chloridedecreases expression, increases expression2
bisphenol Adecreases expression, increases methylation2
mercuric bromideincreases expression, affects cotreatment2
cordycepindecreases expression, decreases localization, affects cotreatment, increases reaction2
2-(4-morpholinyl)-8-phenyl-4H-1-benzopyran-4-onedecreases reaction, increases abundance, increases expression, increases reaction, decreases expression2
SB 203580decreases reaction, increases abundance, increases expression, decreases expression2
U 0126decreases reaction, increases expression, increases abundance, increases reaction2
statticdecreases reaction, increases abundance, increases expression, increases reaction2
Panobinostataffects cotreatment, increases expression2
Benzo(a)pyreneincreases expression, affects methylation2
Cisplatinincreases expression, decreases reaction, decreases expression2
Doxorubicindecreases expression, increases expression, affects cotreatment2
Glucosedecreases expression, increases expression2
Niclosamidedecreases expression, increases expression2
Phenylmercuric Acetateaffects cotreatment, increases expression2
Progesteroneaffects cotreatment, decreases expression2
Smokedecreases expression, increases abundance2
Tretinoinincreases expression2
aristolochic acid Iincreases expression1
ammonium 2,3,3,3-tetrafluoro-2-(heptafluoropropoxy)-propanoatedecreases expression1

Cellosaurus cell lines

7 cell lines: 5 cancer cell line, 1 embryonic stem cell, 1 spontaneously immortalized cell line

First 10 cell lines (id-ordered, not curated):

CellosaurusNameCategorySex
CVCL_B8A5Abcam Raji TWIST1 KOCancer cell lineMale
CVCL_B926Lis04_Twist1Embryonic stem cellFemale
CVCL_C0AZAbcam THP-1 TWIST1 KOCancer cell lineMale
CVCL_C7CMAbcam PC-3 TWIST1 KOCancer cell lineMale
CVCL_DR99MCF-7/TwistCancer cell lineFemale
CVCL_DS00MCF-10A/TwistSpontaneously immortalized cell lineFemale
CVCL_TV28HAP1 TWIST1 (-)Cancer cell lineMale

Clinical trials (associated diseases)

11 trials via MONDO — disease-level, not drug-specific.

TrialPhaseStatusTitle
NCT05474924PHASE4UNKNOWNThe Role of Budesonide Intrapolyp Injection in CRSwNP
NCT04676399EARLY_PHASE1ACTIVE_NOT_RECRUITINGImproving Pain Management Via Spinal Cord Stimulation and Blood Pressure Reduction
NCT03670147Not specifiedTERMINATEDParesthesia Free Spinal Cord Stimulation (PF-SCS)
NCT04463316Not specifiedRECRUITINGGROWing Up With Rare GENEtic Syndromes
NCT04548375Not specifiedRECRUITINGMulticenter Outcome Registry of AnaLgesic Effect of SCS(MORALES) Registry Protocol
NCT05466110Not specifiedUNKNOWNSpinal Cord Stimulation Versus Instrumentation for FBSS
NCT05540756Not specifiedWITHDRAWNStudy on the Use of Intraoperative Neurophysiological Monitoring in Spinal Cord Stimulator Trials
NCT07535372Not specifiedNOT_YET_RECRUITINGASO Treatment for Syndromic Craniosynostoses
NCT02997020Not specifiedACTIVE_NOT_RECRUITINGIvacaftor for Acquired CFTR Dysfunction in Chronic Rhinosinusitis (EDSPD Protocol)
NCT03379701Not specifiedCOMPLETEDApplications of Nanotechnology and Chemical Sensors for the Detection and Identification of Chronic Sinusitis Subtypes by Respiratory Samples
NCT04868695Not specifiedRECRUITINGSubjective and Objective Outcome of ESS in CRSwNP