TXLNA
gene geneOn this page
Also known as DKFZp451J0118IL-14IL14
Summary
TXLNA (taxilin alpha, HGNC:30685) is a protein-coding gene on chromosome 1p35.2, encoding Alpha-taxilin (P40222). May be involved in intracellular vesicle traffic and potentially in calcium-dependent exocytosis in neuroendocrine cells.
Predicted to enable syntaxin binding activity. Predicted to be involved in exocytosis. Predicted to act upstream of or within B cell activation. Located in cytoplasm.
Source: NCBI Gene 200081 — RefSeq curated summary.
At a glance
- Clinical variants (ClinVar): 86 total
- Druggable target: yes
- MANE Select transcript:
NM_175852
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:30685 |
| Approved symbol | TXLNA |
| Name | taxilin alpha |
| Location | 1p35.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | DKFZp451J0118, IL-14, IL14 |
| Ensembl gene | ENSG00000084652 |
| Ensembl biotype | protein_coding |
| OMIM | 608676 |
| Entrez | 200081 |
Gene structure
Transcript identifiers
Ensembl transcripts: 15 — 15 protein_coding
ENST00000373609, ENST00000373610, ENST00000867264, ENST00000867265, ENST00000867266, ENST00000867267, ENST00000867268, ENST00000867269, ENST00000867270, ENST00000867271, ENST00000932072, ENST00000932073, ENST00000932074, ENST00000962758, ENST00000962759
RefSeq mRNA: 4 — MANE Select: NM_175852
NM_001376857, NM_001376858, NM_001376859, NM_175852
CCDS: CCDS353
Canonical transcript exons
ENST00000373610 — 11 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000542105 | 32192657 | 32192731 |
| ENSE00000763548 | 32193208 | 32193300 |
| ENSE00000763570 | 32194065 | 32194160 |
| ENSE00000825430 | 32187954 | 32188124 |
| ENSE00001170250 | 32190055 | 32190249 |
| ENSE00001170262 | 32184525 | 32184616 |
| ENSE00001170269 | 32181242 | 32181577 |
| ENSE00001246056 | 32179675 | 32179776 |
| ENSE00001461022 | 32194902 | 32198285 |
| ENSE00001664733 | 32192311 | 32192430 |
| ENSE00002051326 | 32180314 | 32180514 |
Expression profiles
Bgee: expression breadth ubiquitous, 266 present calls, max score 92.57.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 57.9913 / max 4234.9505, expressed in 1824 samples.
FANTOM5 promoters (6 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 1954 | 19.8219 | 1773 |
| 1949 | 17.0464 | 1800 |
| 1951 | 15.8688 | 1806 |
| 1948 | 3.6028 | 1640 |
| 1950 | 1.1670 | 817 |
| 1952 | 0.4844 | 241 |
Top tissues by expression
287 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| stromal cell of endometrium | CL:0002255 | 92.57 | gold quality |
| tendon of biceps brachii | UBERON:0008188 | 92.11 | gold quality |
| right adrenal gland | UBERON:0001233 | 91.67 | gold quality |
| left adrenal gland | UBERON:0001234 | 91.57 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 91.52 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 91.43 | gold quality |
| lower esophagus | UBERON:0013473 | 91.41 | gold quality |
| body of uterus | UBERON:0009853 | 91.36 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 91.32 | gold quality |
| right coronary artery | UBERON:0001625 | 91.25 | gold quality |
| left uterine tube | UBERON:0001303 | 91.14 | gold quality |
| adenohypophysis | UBERON:0002196 | 90.95 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 90.80 | gold quality |
| right lobe of liver | UBERON:0001114 | 90.78 | gold quality |
| islet of Langerhans | UBERON:0000006 | 90.77 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 90.75 | gold quality |
| adrenal gland | UBERON:0002369 | 90.72 | gold quality |
| adrenal cortex | UBERON:0001235 | 90.71 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 90.69 | gold quality |
| thoracic aorta | UBERON:0001515 | 90.57 | gold quality |
| ascending aorta | UBERON:0001496 | 90.52 | gold quality |
| esophagus | UBERON:0001043 | 89.96 | gold quality |
| pituitary gland | UBERON:0000007 | 89.87 | gold quality |
| aorta | UBERON:0000947 | 89.82 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 89.82 | gold quality |
| right ovary | UBERON:0002118 | 89.71 | gold quality |
| endocervix | UBERON:0000458 | 89.59 | gold quality |
| apex of heart | UBERON:0002098 | 89.39 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 89.36 | gold quality |
| popliteal artery | UBERON:0002250 | 89.35 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
177 targeting TXLNA, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-4692 | 100.00 | 67.32 | 2066 |
| HSA-MIR-4673 | 100.00 | 66.64 | 1490 |
| HSA-MIR-4481 | 100.00 | 66.42 | 1669 |
| HSA-MIR-4500 | 99.99 | 72.72 | 2367 |
| HSA-MIR-196A-1-3P | 99.99 | 72.15 | 2772 |
| HSA-MIR-4514 | 99.99 | 67.10 | 1870 |
| HSA-MIR-548AW | 99.99 | 72.57 | 3559 |
| HSA-MIR-19A-3P | 99.98 | 75.33 | 2762 |
| HSA-MIR-19B-3P | 99.98 | 75.44 | 2754 |
| HSA-LET-7A-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7B-5P | 99.98 | 72.31 | 1790 |
| HSA-LET-7C-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7E-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7F-5P | 99.98 | 72.56 | 1784 |
| HSA-LET-7G-5P | 99.98 | 72.37 | 1784 |
| HSA-LET-7I-5P | 99.98 | 72.37 | 1788 |
| HSA-MIR-98-5P | 99.98 | 72.33 | 1787 |
| HSA-MIR-4645-5P | 99.98 | 65.81 | 1284 |
| HSA-MIR-512-3P | 99.97 | 67.35 | 1049 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
| HSA-MIR-3065-5P | 99.97 | 71.56 | 3281 |
| HSA-MIR-570-3P | 99.96 | 72.41 | 4910 |
| HSA-LET-7D-5P | 99.96 | 71.76 | 1632 |
| HSA-MIR-4458 | 99.96 | 71.64 | 1650 |
| HSA-MIR-1468-3P | 99.96 | 72.74 | 3797 |
| HSA-MIR-4725-3P | 99.96 | 69.53 | 2520 |
| HSA-MIR-6780B-5P | 99.96 | 69.60 | 2562 |
| HSA-MIR-302E | 99.96 | 70.74 | 2669 |
| HSA-MIR-6721-5P | 99.93 | 68.92 | 2981 |
Literature-anchored findings (GeneRIF, showing 14)
- identification of isoforms; interaction with syntaxin [alpha-taxilin] (PMID:15184072)
- role for IL-14alpha (Txln gene product)in the development of both autoimmunity and lymphomagenesis (PMID:17015757)
- increases in IL-14 transcript levels may play a role in alloantibody formation after renal transplantation (PMID:18645499)
- IL-14a is important in the pathophysiology of Sjogren’s disease (PMID:19038581)
- analysis of a novel monoclonal antibody against interleukin-14alpha (PMID:19663695)
- alpha-taxilin may be involved in cell proliferation of hepatocellular carcinoma(HCC), and its expression can be a marker of malignant potential of HCC. (PMID:21042709)
- Increased alpha-taxilin protein expression is associated with the metastatic and invasive potential of renal cell cancer. (PMID:21551945)
- Alpha-taxilin is localized on intracellular components in a syntaxin-independent manner and that the alpha-taxilin-containing intracellular components are associated with the microtubule cytoskeleton. (PMID:22785156)
- alpha-taxilin plays an essential role for release of HBV-DNA containing particles. (PMID:23816704)
- alpha-taxilin interacts with SNX4 and plays a role in the recycling pathway of TfnR. (PMID:24690921)
- intrathyroidal production of IL-14 and IL-16 associated with the pathogenesis of autoimmune thyroid disease (PMID:25940130)
- Silencing of alpha-taxilin expression leads to increased release of infectious hepatitis C virus particles. (PMID:26527738)
- High TXLNA Expression Predicts Favourable Outcome for Pancreatic Adenocarcinoma Patients. (PMID:32185195)
- alpha-/gamma-Taxilin are required for centriolar subdistal appendage assembly and microtubule organization. (PMID:35119360)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | txlna | ENSDARG00000077037 |
| mus_musculus | Txlna | ENSMUSG00000053841 |
| rattus_norvegicus | Txlna | ENSRNOG00000048242 |
Paralogs (2): TXLNG (ENSG00000086712), TXLNB (ENSG00000164440)
Protein
Protein identifiers
Alpha-taxilin — P40222 (reviewed: P40222)
All UniProt accessions (1): P40222
UniProt curated annotations — full annotation on UniProt →
Function. May be involved in intracellular vesicle traffic and potentially in calcium-dependent exocytosis in neuroendocrine cells.
Subunit / interactions. Binds to the C-terminal coiled coil region of syntaxin family members STX1A, STX3A and STX4A, but not when these proteins are complexed with SNAP25, VAMP2 or STXBP1, suggesting that it interacts with syntaxins that do not form the SNARE complex.
Tissue specificity. Ubiquitous, with much higher expression in heart, kidney, liver and pancreas.
Similarity. Belongs to the taxilin family.
RefSeq proteins (4): NP_001363786, NP_001363787, NP_001363788, NP_787048* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR026183 | Taxilin_fam | Family |
Pfam: PF09728
UniProt features (18 total): sequence conflict 8, compositionally biased region 4, region of interest 2, modified residue 2, chain 1, coiled-coil region 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P40222-F1 | 75.29 | 0.43 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (2): 72, 515
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-449836 | Other interleukin signaling |
MSigDB gene sets: 136 (showing top):
REACTOME_CYTOKINE_SIGNALING_IN_IMMUNE_SYSTEM, GOBP_B_CELL_ACTIVATION, MORF_HDAC2, GOBP_VESICLE_MEDIATED_TRANSPORT, MONNIER_POSTRADIATION_TUMOR_ESCAPE_UP, GOBP_EXOCYTOSIS, BLALOCK_ALZHEIMERS_DISEASE_UP, SCHAEFFER_PROSTATE_DEVELOPMENT_6HR_DN, GOBP_SECRETION, MORF_PRKDC, LASTOWSKA_NEUROBLASTOMA_COPY_NUMBER_DN, MORF_AATF, MORF_ORC1L, BIOCARTA_CYTOKINE_PATHWAY, MARSON_BOUND_BY_E2F4_UNSTIMULATED
GO Biological Process (2): exocytosis (GO:0006887), B cell activation (GO:0042113)
GO Molecular Function (2): syntaxin binding (GO:0019905), protein binding (GO:0005515)
GO Cellular Component (4): extracellular region (GO:0005576), cytoplasm (GO:0005737), cytosol (GO:0005829), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Signaling by Interleukins | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 4 |
| vesicle-mediated transport | 1 |
| secretion by cell | 1 |
| vesicle fusion to plasma membrane | 1 |
| lymphocyte activation | 1 |
| SNARE binding | 1 |
| binding | 1 |
| intracellular anatomical structure | 1 |
| cytoplasm | 1 |
Protein interactions and networks
STRING
838 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| TXLNA | TSG101 | Q99816 | 810 |
| TXLNA | STX4 | Q12846 | 805 |
| TXLNA | STX3 | Q13277 | 795 |
| TXLNA | STX1A | Q16623 | 699 |
| TXLNA | STX8 | Q9UNK0 | 635 |
| TXLNA | IFNG | P01579 | 578 |
| TXLNA | IL5 | P05113 | 567 |
| TXLNA | STX7 | O15400 | 549 |
| TXLNA | IL19 | Q9UHD0 | 509 |
| TXLNA | IL13 | P35225 | 506 |
| TXLNA | IL4 | P05112 | 470 |
| TXLNA | IL11 | P20809 | 470 |
| TXLNA | ERVFRD-1 | P60508 | 446 |
| TXLNA | ERV3-1 | Q14264 | 446 |
| TXLNA | IL10 | P22301 | 445 |
IntAct
528 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| TXLNB | TXLNA | psi-mi:“MI:0915”(physical association) | 0.880 |
| TXLNA | TXLNB | psi-mi:“MI:0915”(physical association) | 0.880 |
| HIF1AN | APBA3 | psi-mi:“MI:0914”(association) | 0.850 |
| MED4 | TXLNA | psi-mi:“MI:0915”(physical association) | 0.840 |
| TXLNA | MED4 | psi-mi:“MI:0915”(physical association) | 0.840 |
| NDC80 | TXLNA | psi-mi:“MI:0915”(physical association) | 0.800 |
| TXLNA | KRT38 | psi-mi:“MI:0915”(physical association) | 0.800 |
| TXLNA | NDC80 | psi-mi:“MI:0915”(physical association) | 0.800 |
| CDR2 | TXLNA | psi-mi:“MI:0915”(physical association) | 0.780 |
| KRT31 | TXLNA | psi-mi:“MI:0915”(physical association) | 0.780 |
| TXLNA | KRT40 | psi-mi:“MI:0915”(physical association) | 0.780 |
| TXLNA | VPS52 | psi-mi:“MI:0915”(physical association) | 0.780 |
| TFIP11 | TXLNA | psi-mi:“MI:0915”(physical association) | 0.780 |
| TCL1A | TXLNA | psi-mi:“MI:0915”(physical association) | 0.780 |
| BTF3L4 | TXLNA | psi-mi:“MI:0915”(physical association) | 0.780 |
| GORASP2 | TXLNA | psi-mi:“MI:0915”(physical association) | 0.780 |
| WASHC3 | TXLNA | psi-mi:“MI:0915”(physical association) | 0.780 |
| TXLNA | KRT31 | psi-mi:“MI:0915”(physical association) | 0.780 |
| KRT40 | TXLNA | psi-mi:“MI:0915”(physical association) | 0.780 |
| VPS52 | TXLNA | psi-mi:“MI:0915”(physical association) | 0.780 |
BioGRID (376): TXLNA (Two-hybrid), TXLNA (Two-hybrid), TXLNA (Two-hybrid), TXLNA (Two-hybrid), TXLNA (Two-hybrid), TXLNA (Two-hybrid), TXLNA (Two-hybrid), TXLNA (Two-hybrid), TXLNA (Two-hybrid), TXLNA (Two-hybrid), TXLNA (Two-hybrid), TXLNA (Two-hybrid), TXLNA (Two-hybrid), TXLNA (Two-hybrid), TXLNA (Two-hybrid)
ESM2 similar proteins: A0PJP4, A0PJT0, A2A6T1, A2VDP1, D3YV10, D3ZUQ0, G9G127, O75150, O88448, P40222, P97817, Q08379, Q17QG3, Q2HJJ0, Q3U319, Q4R7K7, Q4V328, Q4V872, Q5DTM8, Q5EBL4, Q5PQM2, Q5RAU7, Q5VTR2, Q5XJA2, Q5ZLS3, Q62036, Q62839, Q6AYA0, Q6DFC2, Q6PAM1, Q6ZUS6, Q80YF0, Q86X02, Q8BR07, Q8C9S4, Q8CG73, Q8CJB9, Q8IYE1, Q8TD16, Q8VD04
Diamond homologs: P40222, Q6GVM5, Q6PAM1, Q8BHN1, Q8N3L3, Q8VBT1, Q9BZA5, Q9I969, Q9NUQ3
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 109 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Loss of Nlp from mitotic centrosomes | 9 | 19.8× | 8e-08 |
| Loss of proteins required for interphase microtubule organization from the centrosome | 9 | 19.8× | 8e-08 |
| AURKA Activation by TPX2 | 9 | 19.0× | 9e-08 |
| Anchoring of the basal body to the plasma membrane | 12 | 18.8× | 5e-10 |
| Recruitment of mitotic centrosome proteins and complexes | 9 | 17.0× | 2e-07 |
| Regulation of PLK1 Activity at G2/M Transition | 9 | 15.9× | 3e-07 |
| Recruitment of NuMA to mitotic centrosomes | 9 | 14.6× | 6e-07 |
| Formation of the cornified envelope | 6 | 7.3× | 7e-03 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| centriole replication | 5 | 37.8× | 1e-04 |
| morphogenesis of an epithelium | 6 | 21.3× | 1e-04 |
| centrosome cycle | 5 | 17.4× | 1e-03 |
| intermediate filament organization | 6 | 14.9× | 4e-04 |
| epithelial cell differentiation | 6 | 10.9× | 2e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
86 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 63 |
| Likely benign | 5 |
| Benign | 1 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1584 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:32180504:G:GT | donor_gain | 1.0000 |
| 1:32181554:A:T | donor_gain | 1.0000 |
| 1:32181571:GGTT:G | donor_gain | 1.0000 |
| 1:32184601:G:GT | donor_gain | 1.0000 |
| 1:32184604:G:GG | donor_gain | 1.0000 |
| 1:32187945:T:TA | acceptor_gain | 1.0000 |
| 1:32187950:CCAG:C | acceptor_loss | 1.0000 |
| 1:32187952:A:AG | acceptor_gain | 1.0000 |
| 1:32187952:AGCT:A | acceptor_gain | 1.0000 |
| 1:32187952:AGCTG:A | acceptor_gain | 1.0000 |
| 1:32187953:G:GT | acceptor_gain | 1.0000 |
| 1:32187953:GC:G | acceptor_gain | 1.0000 |
| 1:32187953:GCT:G | acceptor_gain | 1.0000 |
| 1:32187953:GCTG:G | acceptor_gain | 1.0000 |
| 1:32187953:GCTGG:G | acceptor_gain | 1.0000 |
| 1:32188126:T:C | donor_loss | 1.0000 |
| 1:32190246:GGAG:G | donor_gain | 1.0000 |
| 1:32190247:G:GT | donor_gain | 1.0000 |
| 1:32190250:GTA:G | donor_loss | 1.0000 |
| 1:32192303:T:TA | acceptor_gain | 1.0000 |
| 1:32192309:A:AG | acceptor_gain | 1.0000 |
| 1:32192309:A:T | acceptor_loss | 1.0000 |
| 1:32192310:G:GC | acceptor_gain | 1.0000 |
| 1:32192310:GC:G | acceptor_gain | 1.0000 |
| 1:32192310:GCA:G | acceptor_gain | 1.0000 |
| 1:32192310:GCAT:G | acceptor_gain | 1.0000 |
| 1:32192310:GCATA:G | acceptor_gain | 1.0000 |
| 1:32192395:G:GT | donor_gain | 1.0000 |
| 1:32192418:G:GT | donor_gain | 1.0000 |
| 1:32192421:G:GT | donor_gain | 1.0000 |
AlphaMissense
3598 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 1:32181308:T:C | L79P | 1.000 |
| 1:32184543:T:C | L175P | 1.000 |
| 1:32184594:T:C | L192P | 1.000 |
| 1:32184615:T:C | L199P | 1.000 |
| 1:32188036:T:C | L227P | 1.000 |
| 1:32188056:G:C | A234P | 1.000 |
| 1:32188069:G:C | R238P | 1.000 |
| 1:32188078:T:A | L241H | 1.000 |
| 1:32188078:T:C | L241P | 1.000 |
| 1:32188087:T:C | L244P | 1.000 |
| 1:32188092:C:A | R246S | 1.000 |
| 1:32188093:G:C | R246P | 1.000 |
| 1:32188099:T:C | L248P | 1.000 |
| 1:32188105:G:C | R250P | 1.000 |
| 1:32190095:G:C | R270P | 1.000 |
| 1:32190115:T:C | F277L | 1.000 |
| 1:32190116:T:C | F277S | 1.000 |
| 1:32190116:T:G | F277C | 1.000 |
| 1:32190117:C:A | F277L | 1.000 |
| 1:32190117:C:G | F277L | 1.000 |
| 1:32190128:T:A | L281Q | 1.000 |
| 1:32190128:T:C | L281P | 1.000 |
| 1:32190137:T:A | I284N | 1.000 |
| 1:32190137:T:G | I284S | 1.000 |
| 1:32190146:A:C | Q287P | 1.000 |
| 1:32190179:T:C | L298P | 1.000 |
| 1:32190192:C:A | N302K | 1.000 |
| 1:32190192:C:G | N302K | 1.000 |
| 1:32190200:T:C | L305P | 1.000 |
| 1:32190202:G:C | A306P | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000056294 (1:32186268 G>A,T), RS1000089966 (1:32185830 C>G,T), RS1000119851 (1:32190702 A>G), RS1000374182 (1:32197781 T>C), RS1000464886 (1:32183782 G>C), RS1000484779 (1:32198342 C>G,T), RS1000492288 (1:32179202 T>A), RS1000545665 (1:32178867 C>A,G,T), RS1000911177 (1:32179637 C>T), RS1001005750 (1:32197477 C>T), RS1001364939 (1:32179837 C>T), RS1001574640 (1:32191900 T>C), RS1001912226 (1:32193793 G>T), RS1002125984 (1:32194111 G>A), RS1002166786 (1:32184918 C>T)
Disease associations
OMIM: gene MIM:608676 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
0 associations (top):
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL6066423 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
2 potent at pChembl≥5 of 2 total, top 2 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 5.45 | Kd | 3539 | nM | CHEMBL5653589 |
| 5.45 | ED50 | 3539 | nM | CHEMBL5653589 |
PubChem BioAssay actives
1 with measured affinity, of 2 total; 1 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2149690: Binding affinity to human TXLNA incubated for 45 mins by Kinobead based pull down assay | kd | 3.5386 | uM |
CTD chemical–gene interactions
38 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | increases expression | 2 |
| Valproic Acid | affects expression, decreases expression | 2 |
| FR900359 | decreases phosphorylation | 1 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | decreases expression | 1 |
| perfluorooctanoic acid | decreases expression | 1 |
| coumarin | increases phosphorylation | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| ICG 001 | increases expression | 1 |
| bisphenol B | increases expression | 1 |
| Grape Seed Proanthocyanidins | affects cotreatment, decreases expression | 1 |
| LDN 193189 | affects cotreatment, decreases expression | 1 |
| picoxystrobin | decreases expression | 1 |
| Resveratrol | affects cotreatment, increases expression | 1 |
| Sunitinib | increases expression | 1 |
| Leflunomide | decreases expression | 1 |
| Benztropine | decreases expression | 1 |
| Caffeine | decreases phosphorylation | 1 |
| Catechin | affects cotreatment, decreases expression | 1 |
| Cisplatin | increases expression | 1 |
| Cuprizone | affects cotreatment, decreases expression | 1 |
| Doxorubicin | decreases expression | 1 |
| Enzyme Inhibitors | decreases activity, increases O-linked glycosylation | 1 |
| Ethyl Methanesulfonate | increases expression | 1 |
| Haloperidol | decreases expression, affects cotreatment | 1 |
| Ivermectin | decreases expression | 1 |
| Lead | affects expression | 1 |
| Methyl Methanesulfonate | increases expression | 1 |
| Plant Extracts | affects cotreatment, increases expression | 1 |
ChEMBL screening assays
1 unique, capped per target: 1 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL5652732 | Binding | Binding affinity to human TXLNA incubated for 45 mins by Kinobead based pull down assay | NVP-BHG712: Effects of Regioisomers on the Affinity and Selectivity toward the EPHrin Family. — ChemMedChem |
Cellosaurus cell lines
1 cell lines: 1 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B2K0 | Abcam HeLa TXLNA KO | Cancer cell line | Female |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.