TYR
gene geneOn this page
Also known as OCAIAOCA1AOCA1
Summary
TYR (tyrosinase, HGNC:12442) is a protein-coding gene on chromosome 11q14.3, encoding Tyrosinase (P14679). This is a copper-containing oxidase that functions in the formation of pigments such as melanins and other polyphenolic compounds.
The enzyme encoded by this gene catalyzes the first 2 steps, and at least 1 subsequent step, in the conversion of tyrosine to melanin. The enzyme has both tyrosine hydroxylase and dopa oxidase catalytic activities, and requires copper for function. Mutations in this gene result in oculocutaneous albinism, and nonpathologic polymorphisms result in skin pigmentation variation. The human genome contains a pseudogene similar to the 3’ half of this gene.
Source: NCBI Gene 7299 — RefSeq curated summary.
At a glance
- Gene–disease (curated): oculocutaneous albinism type 1 (Definitive, ClinGen) — +5 more curated relationships
- GWAS associations: 57 (top 1% of genes corpus-wide)
- Clinical variants (ClinVar): 890 total — 120 pathogenic, 125 likely-pathogenic (top 4% of genes corpus-wide)
- GTEx eGene: eQTL in 2 tissues, sQTL in 0 (q < 0.05)
- Phenotypes (HPO): 42
- Drug target: yes — 3 curated mechanism-of-action drugs; 10 molecules with ChEMBL bioactivity (top 3% of genes corpus-wide)
- Approved drugs (ChEMBL mechanism of action): 2 — Mequinol, Monobenzone
- Constraint (gnomAD): pLI 0.00 (LoF-tolerant), LOEUF 1.35 (unconstrained)
- MANE Select transcript:
NM_000372 - Interaction hub: 2,296 STRING partners (top 5% of genes corpus-wide)
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:12442 |
| Approved symbol | TYR |
| Name | tyrosinase |
| Location | 11q14.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | OCAIA, OCA1A, OCA1 |
| Ensembl gene | ENSG00000077498 |
| Ensembl biotype | protein_coding |
| OMIM | 606933 |
| Entrez | 7299 |
Gene structure
Transcript identifiers
Ensembl transcripts: 3 — 2 protein_coding_CDS_not_defined, 1 protein_coding
MANE Select: ENST00000263321
Transcript support level (Ensembl TSL; 1 = fully mRNA-supported): TSL 1: 2, TSL 5: 1
ENST00000263321, ENST00000526139, ENST00000528243
RefSeq mRNA: 1 — MANE Select: NM_000372
NM_000372
CCDS: CCDS8284
Canonical transcript exons
ENST00000263321 — 5 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000842732 | 89227823 | 89227970 |
| ENSE00001153836 | 89295143 | 89295759 |
| ENSE00002200807 | 89177875 | 89178772 |
| ENSE00003505677 | 89191202 | 89191418 |
| ENSE00003681170 | 89284773 | 89284954 |
Expression profiles
Bgee: expression breadth broad, 59 present calls, max score 84.83.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 8.0616 / max 1859.9847, expressed in 69 samples.
Highest expression (Bgee): pigmented layer of retina, male germ line stem cell (sensu Vertebrata) in testis, upper leg skin, skin of leg, skin of abdomen.
Genetic regulation across tissues (GTEx eQTL / sQTL)
TYR is an eGene in GTEx v10 — its expression is genetically regulated (eQTL) in 2 tissues and its splicing (sQTL) in 0 (q < 0.05). Strongest associations first; slope = normalized effect of the lead variant’s alternative allele.
2 significant tissue × QTL associations:
| Tissue | QTL | q-value | Slope | Lead variant |
|---|---|---|---|---|
| Skin Not Sun Exposed Suprapubic | eqtl | 1.0e-03 | -0.28 | 11:89042605:A:C |
| Skin Sun Exposed Lower leg | eqtl | 4.9e-03 | +0.12 | 11:89059433:A:C |
FANTOM5 promoters
2 alternative TSS:
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 116160 | 4.2954 | 61 |
| 116161 | 3.7662 | 56 |
Top tissues by expression
showing 100 of 204 tissues by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| pigmented layer of retina | UBERON:0001782 | 84.83 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 84.03 | gold quality |
| upper leg skin | UBERON:0004262 | 75.56 | gold quality |
| skin of leg | UBERON:0001511 | 75.12 | gold quality |
| skin of abdomen | UBERON:0001416 | 74.26 | gold quality |
| zone of skin | UBERON:0000014 | 73.96 | gold quality |
| calcaneal tendon | UBERON:0003701 | 68.10 | gold quality |
| penis | UBERON:0000989 | 67.27 | silver quality |
| mammalian vulva | UBERON:0000997 | 66.03 | silver quality |
| buccal mucosa cell | CL:0002336 | 58.31 | gold quality |
| tendon | UBERON:0000043 | 57.56 | gold quality |
| lower lobe of lung | UBERON:0008949 | 54.46 | silver quality |
| eye | UBERON:0000970 | 51.95 | silver quality |
| descending thoracic aorta | UBERON:0002345 | 50.81 | gold quality |
| ascending aorta | UBERON:0001496 | 47.91 | gold quality |
| thoracic aorta | UBERON:0001515 | 47.91 | gold quality |
| skin of hip | UBERON:0001554 | 45.66 | silver quality |
| lateral globus pallidus | UBERON:0002476 | 44.96 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 43.37 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 43.07 | silver quality |
| aorta | UBERON:0000947 | 42.77 | gold quality |
| secondary oocyte | CL:0000655 | 42.57 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 42.29 | gold quality |
| ganglionic eminence | UBERON:0004023 | 42.13 | gold quality |
| right coronary artery | UBERON:0001625 | 41.93 | silver quality |
| oviduct epithelium | UBERON:0004804 | 41.68 | gold quality |
| vastus lateralis | UBERON:0001379 | 41.41 | gold quality |
| quadriceps femoris | UBERON:0001377 | 41.37 | gold quality |
| superficial temporal artery | UBERON:0001614 | 41.33 | gold quality |
| biceps brachii | UBERON:0001507 | 41.25 | gold quality |
| trigeminal ganglion | UBERON:0001675 | 41.24 | gold quality |
| palpebral conjunctiva | UBERON:0001812 | 41.10 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 40.98 | gold quality |
| mouth mucosa | UBERON:0003729 | 40.81 | gold quality |
| amniotic fluid | UBERON:0000173 | 40.69 | gold quality |
| jejunal mucosa | UBERON:0000399 | 40.59 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 40.45 | gold quality |
| myocardium | UBERON:0002349 | 40.45 | gold quality |
| gingival epithelium | UBERON:0001949 | 40.43 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 40.33 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 40.29 | gold quality |
| cortical plate | UBERON:0005343 | 40.20 | silver quality |
| jejunum | UBERON:0002115 | 40.18 | gold quality |
| mammary duct | UBERON:0001765 | 40.08 | gold quality |
| cartilage tissue | UBERON:0002418 | 40.06 | gold quality |
| globus pallidus | UBERON:0001875 | 39.99 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 39.95 | gold quality |
| deltoid | UBERON:0001476 | 39.83 | gold quality |
| saphenous vein | UBERON:0007318 | 39.83 | gold quality |
| parotid gland | UBERON:0001831 | 39.81 | gold quality |
| oocyte | CL:0000023 | 39.80 | gold quality |
| urethra | UBERON:0000057 | 39.80 | gold quality |
| heart right ventricle | UBERON:0002080 | 39.79 | gold quality |
| minor salivary gland | UBERON:0001830 | 39.78 | gold quality |
| pericardium | UBERON:0002407 | 39.77 | gold quality |
| layer of synovial tissue | UBERON:0007616 | 39.77 | gold quality |
| endothelial cell | CL:0000115 | 39.75 | gold quality |
| synovial joint | UBERON:0002217 | 39.70 | gold quality |
| dorsal root ganglion | UBERON:0000044 | 39.68 | gold quality |
| bronchial epithelial cell | CL:0002328 | 39.65 | gold quality |
| decidua | UBERON:0002450 | 39.65 | gold quality |
| bronchus | UBERON:0002185 | 39.64 | gold quality |
| tendon of biceps brachii | UBERON:0008188 | 39.60 | gold quality |
| inferior vagus X ganglion | UBERON:0005363 | 39.57 | gold quality |
| superior surface of tongue | UBERON:0007371 | 39.56 | gold quality |
| pylorus | UBERON:0001166 | 39.55 | gold quality |
| renal medulla | UBERON:0000362 | 39.53 | gold quality |
| pons | UBERON:0000988 | 39.51 | gold quality |
| thymus | UBERON:0002370 | 39.50 | gold quality |
| medulla oblongata | UBERON:0001896 | 39.48 | gold quality |
| superior vestibular nucleus | UBERON:0007227 | 39.47 | gold quality |
| cardia of stomach | UBERON:0001162 | 39.46 | gold quality |
| colonic mucosa | UBERON:0000317 | 39.45 | gold quality |
| parietal pleura | UBERON:0002400 | 39.45 | gold quality |
| sperm | CL:0000019 | 39.40 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 39.40 | gold quality |
| dorsal plus ventral thalamus | UBERON:0001897 | 39.38 | gold quality |
| tongue | UBERON:0001723 | 39.37 | gold quality |
| cerebellar vermis | UBERON:0004720 | 39.37 | gold quality |
| subthalamic nucleus | UBERON:0001906 | 39.35 | gold quality |
| ventral tegmental area | UBERON:0002691 | 39.35 | gold quality |
| trachea | UBERON:0003126 | 39.33 | gold quality |
| parietal lobe | UBERON:0001872 | 39.32 | gold quality |
| vena cava | UBERON:0004087 | 39.31 | gold quality |
| pharyngeal mucosa | UBERON:0000355 | 39.27 | gold quality |
| entorhinal cortex | UBERON:0002728 | 39.24 | gold quality |
| substantia nigra pars compacta | UBERON:0001965 | 39.23 | gold quality |
| visceral pleura | UBERON:0002401 | 39.23 | gold quality |
| postcentral gyrus | UBERON:0002581 | 39.23 | gold quality |
| body of tongue | UBERON:0011876 | 39.22 | gold quality |
| medial globus pallidus | UBERON:0002477 | 39.18 | gold quality |
| trabecular bone tissue | UBERON:0002483 | 39.18 | gold quality |
| substantia nigra pars reticulata | UBERON:0001966 | 39.11 | gold quality |
| tibial artery | UBERON:0007610 | 39.05 | gold quality |
| nasal cavity epithelium | UBERON:0005384 | 39.04 | gold quality |
| lateral nuclear group of thalamus | UBERON:0002736 | 39.00 | gold quality |
| corpus epididymis | UBERON:0004359 | 38.98 | gold quality |
| saliva-secreting gland | UBERON:0001044 | 38.96 | gold quality |
| popliteal artery | UBERON:0002250 | 38.94 | gold quality |
| tibia | UBERON:0000979 | 38.93 | gold quality |
Single-cell (SCXA)
Detected in 4 experiment(s), a significant marker in 3.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-8142 | yes | 20.21 |
| E-GEOD-135922 | yes | 8.81 |
| E-ENAD-20 | no | 1124.40 |
| E-ANND-3 | no | 0.00 |
HPA expression
RNA tissue specificity: Tissue enriched
34 HPA tissues / cells by nTPM:
| Tissue / cell | Axis | nTPM | Protein (IHC) |
|---|---|---|---|
| Skin 1 | tissue | 29.8 | high |
| Breast | tissue | 0.8 | not detected |
| Ventral forebrain | tissue | 0.8 | |
| Corpus callosum | tissue | 0.7 | |
| Basal ganglia | tissue | 0.6 | not detected |
| Periaqueductal gray | tissue | 0.6 | |
| Substantia nigra | tissue | 0.5 | |
| Spinal cord | tissue | 0.5 | |
| Hippocampal formation | tissue | 0.5 | |
| Septum | tissue | 0.5 | |
| Putamen | tissue | 0.4 | |
| Amygdala | tissue | 0.4 | |
| Midbrain | tissue | 0.4 | |
| Thalamus | tissue | 0.4 | |
| Hypothalamus | tissue | 0.4 | |
| Cerebral cortex | tissue | 0.3 | not detected |
| Pons | tissue | 0.3 | |
| Medulla oblongata | tissue | 0.3 | |
| Superior colliculi | tissue | 0.3 | |
| Olfactory bulb | tissue | 0.3 | |
| Insular cortex | tissue | 0.3 | |
| Prefrontal cortex | tissue | 0.2 | |
| Testis | tissue | 0.2 | not detected |
| Entorhinal cortex | tissue | 0.2 | |
| Retrosplenial and cingulate cortex | tissue | 0.2 | |
| Retrosplenial cortex | tissue | 0.2 | |
| Temporal cortex | tissue | 0.2 | |
| Occipital cortex | tissue | 0.2 | |
| Retina | tissue | 0.1 | high |
| Motor cortex | tissue | 0.1 | |
| Bone marrow | tissue | 0.1 | not detected |
| Caudate putamen | tissue | 0.1 | |
| Somatosensory cortex | tissue | 0.1 | |
| Hair | tissue | -1.0 | high |
Brain sub-regions (HPA Brain Atlas): detected in 15; highest nTPM — White matter (0.7), Dorsal hippocampus (0.5), Ventral spinal cord (0.5), Subiculum (0.4), Dorsal spinal cord (0.3).
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): BHLHA15, CDH3, CREB1, HNF1A, LEF1, MITF, NEUROD1, OTX2, PAX3, PAX6, PITX2, POU3F2, POU5F1, POU6F2, PPARG, SOX10, SOX9, TBPL1, TCF4, TFE3, TFEB, TP53, USF1
miRNA regulators (miRDB)
Targeting TYR by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific).
21 miRNAs:
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-551B-5P | 99.96 | 71.28 | 3493 |
| HSA-MIR-4760-3P | 99.93 | 70.50 | 2385 |
| HSA-MIR-450B-5P | 99.92 | 71.48 | 3175 |
| HSA-MIR-605-3P | 99.88 | 69.22 | 1833 |
| HSA-MIR-4668-5P | 99.79 | 70.58 | 3782 |
| HSA-MIR-1208 | 99.70 | 68.28 | 1533 |
| HSA-MIR-4530 | 99.69 | 66.47 | 1509 |
| HSA-MIR-4696 | 99.48 | 67.48 | 1040 |
| HSA-MIR-4326 | 98.97 | 67.63 | 962 |
| HSA-MIR-330-5P | 98.73 | 67.63 | 1788 |
| HSA-MIR-1304-3P | 98.29 | 66.44 | 1207 |
| HSA-MIR-4446-3P | 97.91 | 64.29 | 991 |
| HSA-MIR-10397-3P | 97.78 | 65.70 | 601 |
| HSA-MIR-6783-5P | 97.67 | 67.21 | 1528 |
| HSA-MIR-6824-5P | 97.41 | 68.43 | 583 |
| HSA-MIR-27A-5P | 97.01 | 65.63 | 528 |
| HSA-MIR-7161-3P | 96.79 | 68.79 | 798 |
| HSA-MIR-6762-5P | 96.55 | 64.62 | 972 |
| HSA-MIR-6845-5P | 96.55 | 64.65 | 969 |
| HSA-MIR-3690 | 96.44 | 65.18 | 737 |
| HSA-MIR-571 | 95.38 | 66.54 | 671 |
Functional genomics
gnomAD constraint: pLI 1.11e-21, LOEUF 1.35, missense Z -0.846 — population loss-of-function intolerance (pLI ≥ 0.9 = LoF-intolerant; lower LOEUF = more constrained). gnomAD
Regional missense constraint (gnomAD RMC): no regional variation along ENST00000263321 — one region, missense o/e 1.13.
Literature-anchored findings (GeneRIF, showing 40)
- induction of retention in the early secretory pathway by abnormal acidification of melanoma cells (PMID:11812790)
- We report a novel missense substitution, R239W(CGG –> TGG) of the tyrosinase gene in a patient with tyrosinase-negative OCA. (PMID:11858948)
- role of P protein and tyrosinase in oculocutaneous albinism (PMID:12028586)
- Data suggest that maintenance of a chronically hyperpigmented phenotype in chronically photoexposed human skin is the result of a stable increase in the number of tyrosinase positive melanocytes at these sites. (PMID:12519123)
- Data reveal DCoH/HNF-1 alpha expression and transcriptional activity in human epidermal melanocytes in vitro and in situ and identified tyrosinase, the key enzyme for pigmentation, as a new transcriptional target. (PMID:12565907)
- We show that TYR has measurable effects on skin pigmentation differences between the west African and west European parental populations (PMID:12579416)
- This melanoma-associated marker was detected in melanoma cell lines. (PMID:12710945)
- no mutations in oculocutaneou albinism (PMID:12727022)
- A candidate gene for pigmentation. (PMID:12817591)
- Antigen-specific T lymphocyte reactivity to MelanA/MART-1 and tyrosinase peptides was not observed ex vivo in our patients, and only one patient demonstrated responses to MelanA/MART-1 and tyrosinase peptides following in vitro re-stimulation. (PMID:12925214)
- These results suggest that phosphorylation of tyrosinase by PKC-beta induces a complex formation between tyrosinase and TRP-1. (PMID:14623273)
- results shows that organellar pH, proteasome activity, and down-regulation of tyrosinase-related protein 1(TYRP1) expression all contribute to the lack of pigmentation in tyrosinase-positive amelanotic melanoma cells (PMID:14634018)
- DNA variations - mutations and polymorphisms - in about 150 patients with Oculocutaneous albinism (PMID:15146472)
- IVS2-10deltt-7t-a was present in 3 out of 18 alleles in three families (16%), P310insC was present in three alleles in three families (16%) and R278X was found in three alleles (16%), and G97V (290 G-T) was found in 1 out of 18 alleles (PMID:15381243)
- Our study reports the distribution of two novel frameshift and a previously reported nonsense mutations in four OCA1 families from the Indian population. (PMID:15635296)
- Data show that oculocutaneous albinism soluble tyrosinase is an endoplasmic reticulum-associated degradation substrate that, unlike other albino tyrosinases, associates with calreticulin and BiP/GRP78, but not calnexin. (PMID:15677452)
- Endothelin-1 increased tyrosinase levels in melanocytes but suppressed enzyme activity. (PMID:15838343)
- fibroblasts in vitro, particularly when deliberately stressed, have the ability to increase dopa oxidase(tyrosinase) activity in melanocytes of the hair, the skin and the eye (PMID:15854130)
- Sequensce databases contribute to demonstrating novel mutations in tyrosinase of albinism in Indians and Japanese. (PMID:15885985)
- glycan-specific oxidoreductase ERp57 was cross-linked to type I membrane glycoprotein tyrosinase when calnexin and calreticulin were associated (PMID:15958486)
- OCA1 in the Tili population is due to the occurrence of a founder mutation in the TYR as indicated by haplotype analysis. Higher prevalence of the mutation in the population group is due to marriage within the same community. (PMID:16056219)
- the tyrosinase autoantigen was immunorecognized with the same molecular pattern by sera from vitiligo and melanoma patients (PMID:16272362)
- demonstrated that these cells possess tyrosinase as well as L-tyrosine hydroxylase (TH) activity and synthesize melanosomes (PMID:16447258)
- Human Placental protein/peptide fraction mediated increase in tyrosinase expression occurred through transcriptional upregulation to stimulate melanogenesis in primary melanocyte. (PMID:16477373)
- a tyrosinase mutation may have a role in type 1A oculocutaneous albinism (case report) (PMID:16517127)
- TYR is not a modifier of the CYP1B1-associated PCG (primary congenital glaucoma) phenotype in the Saudi Arabian population. (PMID:16565383)
- the transmembrane anchor of a protein may crucially, albeit indirectly, control the folding pathway of the ectodomain, as shown with tyrosinase (PMID:16737954)
- Missense mutations in the tyrosinase gene is asociated with oculocutaneous albinism type 1 (PMID:16907708)
- No genetic susceptibility or increased risk attributed to the tyrosinase gene family in Vogt-Koyanagi-Harada disease in Japanese. (PMID:17200659)
- The expression levels of tyrosinase mRNA and protein were also reduced by paeonol. (PMID:17265558)
- tyrosinase has a role in progression of metastatic melanoma (PMID:17496782)
- tyrosinase has a role in progression of melanoma (PMID:17496783)
- tyrosinase and membrane associated transporter protein polymorphisms may have roles in oculocutaneous albinism type 1 and type 4 in the German population (PMID:17516931)
- data show that chloride ion inhibited tyrosinase in a competitive manner (PMID:17718595)
- Anemonin, an active compound of C. crassifolia, inhibits melanin synthesis by inhibiting the transcription of the genes encoding TYR, TRP1, and TRP2. (PMID:17766092)
- analysis of the mammalian tyrosinase active site with loss of function mutations (PMID:17850513)
- Measurement of Melan-A, gp100, MAGE-3, MIA and tyrosinase represents a prognostic factor and a method for early detection of metastasis and treatment response of melanoma patients. (PMID:18181974)
- The absence of evidence for projection abnormalities in human OCA1a carriers contrasts with the previously reported evidence for abnormalities in cat-carriers of tyrosinase-related albinism. (PMID:18296661)
- Most patients with AROA (autosomal recessive ocular albinism) represent phenotypically mild variants of oculocutaneous albinism , well over half of which is OCA1. (PMID:18326704)
- Tyrosinase-, gp100-, or TRP-2-specific CD8(+) T cells could not be identified in the peripheral blood of individuals with vitiligo. (PMID:18337837)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | tyr | ENSDARG00000039077 |
| mus_musculus | Tyr | ENSMUSG00000004651 |
| rattus_norvegicus | Tyr | ENSRNOG00000016421 |
| caenorhabditis_elegans | WBGENE00010661 |
Paralogs (2): DCT (ENSG00000080166), TYRP1 (ENSG00000107165)
Mouse-model phenotypes
Observed phenotypes of the mouse ortholog (MGI:98880) from MGI (Alliance of Genome Resources) — knockout/mutant phenotypes, ranked by annotation count. 58 distinct phenotype terms.
| Mouse phenotype (MP) | Records |
|---|---|
| absent coat pigmentation | 23 |
| diluted coat color | 14 |
| absent eye pigmentation | 14 |
| abnormal coat/hair pigmentation | 12 |
| absent skin pigmentation | 7 |
| decreased eye pigmentation | 7 |
| ocular albinism | 5 |
| embryonic lethality before implantation, complete penetrance | 4 |
| abnormal eye pigmentation | 3 |
| premature death | 3 |
| neonatal lethality, complete penetrance | 3 |
| perinatal lethality, complete penetrance | 3 |
| embryonic lethality at implantation, complete penetrance | 3 |
| absent hair follicle melanin granules | 2 |
| mottled coat | 2 |
| induced chromosome breakage | 2 |
| abnormal hair follicle melanogenesis | 2 |
| variegated coat color | 2 |
| hypopigmentation | 2 |
| abnormal ear pigmentation | 1 |
| abnormal cell morphology | 1 |
| irregular coat pigmentation | 1 |
| belly spot | 1 |
| shiny fur | 1 |
| abnormal retina photoreceptor morphology | 1 |
+33 more (showing top 25).
Additional cross-species homologs
Sequence homologs in species beyond Ensembl Compara’s model organisms, by Diamond local protein alignment (% sequence identity; best hit per species). Lower-identity rows are more distant homologs. The matched accessions’ gene symbols aren’t in biobtree yet, so each row shows the UniProt accession.
| Organism | UniProt | Identity | Method |
|---|---|---|---|
| Gorilla gorilla gorilla | Q9BDE0 | 99.8% | Diamond |
| Gallus gallus | P55024 | 97.8% | Diamond |
| Coturnix japonica | Q08410 | 97.8% | Diamond |
| Pelophylax nigromaculatus | Q04604 | 94.5% | Diamond |
| Pelophylax lessonae | Q0MVP0 | 94.5% | Diamond |
| Canis lupus familiaris | P54834 | 94.2% | Diamond |
| Felis catus | P55033 | 94.2% | Diamond |
| Bos taurus | Q8WN57 | 90.5% | Diamond |
| Sus scrofa | Q4R1H1 | 90.4% | Diamond |
| Streptomyces lincolnensis | P55023 | 82.5% | Diamond |
| Pelodiscus sinensis | P55026 | 78.8% | Diamond |
| Ambystoma mexicanum | P55027 | 75.1% | Diamond |
| Carassius auratus | P55028 | 69.0% | Diamond |
| Oryzias latipes | P55025 | 63.0% | Diamond |
| Streptomyces griseus subsp. griseus NBRC 13350 | B1VTI5 | 49.5% | Diamond |
Genomic neighbors (locus context)
Genes flanking this one on the chromosome (NCBI/Entrez gene neighborhood). Positional context only — some neighbors share regulatory elements (bidirectional promoters, antisense/overlapping transcripts), but chromosomal adjacency is not itself a functional relationship (see Interactions for that).
| Symbol | Type | Entrez |
|---|---|---|
| GRM5-AS1 | ncRNA | 100873989 |
| GRM5 | protein-coding | 2915 |
| NOX4 | protein-coding | 50507 |
| CTSC | protein-coding | 1075 |
Protein
Protein identifiers
Tyrosinase — P14679 (reviewed: P14679)
Alternative names: LB24-AB, Monophenol monooxygenase, SK29-AB, Tumor rejection antigen AB
All UniProt accessions (2): L8B082, P14679
UniProt curated annotations — full annotation on UniProt →
Function. This is a copper-containing oxidase that functions in the formation of pigments such as melanins and other polyphenolic compounds. Catalyzes the initial and rate limiting step in the cascade of reactions leading to melanin production from tyrosine. In addition to hydroxylating tyrosine to DOPA (3,4-dihydroxyphenylalanine), also catalyzes the oxidation of DOPA to DOPA-quinone, and possibly the oxidation of DHI (5,6-dihydroxyindole) to indole-5,6 quinone.
Subunit / interactions. Forms an OPN3-dependent complex with DCT in response to blue light in melanocytes.
Subcellular location. Melanosome membrane. Melanosome.
Post-translational modifications. Glycosylated.
Disease relevance. Albinism, oculocutaneous, 1A (OCA1A) [MIM:203100] An autosomal recessive disorder in which the biosynthesis of melanin pigment is absent in skin, hair, and eyes. It is characterized by complete lack of tyrosinase activity due to production of an inactive enzyme. Patients present with a life-long absence of melanin pigment after birth, and manifest increased sensitivity to ultraviolet radiation with predisposition to skin cancer. Visual anomalies include decreased acuity, nystagmus, strabismus and photophobia. The disease is caused by variants affecting the gene represented in this entry. Albinism, oculocutaneous, 1B (OCA1B) [MIM:606952] An autosomal recessive disorder in which the biosynthesis of melanin pigment is reduced in skin, hair, and eyes. It is characterized by partial lack of tyrosinase activity. Patients have white hair at birth that rapidly turns yellow or blond. They manifest the development of minimal-to-moderate amounts of cutaneous and ocular pigment. Some patients may have with white hair in the warmer areas (scalp and axilla) and progressively darker hair in the cooler areas (extremities). This variant phenotype is due to a loss of tyrosinase activity above 35-37 degrees C. The disease is caused by variants affecting the gene represented in this entry.
Cofactor. Binds 2 copper ions per subunit.
Induction. Increased expression after UVB irradiation.
Polymorphism. Genetic variants in TYR define the skin/hair/eye pigmentation variation locus 3 (SHEP3) [MIM:601800]. Hair, eye and skin pigmentation are among the most visible examples of human phenotypic variation, with a broad normal range that is subject to substantial geographic stratification. In the case of skin, individuals tend to have lighter pigmentation with increasing distance from the equator. By contrast, the majority of variation in human eye and hair color is found among individuals of European ancestry, with most other human populations fixed for brown eyes and black hair. Compound heterozygosity for the R402Q polymorphism and a mutant allele of TYR is a common cause of autosomal recessive ocular albinism. The R402Q polymorphism is also found in Waardenburg syndrome type II with ocular albinism in association with a deletion in the MITF gene.
Similarity. Belongs to the tyrosinase family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P14679-1 | 1 | yes |
| P14679-2 | 2 |
RefSeq proteins (1): NP_000363* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR002227 | Tyrosinase_Cu-bd | Domain |
| IPR008922 | Di-copper_centre_dom_sf | Homologous_superfamily |
| IPR050316 | Tyrosinase-like | Family |
Pfam: PF00264
Enzyme classification (BRENDA)
- EC 1.14.18.1 — tyrosinase (BRENDA: 187 organisms, 724 substrates, 1610 inhibitors, 691 Km, 303 kcat entries)
Substrate kinetics (BRENDA)
153 substrates with measured Km, best-characterized 15. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| L-DOPA | 0.016–1930 | 104 |
| CATECHOL | 0.01–2250 | 60 |
| L-TYROSINE | 0.014–145 | 56 |
| 4-METHYLCATECHOL | 0.1–2000 | 33 |
| DOPAMINE | 0.11–122 | 23 |
| TYRAMINE | 0.0077–9.53 | 16 |
| P-CRESOL | 0.001–130 | 15 |
| CHLOROGENIC ACID | 0.06–129.5 | 14 |
| D-TYROSINE | 1.2–15 | 14 |
| PYROGALLOL | 0.3–3000 | 12 |
| CAFFEIC ACID | 0.037–174.5 | 11 |
| CATECHIN | 0.479–33.7 | 11 |
| O2 | 0.015–421 | 11 |
| 4-TERT-BUTYLCATECHOL | 0.263–2.8 | 9 |
| D-DOPA | 0.026–28.7 | 9 |
Catalyzed reactions (Rhea)
- L-tyrosine + O2 = L-dopaquinone + H2O (RHEA:18117)
- 2 L-dopa + O2 = 2 L-dopaquinone + 2 H2O (RHEA:34287)
- 2 5,6-dihydroxyindole-2-carboxylate + O2 = 2 indole-5,6-quinone-2-carboxylate + 2 H2O (RHEA:68388)
UniProt features (145 total): sequence variant 119, binding site 6, glycosylation site 6, sequence conflict 6, splice variant 2, topological domain 2, signal peptide 1, chain 1, transmembrane region 1, region of interest 1
Structure
Experimental structures (PDB)
1 structures by resolution:
| PDB | Title | Method | Resolution (Å) |
|---|---|---|---|
| 7RK7 | The complex between TIL 1383i TCR and human Class I MHC HLA-A2 with the bound … | X-RAY DIFFRACTION | 2.54 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P14679-F1 | 89.79 | 0.81 |
Human Protein Atlas
Protein class: Enzymes, ENZYME proteins, Oxidoreductases, Metabolic proteins, Transporters, Predicted membrane proteins, Disease related genes, FDA approved drug targets, Small molecule drugs, Human disease related genes, Congenital disorders of metabolism, Congenital disorders of amino acid metabolism
Protein evidence: Evidence at protein level
Subcellular location (HPA, imaging): vesicles
Antibody reliability (HPA): IH enhanced · IF enhanced
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (6)
| Position | Role |
|---|---|
| 367 | Cu cation |
| 390 | Cu cation |
| 180 | Cu cation |
| 202 | Cu cation |
| 211 | Cu cation |
| 363 | Cu cation |
Glycosylation sites (6)
| Type | Positions |
|---|---|
| N-linked (glcnac…) asparagine | 86, 111, 161, 230, 337, 371 |
Function
Pathways and Gene Ontology
Reactome pathways
2 curated (TAS) of 7; 0 disease pathways. Curated-first; evidence = TAS (manually curated) vs IEA (electronic inference).
7 pathways:
| ID | Pathway | Evidence |
|---|---|---|
| R-HSA-5662702 | Melanin biosynthesis | curated |
| R-HSA-9824585 | Regulation of MITF-M-dependent genes involved in pigmentation | curated |
| R-HSA-1266738 | Developmental Biology | — |
| R-HSA-9856651 | MITF-M-dependent gene expression | — |
| R-HSA-9730414 | MITF-M-regulated melanocyte development | — |
| R-HSA-1430728 | Metabolism | — |
| R-HSA-71291 | Metabolism of amino acids and derivatives | — |
MSigDB gene sets: 251 (showing top):
GOBP_PHENOL_CONTAINING_COMPOUND_METABOLIC_PROCESS, MODULE_52, GOBP_RESPONSE_TO_NITROGEN_COMPOUND, GOBP_PHENOL_CONTAINING_COMPOUND_BIOSYNTHETIC_PROCESS, SWEET_KRAS_ONCOGENIC_SIGNATURE, GOMF_OXIDOREDUCTASE_ACTIVITY_ACTING_ON_PAIRED_DONORS_WITH_INCORPORATION_OR_REDUCTION_OF_MOLECULAR_OXYGEN, GOBP_ALPHA_AMINO_ACID_METABOLIC_PROCESS, GOBP_THYMUS_DEVELOPMENT, MCBRYAN_PUBERTAL_TGFB1_TARGETS_DN, MODULE_335, MODULE_16, LHX3_01, ACEVEDO_LIVER_CANCER_WITH_H3K27ME3_UP, HERNANDEZ_ABERRANT_MITOSIS_BY_DOCETACEL_2NM_UP, HERNANDEZ_MITOTIC_ARREST_BY_DOCETAXEL_2_UP
GO Biological Process (11): melanin biosynthetic process from tyrosine (GO:0006583), eye pigment biosynthetic process (GO:0006726), visual perception (GO:0007601), response to UV (GO:0009411), response to blue light (GO:0009637), response to vitamin D (GO:0033280), melanin biosynthetic process (GO:0042438), pigmentation (GO:0043473), response to cAMP (GO:0051591), developmental pigmentation (GO:0048066), eye pigmentation (GO:0048069)
GO Molecular Function (8): tyrosinase activity (GO:0004503), copper ion binding (GO:0005507), identical protein binding (GO:0042802), protein homodimerization activity (GO:0042803), monooxygenase activity (GO:0004497), protein binding (GO:0005515), oxidoreductase activity (GO:0016491), metal ion binding (GO:0046872)
GO Cellular Component (6): cytoplasm (GO:0005737), lysosome (GO:0005764), Golgi-associated vesicle (GO:0005798), melanosome membrane (GO:0033162), melanosome (GO:0042470), perinuclear region of cytoplasm (GO:0048471)
Reactome top-level categories
5 top-level categories:
| Category | Pathways |
|---|---|
| Metabolism of amino acids and derivatives | 1 |
| MITF-M-dependent gene expression | 1 |
| Metabolism | 1 |
| Developmental Biology | 1 |
| MITF-M-regulated melanocyte development | 1 |
GO top-level categories
34 GO namespaces:
| Category | Terms |
|---|---|
| pigment biosynthetic process | 2 |
| response to light stimulus | 2 |
| response to oxygen-containing compound | 2 |
| cellular anatomical structure | 2 |
| melanin biosynthetic process | 1 |
| eye pigment metabolic process | 1 |
| sensory perception of light stimulus | 1 |
| response to vitamin | 1 |
| response to lipid | 1 |
| melanin metabolic process | 1 |
| secondary metabolite biosynthetic process | 1 |
| phenol-containing compound biosynthetic process | 1 |
| biological_process | 1 |
| response to purine-containing compound | 1 |
| response to organophosphorus | 1 |
| pigmentation | 1 |
| developmental pigmentation | 1 |
| oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, another compound as one donor, and incorporation of one atom of oxygen | 1 |
| transition metal ion binding | 1 |
| protein binding | 1 |
| identical protein binding | 1 |
| protein dimerization activity | 1 |
| oxidoreductase activity | 1 |
| binding | 1 |
| catalytic activity | 1 |
| cation binding | 1 |
| intracellular anatomical structure | 1 |
| lytic vacuole | 1 |
| cytoplasmic vesicle | 1 |
| melanosome | 1 |
| chitosome | 1 |
| pigment granule membrane | 1 |
| pigment granule | 1 |
| cytoplasm | 1 |
Experimentally-supported GO annotations
GO terms backed by direct experimental evidence (ECO experimental codes) — 7 of 25 annotations. The rest are phylogenetic / computational / electronic (IEA).
7 experimentally-supported GO terms:
| GO term | NS | Evidence |
|---|---|---|
| melanin biosynthetic process | BP | direct assay |
| response to blue light | BP | direct assay |
| cytoplasm | CC | direct assay |
| perinuclear region of cytoplasm | CC | direct assay |
| copper ion binding | MF | mutant phenotype |
| identical protein binding | MF | direct assay |
| tyrosinase activity | MF | direct assay |
Protein interactions and networks
STRING
showing 15 of 2,296 interactions by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| TYR | OCA2 | Q04671 | 955 |
| TYR | MITF | O75030 | 952 |
| TYR | MC1R | Q01726 | 948 |
| TYR | PMEL | P40967 | 941 |
| TYR | SLC45A2 | Q9UMX9 | 932 |
| TYR | MLANA | Q16655 | 877 |
| TYR | SLC24A5 | Q71RS6 | 864 |
| TYR | GPR143 | P51810 | 859 |
| TYR | SOX10 | P56693 | 794 |
| TYR | ASIP | P42127 | 778 |
| TYR | POMC | P01189 | 770 |
| TYR | CTAG1A | P78358 | 748 |
| TYR | RAB38 | P57729 | 732 |
| TYR | MAGEA3 | P43357 | 717 |
| TYR | PAX3 | P23760 | 713 |
IntAct
Human interaction partners of TYR in IntAct, one row per partner (best MIscore; records = supporting IntAct interaction records).
1 partners by confidence:
| Partner | Interaction type | MIscore | Records |
|---|---|---|---|
| GPR143 | physical association | 0.520 | 4 |
BioGRID (6 interactions; top human partners by supporting records): KRAS (Synthetic Lethality), PRKD2 (Affinity Capture-MS), RAF1 (Proximity Label-MS), SYVN1 (Affinity Capture-Western)
SIGNOR signaling
showing 2 of 3 signaling interactions:
| A | Effect | B | Mechanism |
|---|---|---|---|
| MITF | “up-regulates quantity by expression” | TYR | “transcriptional regulation” |
| PRKCB | up-regulates | TYR | phosphorylation |
Protein complexes (CORUM) (3)
Experimentally-characterized complexes this protein is a subunit of (★ = the complex contains a known drug target).
3 complexes by size:
| Complex | Subunits | Members |
|---|---|---|
| ★ DCT-TYR complex | 2 | TYR, DCT |
| ★ GPR143-TYR complex | 2 | GPR143, TYR |
| ★ TYR homodimer | 1 | TYR |
Ligand–receptor pairs (CellPhoneDB) (1)
Curated ligand–receptor partners (cell-cell communication), distinct from the protein–protein interactions above.
1 ligand–receptor pairs:
| Partner | This gene’s role | Signaling class |
|---|---|---|
| GPR143 | ligand | Signaling by Serotonin/Dopamine |
Disease & clinical
Genetic variants
Variant evidence for TYR: 890 ClinVar records (245 pathogenic / likely pathogenic); 57 GWAS associations. Per-variant detail is on Sugi Variant.
ClinVar
890 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 120 |
| Likely pathogenic | 125 |
| Uncertain significance | 239 |
| Likely benign | 211 |
| Benign | 12 |
Top pathogenic / likely-pathogenic (15)
Showing the 15 best-reviewed of 245 pathogenic / likely-pathogenic ClinVar records, ranked by ClinVar review status (expert panel → multiple submitters → single submitter), then by number of submitting labs.
| Variant ID | HGVS | Classification | Review | Submitters |
|---|---|---|---|---|
| 3774 | NM_000372.5(TYR):c.1118C>A (p.Thr373Lys) | Pathogenic | criteria provided, multiple submitters, no conflicts | 30 |
| 99583 | NM_000372.5(TYR):c.832C>T (p.Arg278Ter) | Pathogenic | criteria provided, multiple submitters, no conflicts | 26 |
| 3772 | NM_000372.5(TYR):c.242C>T (p.Pro81Leu) | Pathogenic | criteria provided, multiple submitters, no conflicts | 22 |
| 3796 | NM_000372.5(TYR):c.896G>A (p.Arg299His) | Pathogenic | criteria provided, multiple submitters, no conflicts | 19 |
| 3775 | NM_000372.5(TYR):c.1147G>A (p.Asp383Asn) | Pathogenic | criteria provided, multiple submitters, no conflicts | 16 |
| 99542 | NM_000372.5(TYR):c.1204C>T (p.Arg402Ter) | Pathogenic | criteria provided, multiple submitters, no conflicts | 16 |
| 3771 | NM_000372.5(TYR):c.929dup (p.Arg311fs) | Pathogenic | criteria provided, multiple submitters, no conflicts | 14 |
| 3787 | NM_000372.5(TYR):c.732_733del (p.Cys244_Asp245delinsTer) | Pathogenic | criteria provided, multiple submitters, no conflicts | 13 |
| 3790 | NM_000372.5(TYR):c.164G>A (p.Cys55Tyr) | Pathogenic | criteria provided, multiple submitters, no conflicts | 12 |
| 99570 | NM_000372.5(TYR):c.572del (p.Gly191fs) | Pathogenic | criteria provided, multiple submitters, no conflicts | 11 |
| 3782 | NM_000372.5(TYR):c.1265G>A (p.Arg422Gln) | Pathogenic | criteria provided, multiple submitters, no conflicts | 10 |
| 3793 | NM_000372.5(TYR):c.61C>T (p.Pro21Ser) | Pathogenic | criteria provided, multiple submitters, no conflicts | 10 |
| 373911 | NM_000372.5(TYR):c.74dup (p.Ser26fs) | Pathogenic | criteria provided, multiple submitters, no conflicts | 9 |
| 99574 | NM_000372.5(TYR):c.649del (p.Arg217fs) | Pathogenic | criteria provided, multiple submitters, no conflicts | 7 |
| 379657 | NM_000372.5(TYR):c.976C>T (p.Gln326Ter) | Pathogenic | criteria provided, multiple submitters, no conflicts | 7 |
Per-variant reference — Sugi Variant
Explore TYR’s pathogenic and likely-pathogenic variants individually — each with its ClinVar classification and conditions, applied ACMG criteria (ClinGen expert panel, where curated), the calibrated in-silico predictors (AlphaMissense, REVEL, SaProt, conservation), gnomAD frequency, and the predictor-disagreement QC signal — on Sugi Variant.
SpliceAI
Top 10 splice-impact sites by Δscore (adjacent positions with the same effect merged into one range; 29 predictions of 767):
| Position(s) | Effect | Δscore | Sites |
|---|---|---|---|
| 11:89178699 | donor_gain | 1.0000 | |
| 11:89178773–89178774 | donor_loss | 0.9900 | 5 |
| 11:89227815 | acceptor_gain | 0.9900 | |
| 11:89227821–89227822 | acceptor_loss | 0.9900 | 6 |
| 11:89227971–89227972 | donor_loss | 0.9900 | 6 |
| 11:89284771–89284772 | acceptor_gain | 0.9900 | 2 |
| 11:89284771–89284772 | acceptor_loss | 0.9900 | 4 |
| 11:89191416 | donor_gain | 0.9800 | |
| 11:89227816 | acceptor_gain | 0.9800 | |
| 11:89227970 | donor_loss | 0.9800 | 2 |
AlphaMissense
988 missense substitutions predicted likely pathogenic (of 3,516 scored), across 234 residues. Top 20 hotspot residues, ranked by the number of likely-pathogenic substitutions (of those reachable by a single-nucleotide change), then by mean score:
| Residue | Likely-pathogenic substitutions | Mean am_pathogenicity | Max am_pathogenicity |
|---|---|---|---|
| D383 | 8 | 0.983 | 0.993 |
| D394 | 8 | 0.979 | 0.992 |
| H211 | 8 | 0.972 | 0.990 |
| H367 | 8 | 0.969 | 0.988 |
| H390 | 8 | 0.968 | 0.990 |
| F207 | 8 | 0.963 | 0.994 |
| H363 | 8 | 0.962 | 0.979 |
| F386 | 8 | 0.960 | 0.994 |
| H202 | 8 | 0.959 | 0.985 |
| H180 | 8 | 0.953 | 0.974 |
| F340 | 8 | 0.946 | 0.991 |
| H389 | 8 | 0.880 | 0.985 |
| D75 | 8 | 0.857 | 0.933 |
| F269 | 8 | 0.835 | 0.937 |
| H420 | 8 | 0.823 | 0.946 |
| W238 | 7 | 0.983 | 0.997 |
| W400 | 7 | 0.982 | 0.996 |
| C247 | 7 | 0.978 | 0.992 |
| C276 | 7 | 0.974 | 0.990 |
| C289 | 7 | 0.966 | 0.987 |
HPA cancer prognostics
RNA cancer specificity: Cancer enriched (Skin Cutaneous Melanoma)
Disease associations
OMIM: gene MIM:606933 | disease phenotypes: MIM:606952, MIM:203100, MIM:160700, MIM:136520
GenCC curated gene-disease
5 curated gene-disease records:
| Disease | Classification | Inheritance | Records |
|---|---|---|---|
| oculocutaneous albinism type 1A | Definitive | Autosomal recessive | 5 |
| oculocutaneous albinism type 1B | Strong | Autosomal recessive | 2 |
| minimal pigment oculocutaneous albinism type 1 | Supportive | Autosomal recessive | |
| temperature-sensitive oculocutaneous albinism type 1 | Supportive | Autosomal recessive | |
| Waardenburg syndrome type 2 | Supportive | Autosomal dominant |
ClinGen Gene-Disease Validity
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
1 validity classifications:
| Disease | Classification | Inheritance |
|---|---|---|
| oculocutaneous albinism type 1 | Definitive | AR |
Genomics England panels (PanelApp)
Clinical diagnostic gene panels including this gene (6 panels, 6 green/diagnostic-grade). Confidence: green = diagnostic, amber = moderate.
6 panels:
| Panel | Rating |
|---|---|
| Albinism or congenital nystagmus | green |
| DDG2P | green |
| Infantile nystagmus | green |
| Ocular and oculo-cutaneous albinism | green |
| Paediatric disorders | green |
| Pigmentary skin disorders | green |
Mondo (16): oculocutaneous albinism type 1B (MONDO:0011749), oculocutaneous albinism type 1A (MONDO:0008745), oculocutaneous albinism type 1 (MONDO:0018135), oculocutaneous albinism (MONDO:0018910), ocular albinism (MONDO:0017304), retinal disorder (MONDO:0005283), albinism (MONDO:0043209), strabismus (MONDO:0003432), hypopigmentation of the skin (MONDO:0019290), temperature-sensitive oculocutaneous albinism type 1 (MONDO:0018137), myopia (MONDO:0001384), pathologic nystagmus (MONDO:0004843), foveal hypoplasia (MONDO:0044203), choroidal neovascularization (MONDO:0810000), minimal pigment oculocutaneous albinism type 1 (MONDO:0018136), Waardenburg syndrome type 2 (MONDO:0019517)
Orphanet (7): Oculocutaneous albinism type 1 (Orphanet:352731), Temperature-sensitive oculocutaneous albinism type 1 (Orphanet:352737), Oculocutaneous albinism type 1B (Orphanet:79434), Oculocutaneous albinism type 1A (Orphanet:79431), Oculocutaneous albinism (Orphanet:55), Ocular albinism (Orphanet:284804), Hypopigmentation of the skin (Orphanet:79376)
HPO phenotypes
42 phenotypes (HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000077 | Abnormality of the kidney |
| HP:0000365 | Hearing impairment |
| HP:0000407 | Sensorineural hearing impairment |
| HP:0000483 | Astigmatism |
| HP:0000486 | Strabismus |
| HP:0000505 | Visual impairment |
| HP:0000506 | Telecanthus |
| HP:0000508 | Ptosis |
| HP:0000539 | Abnormality of refraction |
| HP:0000545 | Myopia |
| HP:0000577 | Exotropia |
| HP:0000587 | Abnormal optic nerve morphology |
| HP:0000613 | Photophobia |
| HP:0000635 | Blue irides |
| HP:0000639 | Nystagmus |
| HP:0000649 | Abnormality of visual evoked potentials |
| HP:0000962 | Hyperkeratosis |
| HP:0000995 | Melanocytic nevus |
| HP:0001010 | Hypopigmentation of the skin |
| HP:0001022 | Albinism |
| HP:0001053 | Hypopigmented skin patches |
| HP:0001072 | Thickened skin |
| HP:0001100 | Heterochromia iridis |
| HP:0001107 | Ocular albinism |
| HP:0001480 | Freckling |
| HP:0002211 | White forelock |
| HP:0002216 | Premature graying of hair |
| HP:0002251 | Aganglionic megacolon |
| HP:0002671 | Basal cell carcinoma |
| HP:0002861 | Melanoma |
| HP:0003577 | Congenital onset |
| HP:0004414 | Abnormality of the pulmonary artery |
| HP:0005599 | Hypopigmentation of hair |
| HP:0006739 | Squamous cell carcinoma of the skin |
| HP:0007663 | Reduced visual acuity |
| HP:0007703 | Abnormal retinal pigmentation |
| HP:0007730 | Iris hypopigmentation |
| HP:0007750 | Hypoplasia of the fovea |
| HP:0007894 | Fundus hypopigmentation |
| HP:0011364 | White hair |
| HP:0200098 | Absent skin pigmentation |
GWAS associations
showing 30 of 57 associations:
| Study | Trait | p-value |
|---|---|---|
| GCST006988_134 | Blond vs. brown/black hair color | 2e-200 |
| GCST010302_7 | Cutaneous melanoma or hair colour | 4e-199 |
| GCST005897_16 | Low tan response | 2e-172 |
| GCST006075_14 | Hair color | 1e-100 |
| GCST006988_23 | Blond vs. brown/black hair color | 3e-71 |
| GCST010304_16 | Cutaneous malignant melanoma | 4e-70 |
| GCST008870_16 | Keratinocyte cancer (MTAG) | 9e-62 |
| GCST006988_153 | Blond vs. brown/black hair color | 8e-59 |
| GCST008871_49 | Basal cell carcinoma | 7e-51 |
| GCST010303_5 | Nevus count or cutaneous melanoma | 1e-48 |
| GCST004785_55 | Vitiligo | 1e-43 |
| GCST010148_16 | Cutaneous squamous cell carcinoma | 2e-38 |
| GCST90013410_24 | Basal cell carcinoma | 5e-33 |
| GCST006989_35 | Brown vs. black hair color | 2e-27 |
| GCST006989_36 | Brown vs. black hair color | 5e-24 |
| GCST008872_17 | Squamous cell carcinoma | 2e-23 |
| GCST012442_29 | Age-related hearing impairment | 2e-21 |
| GCST001939_2 | Tanning | 5e-21 |
| GCST003327_3 | Squamous cell carcinoma | 2e-20 |
| GCST003726_9 | Basal cell carcinoma | 3e-19 |
| GCST000662_3 | Vitiligo | 2e-18 |
| GCST000710_4 | Eye color | 1e-15 |
| GCST006976_93 | Macular thickness | 1e-15 |
| GCST000437_5 | Melanoma | 2e-14 |
| GCST003655_4 | Cutaneous squamous cell carcinoma | 3e-14 |
| GCST000371_7 | Tanning | 2e-13 |
| GCST001267_8 | Melanoma | 2e-13 |
| GCST001509_14 | Vitiligo | 2e-13 |
| GCST004142_3 | Melanoma | 4e-13 |
| GCST007451_6 | Skin, hair and eye pigmentation (multivariate analysis) | 7e-13 |
EFO canonical traits (from GWAS)
14 canonical traits:
| EFO ID | Trait name |
|---|---|
| EFO:0003949 | eye color |
| EFO:0003963 | freckles |
| EFO:0004279 | suntan |
| EFO:1001927 | cutaneous squamous cell carcinoma |
| EFO:0004695 | intraocular pressure measurement |
| EFO:0009260 | non-melanoma skin carcinoma |
| EFO:0007660 | neuroticism measurement |
| EFO:0003924 | hair color |
| EFO:0009764 | eye colour measurement |
| EFO:0004632 | nevus count |
| EFO:0010176 | keratinocyte carcinoma |
| EFO:0008111 | diet measurement |
| EFO:0007796 | parental longevity |
| EFO:0009762 | healthspan |
MeSH disease descriptors
12 disease descriptors:
| Descriptor | Name | Tree numbers |
|---|---|---|
| D000417 | Albinism | C11.270.040; C16.320.290.040; C16.320.565.100.102; C16.320.850.080; C17.800.621.440.102; C17.800.827.080; C18.452.648.100.102 |
| D016117 | Albinism, Ocular | C11.270.040.090; C16.320.290.040.090; C16.320.565.100.102.090; C16.320.850.080.090; C17.800.621.440.102.090; C17.800.827.080.090; C18.452.648.100.102.090 |
| D016115 | Albinism, Oculocutaneous | C11.270.040.545; C16.320.290.040.100; C16.320.565.100.102.100; C16.320.850.080.100; C17.800.621.440.102.100; C17.800.827.080.100; C18.452.648.100.102.100 |
| D020256 | Choroidal Neovascularization | C11.941.160.244; C23.550.589.500.145 |
| D017496 | Hypopigmentation | C17.800.621.440 |
| D009216 | Myopia | C11.744.636 |
| D009759 | Nystagmus, Pathologic | C10.292.562.675; C11.590.400 |
| D012164 | Retinal Diseases | C11.768 |
| D013285 | Strabismus | C10.292.562.887; C11.590.810 |
| C537728 | Oculocutaneous albinism type 1 *(supp.)* | |
| C537729 | Oculocutaneous albinism type 1B *(supp.)* | |
| C536463 | Waardenburg syndrome type 2 *(supp.)* |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (2): CHEMBL1973 (SINGLE PROTEIN), CHEMBL6177911 (PROTEIN-PROTEIN INTERACTION)
Drugs by curated mechanism of action (ChEMBL)
Drugs whose curated ChEMBL mechanism of action targets the TYR protein itself — single-protein targets only (drugs acting on a protein family or complex that merely includes it are excluded). Includes antibodies and oligonucleotides that bioactivity screening does not capture.
3 curated-mechanism drugs:
| Drug | Modality | Max phase |
|---|---|---|
| MEQUINOL | Small molecule | 4 |
| MONOBENZONE | Small molecule | 4 |
| ARBUTIN | Small molecule | 2 |
Molecules with ChEMBL bioactivity
Phase ≥1, by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 1,937,948 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
10 molecules by phase:
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL196 | ASCORBIC ACID | 4 | 1,043,187 |
| CHEMBL443605 | HEXYLRESORCINOL | 4 | 10,814 |
| CHEMBL537 | HYDROQUINONE | 4 | 297,955 |
| CHEMBL140 | CURCUMIN | 3 | 95,185 |
| CHEMBL50 | QUERCETIN | 3 | 75,572 |
| CHEMBL165 | RESVERATROL | 3 | 61,047 |
| CHEMBL232202 | ARBUTIN | 2 | 32,147 |
| CHEMBL146 | BUTYLATED HYDROXYTOLUENE | 2 | 271,950 |
| CHEMBL151 | LUTEOLIN | 2 | 23,845 |
| CHEMBL150 | KAEMPFEROL | 1 | 26,246 |
PharmGKB: 1 entry (CPIC guideline: no)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: enzyme — Oxidoreductases
Most potent curated ligand interactions (2 total), top 2:
| Ligand | Action | Affinity | Parameter |
|---|---|---|---|
| neorauflavane | Inhibition | 7.52 | pIC50 |
| compound 7 [PMID: 21334791] | Inhibition | 6.43 | pIC50 |
Binding affinities (BindingDB)
191 measured of 241 human assays (328 total across all organisms); most potent 50 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value |
|---|---|---|
| CHEMBL2079256 | KI | 0.8 nM |
| NSC_6054 | KI | 8 nM |
| CHEMBL5594635 | IC50 | 16 nM |
| CHEMBL5592150 | IC50 | 16 nM |
| CHEMBL5591296 | IC50 | 16 nM |
| (S)-2-(5-Hydroxy-4-oxo-4H-pyran-2-ylmethoxycarbonylamino)-3-phenyl-propionic acid 5-hydroxy-4-oxo-4H-pyran-2-ylmethyl ester | IC50 | 60 nM |
| p-Coumaric Acid | IC50 | 140 nM |
| CHEBI:69084 | IC50 | 154 nM |
| CHEMBL4239110 | IC50 | 170 nM |
| CHEBI:69089 | IC50 | 177 nM |
| 3-Methoxy-xanthen-9-one | IC50 | 180 nM |
| CHEMBL5555785 | IC50 | 220 nM |
| CHEMBL5542638 | IC50 | 220 nM |
| CHEMBL5542520 | IC50 | 220 nM |
| CHEMBL5559732 | IC50 | 220 nM |
| (S)-2-[(S)-2-[(S)-2-(5-Hydroxy-4-oxo-4H-pyran-2-ylmethoxycarbonylamino)-1-oxo-3-phenyl-propylamino]-3-(1H-indol-3-yl)-propionylamino]-3-(4-hydroxy-phenyl)-propionic acid | IC50 | 240 nM |
| (1E,4E)-1,5-Bis-(4-hydroxy-3-methoxy-phenyl)-penta-1,4-dien-3-one | IC50 | 257 nM |
| 1-Hydroxyxanthone | IC50 | 310 nM |
| (S)-2-{(S)-2-[(S)-2-(5-Hydroxy-4-oxo-4H-pyran-2-ylmethoxycarbonylamino)-1-oxo-3-phenyl-propylamino]-3-phenyl-propionylamino}-3-(4-hydroxy-phenyl)-propionic acid | IC50 | 330 nM |
| (S)-2-[(S)-2-[(S)-2-(5-Hydroxy-4-oxo-4H-pyran-2-ylmethoxycarbonylamino)-1-oxo-3-phenyl-propylamino]-3-(4-hydroxy-phenyl)-propionylamino]-3-(4-hydroxy-phenyl)-propionic acid | IC50 | 390 nM |
| (1E,4E)-1,5-bis(4-fluorophenyl)penta-1,4-dien-3-one | IC50 | 507 nM |
| 9-oxoxanthene | IC50 | 623 nM |
| (+)-Anymol | IC50 | 635 nM |
| 4-(beta-D-Cellobiopyranosyl)-2,2’,4’-trihydroxybibenzyl | IC50 | 680 nM |
| CHEMBL1794031 | IC50 | 700 nM |
| 4-(beta-D-Glucopyranosyl)-2,2’,4’-trihydroxybibenzyl | IC50 | 770 nM |
| (2S)-2-[(2S)-2-[(2S)-2-({[(5-hydroxy-4-oxo-4H-pyran-2-yl)methoxy]carbonyl}amino)-3-(1H-indol-3-yl)propanamido]-3-(1H-indol-3-yl)propanamido]-3-(4-hydroxyphenyl)propanoic acid | IC50 | 780 nM |
| Methyl 3-(4-Hydroxyphenyl)Acrylate | KI | 780 nM |
| 2,2’,4’-Trihydroxy-4-(beta-D-maltopyranosyl)bibenzyl | IC50 | 830 nM |
| 1-Methoxy-xanthen-9-one | IC50 | 900 nM |
| 4-[2-(2-pyrimidinylamino)-4-thiazolyl]benzene-1,3-diol | EC50 | 945 nM |
| CHEMBL4473314 | IC50 | 1000 nM |
| SUBAMOLIDE A | IC50 | 1000 nM |
| cid_5280863 | IC50 | 1050 nM |
| CHEMBL2078992 | IC50 | 1070 nM |
| 3-Hydroxy-xanthen-9-one | IC50 | 1100 nM |
| CHEMBL5436579 | IC50 | 1100 nM |
| 4-Hydroxy-xanthen-9-one | IC50 | 1300 nM |
| 2-(3,4-Dihydroxy-phenyl)-5,7-dihydroxy-3-((2S,4R,5R)-3,4,5-trihydroxy-6-hydroxymethyl-tetrahydro-pyran-2-yloxy)-chromen-4-one | IC50 | 1320 nM |
| CHEMBL4763438 | IC50 | 1400 nM |
| trans-2,4,3’,5’-tetramethoxystilbene | IC50 | 1500 nM |
| CHEMBL5399906 | IC50 | 1570 nM |
| CHEMBL4792744 | IC50 | 1600 nM |
| CHEMBL3618459 | IC50 | 1780 nM |
| CHEMBL4760852 | IC50 | 1900 nM |
| 2,6-bis(4-hydroxybenzylidene)cyclohexanone | IC50 | 1940 nM |
| CHEMBL3618460 | IC50 | 1980 nM |
| (S)-2-(5-Hydroxy-4-oxo-4H-pyran-2-ylmethoxycarbonylamino)-4-methyl-pentanoic acid 5-hydroxy-4-oxo-4H-pyran-2-ylmethyl ester | IC50 | 2000 nM |
| CHEMBL4762659 | IC50 | 2000 nM |
| CHEMBL4745622 | IC50 | 2000 nM |
ChEMBL bioactivities
173 potent at pChembl≥5 of 295 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 7.80 | IC50 | 16 | nM | CHEMBL5594635 |
| 7.80 | IC50 | 16 | nM | CHEMBL5592150 |
| 7.80 | IC50 | 16 | nM | CHEMBL5591296 |
| 7.64 | IC50 | 23 | nM | NORARTOCARPETIN |
| 7.22 | IC50 | 60 | nM | CHEMBL24152 |
| 7.16 | IC50 | 70 | nM | CHEMBL394855 |
| 7.10 | IC50 | 80 | nM | MORACHALCONE A |
| 7.05 | IC50 | 90 | nM | GLABRIDIN |
| 7.05 | IC50 | 90 | nM | OXYRESVERATROL |
| 6.92 | IC50 | 120 | nM | BUTYLATED HYDROXYTOLUENE |
| 6.85 | IC50 | 140 | nM | CHEMBL5562348 |
| 6.82 | IC50 | 150 | nM | CHEMBL5558420 |
| 6.81 | IC50 | 154 | nM | GLYASPERIN D |
| 6.77 | IC50 | 170 | nM | CHEMBL4239110 |
| 6.77 | IC50 | 170 | nM | CHEMBL4743159 |
| 6.75 | IC50 | 177 | nM | GLYASPERIN C |
| 6.75 | IC50 | 180 | nM | CHEMBL5555033 |
| 6.66 | IC50 | 220 | nM | CHEMBL5555785 |
| 6.66 | IC50 | 220 | nM | CHEMBL5542638 |
| 6.66 | IC50 | 220 | nM | CHEMBL5542520 |
| 6.66 | IC50 | 220 | nM | CHEMBL5559732 |
| 6.62 | IC50 | 240 | nM | CHEMBL317040 |
| 6.60 | Ki | 250 | nM | CHEMBL4743159 |
| 6.60 | Ki | 250 | nM | CHEMBL5408197 |
| 6.48 | IC50 | 330 | nM | CHEMBL98925 |
| 6.46 | Ki | 350 | nM | CHEMBL3978212 |
| 6.46 | IC50 | 350 | nM | CHEMBL5566780 |
| 6.43 | IC50 | 370 | nM | CHEMBL499124 |
| 6.41 | IC50 | 390 | nM | CHEMBL98924 |
| 6.37 | IC50 | 430 | nM | CHEMBL491410 |
| 6.26 | Ki | 550 | nM | CHEMBL5399906 |
| 6.25 | IC50 | 560 | nM | HEXYLRESORCINOL |
| 6.17 | IC50 | 680 | nM | CHEMBL1760463 |
| 6.16 | IC50 | 700 | nM | CHEMBL1794031 |
| 6.14 | IC50 | 720 | nM | CHEMBL5556099 |
| 6.14 | IC50 | 730 | nM | CHEMBL489989 |
| 6.11 | IC50 | 780 | nM | CHEMBL430491 |
| 6.11 | IC50 | 770 | nM | CHEMBL1760462 |
| 6.08 | IC50 | 830 | nM | CHEMBL1760464 |
| 6.07 | IC50 | 850 | nM | CHEMBL5557086 |
| 6.05 | IC50 | 900 | nM | CHEMBL4743159 |
| 6.05 | IC50 | 890 | nM | CHEMBL5557324 |
| 6.04 | Ki | 920 | nM | CHEMBL4743159 |
| 6.01 | IC50 | 980 | nM | CHEMBL458395 |
| 6.00 | IC50 | 1000 | nM | KAEMPFEROL |
| 6.00 | IC50 | 1000 | nM | CHEMBL4473314 |
| 6.00 | IC50 | 1000 | nM | SUBAMOLIDE A |
| 5.99 | Ki | 1020 | nM | CHEMBL5632644 |
| 5.97 | IC50 | 1070 | nM | CHEMBL2078992 |
| 5.96 | IC50 | 1100 | nM | CHEMBL4743159 |
PubChem BioAssay actives
171 with measured affinity, of 881 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| [2-(2-methyl-5-propan-2-ylphenoxy)-2-oxoethyl] 3,5-dihydroxybenzoate | 2112482: Inhibition of tyrosinase (unknown origin) | ic50 | 0.0160 | uM |
| [2-(2-methyl-5-propan-2-ylphenoxy)-2-oxoethyl] 3,4,5-trihydroxybenzoate | 2112482: Inhibition of tyrosinase (unknown origin) | ic50 | 0.0160 | uM |
| [2-(2-methyl-5-propan-2-ylphenoxy)-2-oxoethyl] (E)-3-(2,4-dihydroxyphenyl)prop-2-enoate | 2112482: Inhibition of tyrosinase (unknown origin) | ic50 | 0.0160 | uM |
| 2-(2,4-dihydroxyphenyl)-5,7-dihydroxychromen-4-one | 1504875: Inhibition of tyrosinase (unknown origin) using L-dihydroxyphenylalanine as substrate preincubated for 30 mins followed by substrate addition measured for 7 mins by spectrophotometric analysis | ic50 | 0.0230 | uM |
| (E)-1,3-bis(2,4-dihydroxyphenyl)prop-2-en-1-one | 1611934: Inhibition of tyrosinase (unknown origin) | ic50 | 0.0700 | uM |
| (E)-1-[2,4-dihydroxy-3-(3-methylbut-2-enyl)phenyl]-3-(2,4-dihydroxyphenyl)prop-2-en-1-one | 1611934: Inhibition of tyrosinase (unknown origin) | ic50 | 0.0800 | uM |
| 4-[(3R)-8,8-dimethyl-3,4-dihydro-2H-pyrano[2,3-f]chromen-3-yl]benzene-1,3-diol | 1484036: Inhibition of tyrosinase (unknown origin) using L-tyrosine as substrate preincubated for 5 mins followed by substrate addition | ic50 | 0.0900 | uM |
| 4-[(E)-2-(3,5-dihydroxyphenyl)ethenyl]benzene-1,3-diol | 1717732: Inhibition of human tyrosinase expressed in HEK293 cells using L-tyrosine and DOPA as substrate | ic50 | 0.0900 | uM |
| butylated hydroxytoluene | 2112482: Inhibition of tyrosinase (unknown origin) | ic50 | 0.1200 | uM |
| N-[(2E)-2-[(2,4-dihydroxyphenyl)methylidene]-1-oxo-3H-inden-4-yl]acetamide | 2067611: Inhibition of tyrosinase in human MNT-1 cells using L-DOPA as substrate preincubated for 10 mins followed by substrate addition measured after 180 mins by absorbance based spectramax microplate reader assay | ic50 | 0.1400 | uM |
| N-[(2E)-2-[(2,4-dihydroxyphenyl)methylidene]-1-oxo-3H-inden-4-yl]propanamide | 2067611: Inhibition of tyrosinase in human MNT-1 cells using L-DOPA as substrate preincubated for 10 mins followed by substrate addition measured after 180 mins by absorbance based spectramax microplate reader assay | ic50 | 0.1500 | uM |
| 4-[(3R)-5,7-dimethoxy-6-(3-methylbut-2-enyl)-3,4-dihydro-2H-chromen-3-yl]benzene-1,3-diol | 1301471: Inhibition of tyrosinase (unknown origin) using L-tyrosine as substrate assessed as oxidation of L-tyrosine after 15 mins | ic50 | 0.1540 | uM |
| (E)-1-[2,4-dihydroxy-3-[(E)-4-hydroxy-3-methylbut-2-enyl]phenyl]-3-(2,4-dihydroxyphenyl)prop-2-en-1-one | 1611934: Inhibition of tyrosinase (unknown origin) | ic50 | 0.1700 | uM |
| N-[4-(2,4-dihydroxyphenyl)-1,3-thiazol-2-yl]-2-methylpropanamide | 2067611: Inhibition of tyrosinase in human MNT-1 cells using L-DOPA as substrate preincubated for 10 mins followed by substrate addition measured after 180 mins by absorbance based spectramax microplate reader assay | ic50 | 0.1700 | uM |
| 4-[(3R)-7-hydroxy-5-methoxy-6-(3-methylbut-2-enyl)-3,4-dihydro-2H-chromen-3-yl]benzene-1,3-diol | 1301471: Inhibition of tyrosinase (unknown origin) using L-tyrosine as substrate assessed as oxidation of L-tyrosine after 15 mins | ic50 | 0.1770 | uM |
| N-[(2E)-2-[(2,4-dihydroxyphenyl)methylidene]-1-oxo-3H-inden-4-yl]butanamide | 2067611: Inhibition of tyrosinase in human MNT-1 cells using L-DOPA as substrate preincubated for 10 mins followed by substrate addition measured after 180 mins by absorbance based spectramax microplate reader assay | ic50 | 0.1800 | uM |
| [(E)-[4-[[1-[(3,4-dichlorophenyl)methyl]triazol-4-yl]methoxy]phenyl]methylideneamino]thiourea | 2078306: Competitive inhibition of His-tagged human tyrosinase expressed in HEK293 cells | ic50 | 0.2200 | uM |
| [(E)-[4-[[1-[(4-fluorophenyl)methyl]triazol-4-yl]methoxy]phenyl]methylideneamino]thiourea | 2078306: Competitive inhibition of His-tagged human tyrosinase expressed in HEK293 cells | ic50 | 0.2200 | uM |
| [(E)-[4-[[1-[(3-methylphenyl)methyl]triazol-4-yl]methoxy]phenyl]methylideneamino]thiourea | 2078306: Competitive inhibition of His-tagged human tyrosinase expressed in HEK293 cells | ic50 | 0.2200 | uM |
| [(E)-[4-[[1-[(4-methylphenyl)methyl]triazol-4-yl]methoxy]phenyl]methylideneamino]thiourea | 2078306: Competitive inhibition of His-tagged human tyrosinase expressed in HEK293 cells | ic50 | 0.2200 | uM |
| (2S)-2-[[(2S)-2-[[(2S)-2-[(5-hydroxy-4-oxopyran-2-yl)methoxycarbonylamino]-3-phenylpropanoyl]amino]-3-(1H-indol-3-yl)propanoyl]amino]-3-(4-hydroxyphenyl)propanoic acid | 215966: Inhibitory activity against mushroom tyrosinase | ic50 | 0.2400 | uM |
| (2E)-2-[(2,4-dihydroxyphenyl)methylidene]-4-hydroxy-3H-inden-1-one | 2002044: Inhibition of C-terminal His-tagged truncated form of human tyrosinase (1 to 456 residues) expressed in HEK293T cells using L-DOPA as substrate assessed as inhibition constant incubated for 1 hr by microplate reader analysis | ki | 0.2500 | uM |
| (2S)-2-[[(2S)-2-[[(2S)-2-[(5-hydroxy-4-oxopyran-2-yl)methoxycarbonylamino]-3-phenylpropanoyl]amino]-3-phenylpropanoyl]amino]-3-(4-hydroxyphenyl)propanoic acid | 215966: Inhibitory activity against mushroom tyrosinase | ic50 | 0.3300 | uM |
| N-[(2E)-2-[(2,4-dihydroxyphenyl)methylidene]-1-oxo-3H-inden-4-yl]-2-methylpropanamide | 2067611: Inhibition of tyrosinase in human MNT-1 cells using L-DOPA as substrate preincubated for 10 mins followed by substrate addition measured after 180 mins by absorbance based spectramax microplate reader assay | ic50 | 0.3500 | uM |
| 1-hydroxy-5-[(Z)-(6-hydroxy-3-oxo-1-benzofuran-2-ylidene)methyl]pyridin-2-one | 1331359: Inhibition of recombinant human tyrosinase expressed in baculovirus infected Sf9 cells assessed as diphenolase activity using L-DOPA as substrate by UV-vis spectrophotometry | ki | 0.3500 | uM |
| 4-[2-(2,4-dihydroxyphenyl)ethyl]benzene-1,3-diol | 590115: Inhibition of Tyrosinase | ic50 | 0.3700 | uM |
| (2S)-2-[[(2S)-2-[[(2S)-2-[(5-hydroxy-4-oxopyran-2-yl)methoxycarbonylamino]-3-phenylpropanoyl]amino]-3-(4-hydroxyphenyl)propanoyl]amino]-3-(4-hydroxyphenyl)propanoic acid | 215966: Inhibitory activity against mushroom tyrosinase | ic50 | 0.3900 | uM |
| (2S,3R,4S,5R)-2-[4-[2-(2,4-dihydroxyphenyl)ethyl]-3-hydroxyphenoxy]oxane-3,4,5-triol | 590115: Inhibition of Tyrosinase | ic50 | 0.4300 | uM |
| (2Z)-2-[(2,4-dihydroxyphenyl)methylidene]-7-hydroxy-1-benzofuran-3-one | 2002044: Inhibition of C-terminal His-tagged truncated form of human tyrosinase (1 to 456 residues) expressed in HEK293T cells using L-DOPA as substrate assessed as inhibition constant incubated for 1 hr by microplate reader analysis | ki | 0.5500 | uM |
| Hexylresorcinol | 1248348: Inhibition of tyrosinase (unknown origin) using L-DOPA as substrate assessed as formation of dopachrome by spectrophotometric analysis | ic50 | 0.5600 | uM |
| (2S,3R,4S,5S,6R)-2-[(2R,3S,4R,5R,6S)-6-[4-[2-(2,4-dihydroxyphenyl)ethyl]-3-hydroxyphenoxy]-4,5-dihydroxy-2-(hydroxymethyl)oxan-3-yl]oxy-6-(hydroxymethyl)oxane-3,4,5-triol | 590115: Inhibition of Tyrosinase | ic50 | 0.6800 | uM |
| (2E)-4-amino-2-[(2,4-dihydroxyphenyl)methylidene]-3H-inden-1-one | 2067611: Inhibition of tyrosinase in human MNT-1 cells using L-DOPA as substrate preincubated for 10 mins followed by substrate addition measured after 180 mins by absorbance based spectramax microplate reader assay | ic50 | 0.7200 | uM |
| (2S,3R,4S,5R)-2-[4-[2-(2,4-dihydroxyphenyl)ethyl]-3-[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxyphenoxy]oxane-3,4,5-triol | 590115: Inhibition of Tyrosinase | ic50 | 0.7300 | uM |
| (2S,3R,4S,5S,6R)-2-[4-[2-(2,4-dihydroxyphenyl)ethyl]-3-hydroxyphenoxy]-6-(hydroxymethyl)oxane-3,4,5-triol | 590115: Inhibition of Tyrosinase | ic50 | 0.7700 | uM |
| (2S)-2-[[(2S)-2-[[(2S)-2-[(5-hydroxy-4-oxopyran-2-yl)methoxycarbonylamino]-3-(1H-indol-3-yl)propanoyl]amino]-3-(1H-indol-3-yl)propanoyl]amino]-3-(4-hydroxyphenyl)propanoic acid | 215966: Inhibitory activity against mushroom tyrosinase | ic50 | 0.7800 | uM |
| (2R,3R,4S,5S,6R)-2-[(2R,3S,4R,5R,6S)-6-[4-[2-(2,4-dihydroxyphenyl)ethyl]-3-hydroxyphenoxy]-4,5-dihydroxy-2-(hydroxymethyl)oxan-3-yl]oxy-6-(hydroxymethyl)oxane-3,4,5-triol | 590115: Inhibition of Tyrosinase | ic50 | 0.8300 | uM |
| (2S)-2-amino-N-[(2E)-2-[(2,4-dihydroxyphenyl)methylidene]-1-oxo-3H-inden-4-yl]propanamide | 2067611: Inhibition of tyrosinase in human MNT-1 cells using L-DOPA as substrate preincubated for 10 mins followed by substrate addition measured after 180 mins by absorbance based spectramax microplate reader assay | ic50 | 0.8500 | uM |
| (2E)-2-[(2,4-dihydroxyphenyl)methylidene]-4-(methylamino)-3H-inden-1-one | 2067611: Inhibition of tyrosinase in human MNT-1 cells using L-DOPA as substrate preincubated for 10 mins followed by substrate addition measured after 180 mins by absorbance based spectramax microplate reader assay | ic50 | 0.8900 | uM |
| (2S)-2-(2,4-dihydroxyphenyl)-5,7-dihydroxy-2,3-dihydrochromen-4-one | 1611934: Inhibition of tyrosinase (unknown origin) | ic50 | 0.9800 | uM |
| (3Z,4R,5R)-4-hydroxy-5-methoxy-5-methyl-3-tetradecylideneoxolan-2-one | 1717710: Inhibition of tyrosinase in human neonatal foreskin epidermal melanocyte cells using L-tyrosine and L-DOPA as substrate preincubated for 2 days followed by cell lysis and subsequent substrate addition and measured after 3 hr by spectrophotometric method | ic50 | 1.0000 | uM |
| 3,5,7-trihydroxy-2-(4-hydroxyphenyl)chromen-4-one | 1301471: Inhibition of tyrosinase (unknown origin) using L-tyrosine as substrate assessed as oxidation of L-tyrosine after 15 mins | ic50 | 1.0000 | uM |
| (3Z,4R)-4-hydroxy-5-methylidene-3-tetradecylideneoxolan-2-one | 1717710: Inhibition of tyrosinase in human neonatal foreskin epidermal melanocyte cells using L-tyrosine and L-DOPA as substrate preincubated for 2 days followed by cell lysis and subsequent substrate addition and measured after 3 hr by spectrophotometric method | ic50 | 1.0000 | uM |
| [4-(4-hydroxyphenyl)piperazin-1-yl]-(2-methoxyphenyl)methanone | 2138731: Binding affinity to human tyrosinase using l-DOPA as substrate assessed as inhibition constant by Michaelis-Menten plot analysis | ki | 1.0200 | uM |
| methyl 2-[3-[4-[4-(2-methoxyphenyl)piperazin-1-yl]butyl]-2,5-dioxo-4,4-diphenylimidazolidin-1-yl]acetate | 1653002: Inhibition of tyrosinase (unknown origin) | ic50 | 1.0700 | uM |
| 4-[2-(propan-2-ylamino)-1,3-thiazol-4-yl]benzene-1,3-diol | 1978470: Inhibition of human tyrosinase using L-DOPA as substrate incubated for 10 to 20 mins by MBTH dye based assay | ic50 | 1.1000 | uM |
| 2-hydroxy-5-propan-2-ylcyclohepta-2,4,6-trien-1-one | 1167965: Competitive inhibition of tyrosinase in human G-361 cells incubated for 10 mins measured for 2 hrs by MBTH-based spectrophotometry | ic50 | 1.1500 | uM |
| N-[4-(2,4-dihydroxyphenyl)-1,3-thiazol-2-yl]-2,2-dimethylpropanamide | 1717730: Inhibition of human tyrosinase using L- DOPA as substrate by MBTH based assay | ic50 | 1.4000 | uM |
| (2S,3R,4S,5S,6R)-2-[(2R,3S,4R,5R,6R)-6-[(2R)-4-(2,4-dihydroxyphenyl)butan-2-yl]oxy-4,5-dihydroxy-2-(hydroxymethyl)oxan-3-yl]oxy-6-(hydroxymethyl)oxane-3,4,5-triol | 1248348: Inhibition of tyrosinase (unknown origin) using L-DOPA as substrate assessed as formation of dopachrome by spectrophotometric analysis | ic50 | 1.5100 | uM |
| 4-[2-(3,5-dihydroxyphenyl)ethyl]benzene-1,3-diol | 276018: Inhibition of tyrosinase | ic50 | 1.6000 | uM |
| (2S,3R,4S,5R)-2-[2-[2-(2,4-dihydroxyphenyl)ethyl]-5-hydroxyphenoxy]oxane-3,4,5-triol | 590115: Inhibition of Tyrosinase | ic50 | 1.6000 | uM |
CTD chemical–gene interactions
67 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Colforsin | decreases expression, increases activity, increases expression, decreases reaction, affects cotreatment (+1 more) | 4 |
| Melanins | increases oxidation, increases reaction, affects cotreatment, decreases expression, increases abundance (+4 more) | 4 |
| Plant Extracts | decreases expression, decreases activity, affects cotreatment | 3 |
| Quercetin | increases response to substance, decreases reaction, increases activity, affects activity, affects expression (+1 more) | 3 |
| 5,7-dimethoxycoumarin | affects cotreatment, increases activity, increases expression | 2 |
| caffeic acid phenethyl ester | affects response to substance, affects abundance, increases metabolic processing, increases response to substance, decreases reaction (+1 more) | 2 |
| 2-(2-amino-3-methoxyphenyl)-4H-1-benzopyran-4-one | increases activity, increases expression, decreases expression, decreases reaction | 2 |
| Resveratrol | affects cotreatment, decreases expression, affects localization, decreases activity | 2 |
| Copper | affects cotreatment, decreases reaction, increases expression, increases abundance, increases chemical synthesis (+2 more) | 2 |
| Valproic Acid | affects cotreatment, increases activity, increases expression | 2 |
| bisphenol F | affects cotreatment, decreases methylation | 1 |
| 3,4-dihydroxyphenylpropionic acid | increases oxidation, decreases abundance | 1 |
| ferulic acid | increases oxidation, decreases abundance | 1 |
| beta-ionone | increases expression | 1 |
| amentoflavone | decreases activity | 1 |
| kojic acid | increases expression | 1 |
| ethyl-p-hydroxybenzoate | affects response to substance | 1 |
| 4-hydroxy-2-nonenal | decreases expression | 1 |
| bathocuproine sulfonate | decreases reaction, increases activity | 1 |
| cinnamic acid | increases oxidation, decreases abundance | 1 |
| cupric chloride | increases activity, decreases reaction | 1 |
| ethylenediamine | decreases reaction, increases oxidation | 1 |
| resorcinol | decreases activity | 1 |
| 9-cis-retinal | increases expression, decreases reaction | 1 |
| hydroquinone | increases expression | 1 |
| 3-phenylpropionic acid | decreases abundance, increases oxidation | 1 |
| caffeic acid | decreases abundance, increases oxidation | 1 |
| artemisic acid | decreases expression | 1 |
| N-(2-(4-bromocinnamylamino)ethyl)-5-isoquinolinesulfonamide | decreases activity | 1 |
| 2-(4-morpholinyl)-8-phenyl-4H-1-benzopyran-4-one | affects cotreatment, decreases expression | 1 |
ChEMBL screening assays
211 unique, capped per target: 209 binding, 2 admet
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1013463 | Binding | Inhibition of tyrosinase at 5 uM | Synthesis and in vitro biological activity of retinyl polyhydroxybenzoates, novel hybrid retinoid derivatives. — *Bioorg Med Chem Lett* |
| CHEMBL4010827 | ADMET | Drug metabolism assessed as tyrosinase (unknown origin)-mediated redox transformation by measuring sonnerphenolic C formation at 10 mM in presence of vitamin C by HPLC analysis | Chemical synthesis, redox transformation, and identification of sonnerphenolic C, an antioxidant in Acer nikoense. — *Bioorg Med Chem Lett* |
Cellosaurus cell lines
15 cell lines: 7 induced pluripotent stem cell, 4 embryonic stem cell, 4 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_A4GS | chHES-478 | Embryonic stem cell | Female |
| CVCL_A7R2 | SEES3-1V human TYR, clone1 | Embryonic stem cell | Male |
| CVCL_A7R3 | SEES3-1V human TYR, clone2 | Embryonic stem cell | Male |
| CVCL_A7R4 | SEES3-1V human TYR, clone3 | Embryonic stem cell | Male |
| CVCL_AM55 | GM11292 | Transformed cell line | Female |
| CVCL_AM58 | GM11296 | Transformed cell line | Male |
| CVCL_AM59 | GM11297 | Transformed cell line | Male |
| CVCL_AM60 | GM11345 | Transformed cell line | Female |
| CVCL_C1XT | WTSIi253-A-2 | Induced pluripotent stem cell | Male |
| CVCL_D3BH | Tyr1 | Induced pluripotent stem cell |
Clinical trials (associated diseases)
Via MONDO — disease-level, not drug-specific.
showing 60 of 299 trials:
| NCT | Phase | Status | Title |
|---|---|---|---|
| NCT01955135 | Phase 4 | COMPLETED | Anesthesia for Retinopathy of Prematurity |
| NCT07685886 | Phase 4 | NOT_YET_RECRUITING | MIRACLE-T2D Montelukast Intervention for Renal, Cardiovascular and Eye Health in Type 2 Diabetes |
| NCT00205881 | Phase 4 | COMPLETED | Bilateral Benefit in Adult Users of the HiRes 90K Bionic Ear System |
| NCT00331539 | Phase 4 | UNKNOWN | Relationship Between Auto NRT and Behavioural T & C Levels With the Nucleus Freedom Cochlear Implant |
| NCT00424307 | Phase 4 | UNKNOWN | Bilateral Cochlear Implant Benefit in Young Children |
| NCT00765635 | Phase 4 | COMPLETED | Chlorobutanol, Potassium Carbonate, and Irrigation in Cerumen Removal |
| NCT03321006 | Phase 4 | COMPLETED | Treating Hearing Loss to Improve Mood and Cognition in Older Adults |
| NCT01499901 | Phase 3 | WITHDRAWN | Comparison of the Bilateral Sequential and Simultaneous Cochlear Implantation in the Deaf Children |
| NCT02561091 | Phase 3 | COMPLETED | AM-111 in the Treatment of Acute Inner Ear Hearing Loss |
| NCT03331627 | Phase 3 | COMPLETED | Safety and Efficacy of STR001-IT and STR001-ER in Patients With SSHL |
| NCT05532657 | Phase 3 | ACTIVE_NOT_RECRUITING | ACHIEVE Brain Health Follow-Up Study |
| NCT00001596 | Phase 2 | COMPLETED | Oral Pirfenidone for the Pulmonary Fibrosis of Hermansky-Pudlak Syndrome |
| NCT01663935 | Phase 2 | TERMINATED | Vision Response to Dopamine Replacement |
| NCT01373476 | Phase 2 | COMPLETED | Multicentre, Randomized, Controlled Trial of Qideng Mingmu Capsule in The Treatment of Diabetic Retinopathy |
| NCT01793090 | Phase 2 | COMPLETED | EPI-743 in Cobalamin C Defect: Effects on Visual and Neurological Impairment |
| NCT01176435 | Phase 2 | COMPLETED | Trial of L-DOPA as a Treatment to Improve Vision in Albinism |
| NCT00013455 | Phase 2 | COMPLETED | Quantifying Auditory Perceptual Learning Following Hearing Aid Fitting |
| NCT00323427 | Phase 2 | COMPLETED | Clinical Trial of the Living Well With Hearing Loss Workshop |
| NCT00552786 | Phase 2 | COMPLETED | Antioxidation Medication for Noise-induced Hearing Loss |
| NCT00802425 | Phase 2 | COMPLETED | Efficacy of AM-111 in Patients With Acute Sensorineural Hearing Loss |
| NCT01139281 | Phase 2 | COMPLETED | The Protective Effect of Ginkgo Biloba Extract on Cisplatin-induced Ototoxicity in Humans |
| NCT01451853 | Phase 2 | WITHDRAWN | SPI-1005 for Prevention and Treatment of Chemotherapy Induced Hearing Loss |
| NCT01588925 | Phase 2 | COMPLETED | Hearing Preservation Using Dexamethasone and Hyaluronic Acid for Cochlear Implantation |
| NCT01773278 | Phase 2 | UNKNOWN | Cholesterol and Antioxidant Treatment in Patients With Smith-Lemli-Opitz Syndrome (SLOS) |
| NCT02832128 | Phase 2 | COMPLETED | Evaluating Possible Improvement in Speech and Hearing Tests After 28 Days of Dosing of the Study Drug AUT00063 Compared to Placebo (QuicKfire) |
| NCT04915183 | Phase 2 | RECRUITING | Atorvastatin to Reduce Cisplatin-Induced Hearing Loss Among Individuals With Head and Neck Cancer |
| NCT05258773 | Phase 2 | COMPLETED | Evaluation of the Presence of SENS-401 in the Perilymph |
| NCT06340633 | Phase 2 | RECRUITING | SPI-1005 in Adults Receiving Cochlear Implant |
| NCT00582946 | Phase 1 | COMPLETED | Wide-Bandwidth Open Canal Hearing Aid For Better Multitalker Speech Understanding |
| NCT00584155 | Phase 1 | WITHDRAWN | Protection From Cisplatin Ototoxicity by Lactated Ringers |
| NCT01206829 | Phase 1 | UNKNOWN | Hearing Impairment, Cognitive Therapy and Coping |
| NCT01256229 | Phase 1 | COMPLETED | Outcomes In Children With Developmental Delay And Deafness |
| NCT01343394 | Phase 1 | WITHDRAWN | Safety of Autologous Human Umbilical Cord Blood Mononuclear Fraction to Treat Acquired Hearing Loss in Children |
| NCT01452607 | Phase 1 | COMPLETED | Study to Evaluate the Safety and Pharmacokinetics of SPI-1005 |
| NCT02259595 | Phase 1 | COMPLETED | Study to Determine the Safety, Tolerability, and Pharmacokinetic Profile of HPN-07 and HPN-07 Plus NAC |
| NCT04041440 | Phase 1 | COMPLETED | Speech Recognition Training in Children With Hearing Loss |
| NCT07218913 | Phase 1 | RECRUITING | Testing the Addition of Pedmark to Cisplatin Chemotherapy for Reducing Drug-Induced Ear Damage in Men With Stage II-III Metastatic Testicular Germ Cell Tumors |
| NCT00467831 | Phase 1/2 | TERMINATED | Pilot Study of a Multi-Drug Regimen for Severe Pulmonary Fibrosis in Hermansky-Pudlak Syndrome |
| NCT07313618 | Early Phase 1 | RECRUITING | Safety and Efficacy of a Single Suprachoroidal Injection of JWK010 Gene Therapy in Subjects With Oculocutaneous Albinism Type 1 (OCA1) |
| NCT00001153 | Not specified | COMPLETED | Visual Function and Ocular Pigmentation in Albinism |
| NCT00808106 | Not specified | COMPLETED | Clinical, Cellular, and Molecular Investigation Into Oculocutaneous Albinism |
| NCT02200263 | Not specified | COMPLETED | The Effects of Lutein and Zeaxanthin Supplementation on Vision in Patients With Albinism |
| NCT04068961 | Not specified | COMPLETED | New Strategies of Genetic Study of Patients With Oculocutaneous Albinism |
| NCT06138509 | Not specified | RECRUITING | Peripheral Serotonin and Albinism |
| NCT04311112 | Phase 2/3 | WITHDRAWN | Safety and Efficacy of Zuretinol Acetate in Subjects With Inherited Retinal Disease |
| NCT04008121 | Early Phase 1 | RECRUITING | Feasibility and Safety of MB-102 in Ocular Angiography as Compared to Fluorescein Sodium |
| NCT00259701 | Not specified | COMPLETED | Microvascular Reactivity. |
| NCT00331370 | Not specified | UNKNOWN | Hypertension Related Damage to the Microcirculation in South Asian: Emergence, Predictive Power and Reversibility |
| NCT00618644 | Not specified | WITHDRAWN | Ranibizumab for Neovascularization in Sickle Cell Retinopathy |
| NCT00735657 | Not specified | COMPLETED | Anesthesia for Pars Plana Vitrectomy (PPV) With Insulin Needle |
| NCT00828425 | Not specified | COMPLETED | Management of Diabetes Mellitus Patients With Retinopathy |
| NCT00969956 | Not specified | TERMINATED | Time To Complications Occurs in Diabetes |
| NCT01412905 | Not specified | COMPLETED | Telemedicine Retinal Screening Utilizing a Mobile Medical Unit |
| NCT01546766 | Not specified | COMPLETED | Rapid, Non-invasive, Regional Functional Imaging of the Retina. (Diabetic Retinopathy Diagnosis Device) |
| NCT01552993 | Not specified | TERMINATED | Registration and Treatment of Pain During Eye Examination of Prematurity |
| NCT01815567 | Not specified | COMPLETED | DETECT and Retinal Outcomes in Hypertension |
| NCT02321904 | Not specified | COMPLETED | Corneal Confocal Microscopy to Detect Diabetic Neuropathy in Children |
| NCT02466607 | Not specified | COMPLETED | Study of Stimulus Parameters in Flicker Electroretinogram (ERG) |
| NCT02558478 | Not specified | UNKNOWN | Identification of New Genes Implicated in Rare Neurosensory Diseases by Whole Exome Sequencing |
| NCT02702973 | Not specified | UNKNOWN | Characteristic Analysis of Retinopathy Associated With High Doses of Interferon α-2b Therapy |
Predicted chemistry — Sugi Predict
The predicted patent-compound landscape for TYR across ~30M SureChEMBL compounds — explore on Sugi Predict.
Related Atlas pages
- Associated diseases: oculocutaneous albinism type 1A, minimal pigment oculocutaneous albinism type 1, temperature-sensitive oculocutaneous albinism type 1, oculocutaneous albinism type 1B, Waardenburg syndrome type 2, oculocutaneous albinism type 1
- Targeted by drugs: Mequinol, Monobenzone
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): age-related macular degeneration, albinism, autosomal recessive ocular albinism, basal cell carcinoma, choroidal neovascularization, congenital nystagmus, cutaneous melanoma, foveal hypoplasia, hearing loss disorder, hypopigmentation of the skin, melanoma, melanoma, cutaneous malignant, susceptibility to, 8, minimal pigment oculocutaneous albinism type 1, myopia, ocular albinism, oculocutaneous albinism, oculocutaneous albinism type 1, oculocutaneous albinism type 1A, oculocutaneous albinism type 1B, pathologic nystagmus, presbycusis, retinal disorder, skin sensitivity to sun, squamous cell carcinoma, strabismus, sunburn, temperature-sensitive oculocutaneous albinism type 1, vitiligo, Waardenburg syndrome type 2