UACA
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Also known as FLJ10128KIAA1561
Summary
UACA (uveal autoantigen with coiled-coil domains and ankyrin repeats, HGNC:15947) is a protein-coding gene on chromosome 15q23, encoding Uveal autoantigen with coiled-coil domains and ankyrin repeats (Q9BZF9). Regulates APAF1 expression and plays an important role in the regulation of stress-induced apoptosis.
This gene encodes a protein that contains ankyrin repeats and coiled coil domains and likely plays a role in apoptosis. Studies in rodents have implicated the encoded protein in the stimulation of apoptosis and the regulation of mammary gland involution, in which the mammary gland returns to its pre-pregnant state. This protein has also been proposed to negatively regulate apoptosis based on experiments in human cell lines in which the protein was shown to interact with PRKC apoptosis WT1 regulator protein, also known as PAR-4, and inhibit translocation of the PAR-4 receptor. Autoantibodies to this protein have been identified in human patients with panuveitis and Graves’ disease. Differential expression of this gene has been observed in various human cancers.
Source: NCBI Gene 55075 — RefSeq curated summary.
At a glance
- GWAS associations: 2
- Clinical variants (ClinVar): 239 total
- Druggable target: yes
- MANE Select transcript:
NM_018003
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:15947 |
| Approved symbol | UACA |
| Name | uveal autoantigen with coiled-coil domains and ankyrin repeats |
| Location | 15q23 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ10128, KIAA1561 |
| Ensembl gene | ENSG00000137831 |
| Ensembl biotype | protein_coding |
| OMIM | 612516 |
| Entrez | 55075 |
Gene structure
Transcript identifiers
Ensembl transcripts: 17 — 9 protein_coding, 6 retained_intron, 2 protein_coding_CDS_not_defined
ENST00000322954, ENST00000379983, ENST00000539319, ENST00000558308, ENST00000558758, ENST00000559156, ENST00000559183, ENST00000559206, ENST00000559290, ENST00000560167, ENST00000560441, ENST00000560523, ENST00000560831, ENST00000560951, ENST00000908301, ENST00000932403, ENST00000966074
RefSeq mRNA: 2 — MANE Select: NM_018003
NM_001008224, NM_018003
CCDS: CCDS10235, CCDS32280
Canonical transcript exons
ENST00000322954 — 19 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001027232 | 70671965 | 70672001 |
| ENSE00001027237 | 70763330 | 70763558 |
| ENSE00001027238 | 70671039 | 70671091 |
| ENSE00001027241 | 70699527 | 70699660 |
| ENSE00001936843 | 70654554 | 70657127 |
| ENSE00002529733 | 70664662 | 70664814 |
| ENSE00002729413 | 70666724 | 70669462 |
| ENSE00003469706 | 70690454 | 70690511 |
| ENSE00003473767 | 70676493 | 70676591 |
| ENSE00003513451 | 70687750 | 70687820 |
| ENSE00003530631 | 70677108 | 70677140 |
| ENSE00003558239 | 70678099 | 70678206 |
| ENSE00003592180 | 70691299 | 70691363 |
| ENSE00003599481 | 70682758 | 70682795 |
| ENSE00003617095 | 70660151 | 70660216 |
| ENSE00003641685 | 70684265 | 70684446 |
| ENSE00003652190 | 70687540 | 70687646 |
| ENSE00003666698 | 70679608 | 70679676 |
| ENSE00003691822 | 70695017 | 70695105 |
Expression profiles
Bgee: expression breadth ubiquitous, 255 present calls, max score 99.42.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 36.2847 / max 3428.0846, expressed in 1632 samples.
FANTOM5 promoters (8 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 150732 | 21.4903 | 1549 |
| 150728 | 6.0754 | 665 |
| 150733 | 5.5626 | 1458 |
| 150731 | 1.3993 | 648 |
| 150730 | 0.7065 | 274 |
| 150725 | 0.5983 | 129 |
| 150726 | 0.2312 | 75 |
| 150727 | 0.2210 | 50 |
Top tissues by expression
256 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| calcaneal tendon | UBERON:0003701 | 99.42 | gold quality |
| pancreatic ductal cell | CL:0002079 | 98.71 | gold quality |
| sural nerve | UBERON:0015488 | 98.70 | gold quality |
| cardia of stomach | UBERON:0001162 | 98.69 | gold quality |
| tibial nerve | UBERON:0001323 | 98.52 | gold quality |
| tendon | UBERON:0000043 | 98.50 | gold quality |
| renal medulla | UBERON:0000362 | 98.47 | gold quality |
| ventral tegmental area | UBERON:0002691 | 98.26 | gold quality |
| pylorus | UBERON:0001166 | 98.16 | gold quality |
| kidney epithelium | UBERON:0004819 | 98.13 | silver quality |
| nipple | UBERON:0002030 | 98.11 | gold quality |
| trigeminal ganglion | UBERON:0001675 | 98.08 | gold quality |
| subthalamic nucleus | UBERON:0001906 | 98.04 | gold quality |
| dorsal plus ventral thalamus | UBERON:0001897 | 98.03 | gold quality |
| inferior vagus X ganglion | UBERON:0005363 | 98.02 | gold quality |
| medulla oblongata | UBERON:0001896 | 98.01 | gold quality |
| visceral pleura | UBERON:0002401 | 97.98 | gold quality |
| lateral globus pallidus | UBERON:0002476 | 97.98 | gold quality |
| superior surface of tongue | UBERON:0007371 | 97.94 | gold quality |
| gastrocnemius | UBERON:0001388 | 97.93 | gold quality |
| trachea | UBERON:0003126 | 97.92 | gold quality |
| superior vestibular nucleus | UBERON:0007227 | 97.88 | gold quality |
| buccal mucosa cell | CL:0002336 | 97.82 | gold quality |
| muscle of leg | UBERON:0001383 | 97.78 | gold quality |
| lateral nuclear group of thalamus | UBERON:0002736 | 97.63 | gold quality |
| pons | UBERON:0000988 | 97.62 | gold quality |
| substantia nigra pars reticulata | UBERON:0001966 | 97.62 | gold quality |
| dorsal root ganglion | UBERON:0000044 | 97.57 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 97.57 | gold quality |
| substantia nigra pars compacta | UBERON:0001965 | 97.55 | gold quality |
Single-cell (SCXA)
Detected in 11 experiment(s), a significant marker in 10.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-CURD-135 | yes | 2044.52 |
| E-MTAB-3929 | yes | 849.09 |
| E-HCAD-13 | yes | 247.32 |
| E-HCAD-31 | yes | 25.23 |
| E-GEOD-84465 | yes | 9.09 |
| E-CURD-112 | yes | 8.34 |
| E-HCAD-35 | yes | 7.26 |
| E-GEOD-130148 | yes | 4.42 |
| E-HCAD-25 | yes | 4.29 |
| E-MTAB-10018 | no | 385.74 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): NFKB1
miRNA regulators (miRDB)
117 targeting UACA, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-9-5P | 100.00 | 72.28 | 2361 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-6833-3P | 100.00 | 70.63 | 3197 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-1252-5P | 100.00 | 69.80 | 2774 |
| HSA-MIR-4768-5P | 100.00 | 69.49 | 2861 |
| HSA-MIR-186-5P | 99.99 | 70.83 | 3707 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-4789-3P | 99.99 | 70.75 | 2484 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-12136 | 99.98 | 72.81 | 5713 |
| HSA-MIR-3688-3P | 99.97 | 72.02 | 2834 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
| HSA-MIR-590-3P | 99.96 | 74.34 | 6478 |
| HSA-MIR-570-3P | 99.96 | 72.41 | 4910 |
| HSA-MIR-4725-3P | 99.96 | 69.53 | 2520 |
| HSA-MIR-6780B-5P | 99.96 | 69.60 | 2562 |
| HSA-MIR-548AT-5P | 99.96 | 70.83 | 2666 |
| HSA-MIR-548AJ-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-548X-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-6778-3P | 99.96 | 67.29 | 2693 |
| HSA-MIR-3910 | 99.95 | 71.13 | 2227 |
| HSA-MIR-23A-3P | 99.95 | 74.24 | 3163 |
| HSA-MIR-23B-3P | 99.95 | 74.24 | 3163 |
| HSA-MIR-23C | 99.95 | 73.92 | 3192 |
| HSA-MIR-548J-3P | 99.94 | 72.61 | 4881 |
| HSA-MIR-141-3P | 99.94 | 72.79 | 2421 |
| HSA-MIR-200A-3P | 99.94 | 72.68 | 2420 |
| HSA-MIR-548AE-3P | 99.93 | 72.66 | 4867 |
Literature-anchored findings (GeneRIF, showing 3)
- UACA is a novel candidate for eye muscle autoantigens in thyroid-associated ophthalmopathy (PMID:15358194)
- The down-regulation of APIP and UACA expression suggests that the threshold to activate the apoptosome apparatus may be decreased in non-small cell lung cancer cells. (PMID:22407486)
- Lycopene inhibits RCAN1-mediated apoptosis by reducing ROS levels and by inhibiting NF-kappaB activation, Nucling induction, and the increase in apoptotic indices in neuronal cells. (PMID:27928873)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | uacab | ENSDARG00000060238 |
| mus_musculus | Uaca | ENSMUSG00000034485 |
| rattus_norvegicus | Uaca | ENSRNOG00000012868 |
Paralogs (2): ANKRD24 (ENSG00000089847), ASB2 (ENSG00000100628)
Protein
Protein identifiers
Uveal autoantigen with coiled-coil domains and ankyrin repeats — Q9BZF9 (reviewed: Q9BZF9)
All UniProt accessions (5): Q9BZF9, F5H2B9, H0YMI1, H0YN48, H0YNH8
UniProt curated annotations — full annotation on UniProt →
Function. Regulates APAF1 expression and plays an important role in the regulation of stress-induced apoptosis. Promotes apoptosis by regulating three pathways, apoptosome up-regulation, LGALS3/galectin-3 down-regulation and NF-kappa-B inactivation. Regulates the redistribution of APAF1 into the nucleus after proapoptotic stress. Down-regulates the expression of LGALS3 by inhibiting NFKB1. Modulates isoactin dynamics to regulate the morphological alterations required for cell growth and motility. Interaction with ARF6 may modulate cell shape and motility after injury. May be involved in multiple neurite formation.
Subunit / interactions. Component of the apoptosome complex, composed of APAF1, pro-caspase-9 and UACA. In the complex, it probably interacts directly with APAF1. Interacts with LGALS3, ARF6 and ACTB. Interacts with RAB39A.
Subcellular location. Nucleus. Cytoplasm. Cytoskeleton.
Tissue specificity. Highly expressed in skeletal muscle, heart, kidney and pancreas. Expressed in choroid, retina and epidermal melanocytes. Expressed in eye muscles and thyroid follicular cells.
Induction. Up-regulated after TSH stimulation.
Miscellaneous. UACA is a possible target autoantigen in Vogt-Koyanagi-Harada (VKH), Behcet disease (BD) and sarcoidosis that cause different types of panuevitis.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9BZF9-1 | 1 | yes |
| Q9BZF9-2 | 2 |
RefSeq proteins (2): NP_001008225, NP_060473* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000727 | T_SNARE_dom | Domain |
| IPR002110 | Ankyrin_rpt | Repeat |
| IPR036770 | Ankyrin_rpt-contain_sf | Homologous_superfamily |
| IPR042420 | RAI14/UACA | Family |
Pfam: PF12796
UniProt features (16 total): repeat 6, sequence conflict 2, coiled-coil region 2, chain 1, modified residue 1, cross-link 1, splice variant 1, sequence variant 1, region of interest 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9BZF9-F1 | 74.08 | 0.09 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (2): 1, 1035
Function
Pathways and Gene Ontology
Reactome pathways
2 pathways
| ID | Pathway |
|---|---|
| R-HSA-9013407 | RHOH GTPase cycle |
| R-HSA-9627069 | Regulation of the apoptosome activity |
MSigDB gene sets: 197 (showing top):
GSE18804_SPLEEN_MACROPHAGE_VS_COLON_TUMORAL_MACROPHAGE_DN, MYOGENIN_Q6, BERTUCCI_MEDULLARY_VS_DUCTAL_BREAST_CANCER_DN, GOBP_INFLAMMATORY_RESPONSE, MONNIER_POSTRADIATION_TUMOR_ESCAPE_UP, NFKB_Q6, GOBP_NEGATIVE_REGULATION_OF_INTRACELLULAR_SIGNAL_TRANSDUCTION, NFKB_C, GOBP_APOPTOTIC_SIGNALING_PATHWAY, FOSTER_TOLERANT_MACROPHAGE_UP, ROZANOV_MMP14_TARGETS_UP, GOBP_REGULATION_OF_RESPONSE_TO_STRESS, GOBP_NEGATIVE_REGULATION_OF_DEFENSE_RESPONSE, GOBP_INTRINSIC_APOPTOTIC_SIGNALING_PATHWAY_IN_RESPONSE_TO_DNA_DAMAGE, GOBP_DNA_DAMAGE_RESPONSE
GO Biological Process (4): intrinsic apoptotic signaling pathway in response to DNA damage (GO:0008630), intrinsic apoptotic signaling pathway in response to oxidative stress (GO:0008631), negative regulation of inflammatory response (GO:0050728), negative regulation of non-canonical NF-kappaB signal transduction (GO:1901223)
GO Molecular Function (2): actin binding (GO:0003779), protein binding (GO:0005515)
GO Cellular Component (7): extracellular region (GO:0005576), nucleus (GO:0005634), nucleoplasm (GO:0005654), cytosol (GO:0005829), cytoskeleton (GO:0005856), extracellular exosome (GO:0070062), cytoplasm (GO:0005737)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| RHO GTPase cycle | 1 |
| Formation of apoptosome | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 4 |
| intrinsic apoptotic signaling pathway | 2 |
| DNA damage response | 1 |
| inflammatory response | 1 |
| negative regulation of defense response | 1 |
| negative regulation of response to external stimulus | 1 |
| regulation of inflammatory response | 1 |
| non-canonical NF-kappaB signal transduction | 1 |
| regulation of non-canonical NF-kappaB signal transduction | 1 |
| negative regulation of intracellular signal transduction | 1 |
| cytoskeletal protein binding | 1 |
| binding | 1 |
| intracellular membrane-bounded organelle | 1 |
| nuclear lumen | 1 |
| cytoplasm | 1 |
| intracellular membraneless organelle | 1 |
| extracellular vesicle | 1 |
| intracellular anatomical structure | 1 |
Protein interactions and networks
STRING
1395 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| UACA | APAF1 | O14727 | 804 |
| UACA | LGALS3 | P17931 | 770 |
| UACA | PAWR | Q96IZ0 | 591 |
| UACA | IMMT | Q16891 | 583 |
| UACA | PRADC1 | Q9BSG0 | 582 |
| UACA | FLII | Q13045 | 576 |
| UACA | EFHD2 | Q96C19 | 561 |
| UACA | GEMIN4 | P57678 | 539 |
| UACA | TRIM21 | P19474 | 522 |
| UACA | CYCS | P00001 | 505 |
| UACA | BCL2 | P10415 | 504 |
| UACA | PRSS37 | A4D1T9 | 502 |
| UACA | CASP9 | P55211 | 487 |
| UACA | TCP10L | Q8TDR4 | 473 |
| UACA | CCDC18 | Q5T9S5 | 470 |
IntAct
163 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| PPP1CB | CCDC85C | psi-mi:“MI:0914”(association) | 0.750 |
| PPP1CB | CCDC85C | psi-mi:“MI:2364”(proximity) | 0.750 |
| CFTR | ESYT2 | psi-mi:“MI:0914”(association) | 0.710 |
| CFTR | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.710 |
| MIS18A | DCTN6 | psi-mi:“MI:0914”(association) | 0.640 |
| IFT22 | IFT56 | psi-mi:“MI:0914”(association) | 0.640 |
| CCDC120 | AIP | psi-mi:“MI:0914”(association) | 0.640 |
| YWHAH | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.610 |
| UACA | KRT40 | psi-mi:“MI:0915”(physical association) | 0.560 |
| KRT40 | UACA | psi-mi:“MI:0915”(physical association) | 0.560 |
| RTP2 | UACA | psi-mi:“MI:0915”(physical association) | 0.560 |
| KRT31 | UACA | psi-mi:“MI:0915”(physical association) | 0.560 |
| UACA | UBQLN2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CCDC125 | UACA | psi-mi:“MI:0915”(physical association) | 0.560 |
| PRKAR1B | UACA | psi-mi:“MI:0915”(physical association) | 0.560 |
| AHCYL1 | UACA | psi-mi:“MI:0915”(physical association) | 0.560 |
| PICK1 | ILVBL | psi-mi:“MI:0914”(association) | 0.530 |
| BORCS6 | HSBP1 | psi-mi:“MI:0914”(association) | 0.530 |
| PNMA5 | CARNMT1 | psi-mi:“MI:0914”(association) | 0.530 |
| YWHAQ | IGLC7 | psi-mi:“MI:0914”(association) | 0.530 |
| JPH4 | ZSWIM8 | psi-mi:“MI:0914”(association) | 0.530 |
| VTN | HAT1 | psi-mi:“MI:0914”(association) | 0.530 |
BioGRID (177): UACA (Affinity Capture-MS), KRT40 (Two-hybrid), UACA (Affinity Capture-MS), UACA (Affinity Capture-MS), UACA (Affinity Capture-MS), UACA (Affinity Capture-MS), UACA (Affinity Capture-MS), UACA (Affinity Capture-MS), UACA (Affinity Capture-MS), UACA (Affinity Capture-MS), UACA (Affinity Capture-MS), UACA (Affinity Capture-MS), UACA (Affinity Capture-MS), UACA (Affinity Capture-MS), UACA (Affinity Capture-MS)
ESM2 similar proteins: A0A8M2BID5, A0A8M9PQ61, A1Z8P9, A6QR54, B4KE73, E9Q7G0, F1R4Y7, O15083, O55156, O60437, O61308, Q11102, Q13439, Q15643, Q3SWS9, Q5DTN8, Q5M9N0, Q5PQ23, Q5RI56, Q5U4E6, Q5VZ66, Q5ZKK5, Q66H89, Q6DFL0, Q6PH08, Q6ZU80, Q7ZW57, Q811U3, Q8BI22, Q8BVL9, Q8CDI6, Q8CDI7, Q8CGB3, Q8HYY4, Q8IUD2, Q8K3M6, Q8WXW3, Q91VW5, Q96AA8, Q96N16
Diamond homologs: Q5U312, Q80VM7, Q8CGB3, Q8HYY4, Q8N283, Q8TF21, Q9BZF9, Q9EP71, Q9GL21, Q9P0K7, Q0VCS9, Q8IV38
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 154 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Activation of BAD and translocation to mitochondria | 5 | 36.6× | 7e-06 |
| Signaling by FLT3 ITD and TKD mutants | 5 | 36.6× | 7e-06 |
| Constitutive Signaling by EGFRvIII | 5 | 34.3× | 1e-05 |
| Chk1/Chk2(Cds1) mediated inactivation of Cyclin B:Cdk1 complex | 5 | 32.3× | 1e-05 |
| Signaling by ERBB2 ECD mutants | 5 | 32.3× | 1e-05 |
| SARS-CoV-1 targets host intracellular signalling and regulatory pathways | 5 | 32.3× | 1e-05 |
| SHC-mediated cascade:FGFR4 | 6 | 31.4× | 4e-06 |
| Tie2 Signaling | 5 | 28.9× | 2e-05 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| cell-cell adhesion mediated by cadherin | 6 | 18.0× | 1e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
239 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 178 |
| Likely benign | 21 |
| Benign | 17 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
3622 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 15:70657126:CC:C | acceptor_gain | 1.0000 |
| 15:70657127:CC:C | acceptor_gain | 1.0000 |
| 15:70657127:CCTT:C | acceptor_loss | 1.0000 |
| 15:70657128:C:CC | acceptor_gain | 1.0000 |
| 15:70657128:C:T | acceptor_gain | 1.0000 |
| 15:70657129:T:A | acceptor_loss | 1.0000 |
| 15:70657131:C:CT | acceptor_gain | 1.0000 |
| 15:70660145:CTTTA:C | donor_loss | 1.0000 |
| 15:70660146:TTTA:T | donor_loss | 1.0000 |
| 15:70660147:TTAC:T | donor_loss | 1.0000 |
| 15:70660148:TA:T | donor_loss | 1.0000 |
| 15:70660149:ACC:A | donor_loss | 1.0000 |
| 15:70660215:TC:T | acceptor_gain | 1.0000 |
| 15:70660216:CC:C | acceptor_gain | 1.0000 |
| 15:70660216:CCTAG:C | acceptor_loss | 1.0000 |
| 15:70660223:A:C | acceptor_gain | 1.0000 |
| 15:70660225:G:C | acceptor_gain | 1.0000 |
| 15:70664660:A:AC | donor_gain | 1.0000 |
| 15:70664660:ACGG:A | donor_gain | 1.0000 |
| 15:70664661:C:CC | donor_gain | 1.0000 |
| 15:70664661:CGGC:C | donor_gain | 1.0000 |
| 15:70669458:GTACA:G | acceptor_gain | 1.0000 |
| 15:70669459:TACA:T | acceptor_gain | 1.0000 |
| 15:70669460:ACA:A | acceptor_gain | 1.0000 |
| 15:70669461:CA:C | acceptor_gain | 1.0000 |
| 15:70669461:CAC:C | acceptor_gain | 1.0000 |
| 15:70669463:C:CC | acceptor_gain | 1.0000 |
| 15:70671033:TATTA:T | donor_loss | 1.0000 |
| 15:70671034:ATTAC:A | donor_loss | 1.0000 |
| 15:70671035:TTA:T | donor_loss | 1.0000 |
AlphaMissense
9455 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 15:70691339:G:T | A109D | 0.995 |
| 15:70669159:A:G | S509P | 0.994 |
| 15:70684427:A:G | C208R | 0.994 |
| 15:70687798:G:C | S149R | 0.994 |
| 15:70687798:G:T | S149R | 0.994 |
| 15:70687800:T:G | S149R | 0.994 |
| 15:70690457:C:G | A141P | 0.994 |
| 15:70691306:A:G | L120P | 0.994 |
| 15:70669116:A:G | L523P | 0.993 |
| 15:70684393:A:G | L219S | 0.993 |
| 15:70684430:C:G | G207R | 0.993 |
| 15:70691340:C:G | A109P | 0.993 |
| 15:70660167:A:G | L1388P | 0.992 |
| 15:70660176:C:G | R1385P | 0.992 |
| 15:70684360:T:A | D230V | 0.992 |
| 15:70684361:C:G | D230H | 0.992 |
| 15:70684429:C:T | G207D | 0.992 |
| 15:70691342:G:T | A108D | 0.992 |
| 15:70690465:A:T | L138H | 0.991 |
| 15:70699626:A:G | L38S | 0.991 |
| 15:70669192:C:G | A498P | 0.990 |
| 15:70678106:A:G | L331P | 0.990 |
| 15:70684425:G:C | C208W | 0.990 |
| 15:70687633:G:C | P170R | 0.990 |
| 15:70690456:G:T | A141D | 0.990 |
| 15:70664804:A:G | L1324P | 0.989 |
| 15:70684330:G:T | A240E | 0.989 |
| 15:70687621:G:T | A174D | 0.989 |
| 15:70691315:A:G | L117P | 0.989 |
| 15:70687553:C:G | D197H | 0.988 |
dbSNP variants (sampled 300 via entrez): RS1000001675 (15:70718042 C>T), RS1000023213 (15:70739430 AC>A), RS1000028633 (15:70689970 T>C), RS1000053508 (15:70767106 G>A,C,T), RS1000054454 (15:70724485 T>C), RS1000103059 (15:70671515 C>T), RS1000121676 (15:70690360 A>T), RS1000132369 (15:70713274 G>A), RS1000166032 (15:70764573 T>A,C), RS1000169895 (15:70663100 T>A), RS1000196222 (15:70701285 C>A,T), RS1000196333 (15:70711339 C>T), RS1000219164 (15:70716724 A>T), RS1000221049 (15:70656903 T>C,G), RS1000229750 (15:70759329 A>T)
Disease associations
OMIM: gene MIM:612516 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST002113_3 | Pulmonary function | 3.000000e-09 |
| GCST006061_217 | Atrial fibrillation | 2.000000e-09 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0003892 | pulmonary function measurement |
| EFO:0004713 | FEV/FVC ratio |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL6067189 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
2 potent at pChembl≥5 of 2 total, top 2 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 5.79 | Kd | 1612 | nM | CHEMBL5653589 |
| 5.79 | ED50 | 1612 | nM | CHEMBL5653589 |
PubChem BioAssay actives
1 with measured affinity, of 2 total; 1 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2149700: Binding affinity to human UACA incubated for 45 mins by Kinobead based pull down assay | kd | 1.6119 | uM |
CTD chemical–gene interactions
53 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol A | decreases expression, decreases methylation, increases methylation | 2 |
| sodium arsenite | affects cotreatment, decreases expression, increases abundance, increases expression | 2 |
| potassium chromate(VI) | affects cotreatment, decreases expression | 2 |
| chromium hexavalent ion | decreases expression, increases abundance, increases expression | 2 |
| entinostat | decreases expression, increases expression, affects cotreatment | 2 |
| Arsenic | increases abundance, increases expression, affects cotreatment, decreases expression | 2 |
| Cisplatin | decreases expression | 2 |
| Nickel | decreases expression | 2 |
| dicrotophos | decreases expression | 1 |
| methylmercuric chloride | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| alpha-pinene | affects cotreatment, increases oxidation, increases abundance | 1 |
| pyrogallol 1,3-dimethyl ether | affects cotreatment, affects localization, decreases expression | 1 |
| trichostatin A | increases expression | 1 |
| tris(2-butoxyethyl) phosphate | affects expression | 1 |
| arsenite | affects binding, decreases reaction | 1 |
| zinc chromate | increases abundance, increases expression | 1 |
| manganese chloride | affects cotreatment, decreases expression, increases abundance | 1 |
| methacrylaldehyde | affects cotreatment, increases oxidation, increases abundance | 1 |
| epigallocatechin gallate | affects cotreatment, decreases expression | 1 |
| perfluorooctane sulfonic acid | decreases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| 2-palmitoylglycerol | increases expression | 1 |
| K 7174 | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| dimethylarsinous acid | decreases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| Resveratrol | decreases expression | 1 |
| Sunitinib | decreases expression | 1 |
| Vorinostat | increases expression | 1 |
ChEMBL screening assays
1 unique, capped per target: 1 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL5652742 | Binding | Binding affinity to human UACA incubated for 45 mins by Kinobead based pull down assay | NVP-BHG712: Effects of Regioisomers on the Affinity and Selectivity toward the EPHrin Family. — ChemMedChem |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): atrial fibrillation