UBE2D3-AS1

Summary

UBE2D3-AS1 (UBE2D3 antisense RNA 1, HGNC:54095) is a long non-coding RNA gene on chromosome 4q24.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54095
Approved symbol	UBE2D3-AS1
Name	UBE2D3 antisense RNA 1
Location	4q24
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000246560
Ensembl biotype	lncRNA
Entrez	105377348
RNAcentral	URS0000812122 — lncRNA, 1056 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 7 — 7 lncRNA

ENST00000501133, ENST00000686558, ENST00000723676, ENST00000723677, ENST00000723678, ENST00000723679, ENST00000723680

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000501133 — 2 exons

Exon	Start	End
ENSE00004045587	102827592	102828185
ENSE00004045590	102843324	102844111

Expression profiles

Bgee: expression breadth ubiquitous, 186 present calls, max score 91.42.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 2.5026 / max 103.9666, expressed in 1218 samples.

FANTOM5 promoters (4 alternative TSS)

Promoter ID	TPM avg	Samples expressed
49102	1.3649	840
49103	0.6362	252
49101	0.3321	156
49104	0.1692	72

Top tissues by expression

234 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sperm	CL:0000019	91.42	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	88.90	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	87.23	gold quality
buccal mucosa cell	CL:0002336	86.93	gold quality
cardiac muscle of right atrium	UBERON:0003379	83.31	gold quality
hindlimb stylopod muscle	UBERON:0004252	81.92	gold quality
biceps brachii	UBERON:0001507	79.08	gold quality
vastus lateralis	UBERON:0001379	78.77	silver quality
muscle of leg	UBERON:0001383	78.44	gold quality
gastrocnemius	UBERON:0001388	78.34	gold quality
skeletal muscle tissue of biceps brachii	UBERON:0004502	77.98	silver quality
skeletal muscle tissue	UBERON:0001134	77.53	gold quality
muscle tissue	UBERON:0002385	77.50	gold quality
kidney epithelium	UBERON:0004819	76.44	gold quality
deltoid	UBERON:0001476	76.32	silver quality
apex of heart	UBERON:0002098	75.82	gold quality
islet of Langerhans	UBERON:0000006	75.68	gold quality
right testis	UBERON:0004534	75.49	gold quality
heart left ventricle	UBERON:0002084	75.00	gold quality
cardiac ventricle	UBERON:0002082	74.77	gold quality
left testis	UBERON:0004533	74.74	gold quality
upper arm skin	UBERON:0004263	74.29	gold quality
testis	UBERON:0000473	73.72	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	73.58	silver quality
cardiac atrium	UBERON:0002081	73.55	gold quality
heart	UBERON:0000948	73.53	gold quality
right atrium auricular region	UBERON:0006631	73.20	gold quality
oocyte	CL:0000023	72.75	gold quality
stromal cell of endometrium	CL:0002255	72.10	gold quality
nasal cavity epithelium	UBERON:0005384	71.71	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.89

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.