UBE3A
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Also known as ASANCRE6-APFLJ26981
Summary
UBE3A (ubiquitin protein ligase E3A, HGNC:12496) is a protein-coding gene on chromosome 15q11.2, encoding Ubiquitin-protein ligase E3A (Q05086). E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and transfers it to its substrates. It is haploinsufficient (ClinGen: sufficient evidence).
This gene encodes an E3 ubiquitin-protein ligase, part of the ubiquitin protein degradation system. This imprinted gene is maternally expressed in brain and biallelically expressed in other tissues. Maternally inherited deletion of this gene causes Angelman Syndrome, characterized by severe motor and intellectual retardation, ataxia, hypotonia, epilepsy, absence of speech, and characteristic facies. The protein also interacts with the E6 protein of human papillomavirus types 16 and 18, resulting in ubiquitination and proteolysis of tumor protein p53. Alternative splicing of this gene results in three transcript variants encoding three isoforms with different N-termini. Additional transcript variants have been described, but their full length nature has not been determined.
Source: NCBI Gene 7337 — RefSeq curated summary.
At a glance
- Gene–disease (curated): Angelman syndrome (Definitive, ClinGen)
- GWAS associations: 4
- Clinical variants (ClinVar): 43 total — 8 pathogenic, 1 likely-pathogenic
- Phenotypes (HPO): 98
- Druggable target: yes
- Dosage sensitivity (ClinGen): haploinsufficiency sufficient evidence, triplosensitivity no evidence
- MANE Select transcript:
NM_130839
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:12496 |
| Approved symbol | UBE3A |
| Name | ubiquitin protein ligase E3A |
| Location | 15q11.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | AS, ANCR, E6-AP, FLJ26981 |
| Ensembl gene | ENSG00000114062 |
| Ensembl biotype | protein_coding |
| OMIM | 601623 |
| Entrez | 7337 |
Gene structure
Transcript identifiers
Ensembl transcripts: 40 — 31 protein_coding, 5 retained_intron, 4 protein_coding_CDS_not_defined
ENST00000428984, ENST00000438097, ENST00000566215, ENST00000604860, ENST00000625681, ENST00000625778, ENST00000626068, ENST00000626176, ENST00000626589, ENST00000626793, ENST00000627018, ENST00000628267, ENST00000628733, ENST00000628890, ENST00000629252, ENST00000629886, ENST00000630424, ENST00000630607, ENST00000630907, ENST00000631247, ENST00000635914, ENST00000636667, ENST00000637886, ENST00000638011, ENST00000638155, ENST00000648336, ENST00000649550, ENST00000650110, ENST00000675000, ENST00000675038, ENST00000675177, ENST00000675593, ENST00000676452, ENST00000858359, ENST00000858360, ENST00000918482, ENST00000918483, ENST00000970634, ENST00000970635, ENST00000970636
RefSeq mRNA: 28 — MANE Select: NM_130839
NM_000462, NM_001354505, NM_001354506, NM_001354507, NM_001354508, NM_001354509, NM_001354511, NM_001354512, NM_001354513, NM_001354523, NM_001354526, NM_001354538, NM_001354539, NM_001354540, NM_001354541, NM_001354542, NM_001354543, NM_001354544, NM_001354545, NM_001354546, NM_001354547, NM_001354548, NM_001354549, NM_001354550, NM_001354551, NM_001374461, NM_130838, NM_130839
CCDS: CCDS32177, CCDS45191, CCDS45192, CCDS86436, CCDS91966
Canonical transcript exons
ENST00000648336 — 13 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000778627 | 25355892 | 25356056 |
| ENSE00000778628 | 25356691 | 25356896 |
| ENSE00000778629 | 25360383 | 25360527 |
| ENSE00000815073 | 25340085 | 25340228 |
| ENSE00000815075 | 25354353 | 25354426 |
| ENSE00000815076 | 25354528 | 25354683 |
| ENSE00000815081 | 25370566 | 25371812 |
| ENSE00000815082 | 25375465 | 25375763 |
| ENSE00001376416 | 25411908 | 25411971 |
| ENSE00002454147 | 25333728 | 25339257 |
| ENSE00003576935 | 25409088 | 25409207 |
| ENSE00003638041 | 25405461 | 25405502 |
| ENSE00003840772 | 25438489 | 25439024 |
Expression profiles
Bgee: expression breadth ubiquitous, 295 present calls, max score 98.20.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 40.9184 / max 229.4964, expressed in 1822 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 149008 | 39.2146 | 1822 |
| 149009 | 1.2745 | 798 |
| 149007 | 0.3109 | 101 |
| 149002 | 0.1184 | 34 |
Top tissues by expression
295 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| sperm | CL:0000019 | 98.20 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 98.08 | gold quality |
| calcaneal tendon | UBERON:0003701 | 97.80 | gold quality |
| male germ cell | CL:0000015 | 97.75 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 97.75 | gold quality |
| biceps brachii | UBERON:0001507 | 97.56 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 97.37 | gold quality |
| nipple | UBERON:0002030 | 97.25 | gold quality |
| choroid plexus epithelium | UBERON:0003911 | 97.18 | gold quality |
| vastus lateralis | UBERON:0001379 | 97.15 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 97.14 | gold quality |
| pylorus | UBERON:0001166 | 97.11 | gold quality |
| cardia of stomach | UBERON:0001162 | 97.10 | gold quality |
| quadriceps femoris | UBERON:0001377 | 97.10 | gold quality |
| heart right ventricle | UBERON:0002080 | 97.09 | gold quality |
| ganglionic eminence | UBERON:0004023 | 97.09 | gold quality |
| cortical plate | UBERON:0005343 | 97.01 | gold quality |
| diaphragm | UBERON:0001103 | 96.88 | gold quality |
| ventricular zone | UBERON:0003053 | 96.88 | gold quality |
| body of tongue | UBERON:0011876 | 96.87 | gold quality |
| renal medulla | UBERON:0000362 | 96.83 | gold quality |
| tibialis anterior | UBERON:0001385 | 96.81 | gold quality |
| deltoid | UBERON:0001476 | 96.81 | gold quality |
| dorsal root ganglion | UBERON:0000044 | 96.78 | gold quality |
| gluteal muscle | UBERON:0002000 | 96.78 | gold quality |
| endothelial cell | CL:0000115 | 96.75 | gold quality |
| mammalian vulva | UBERON:0000997 | 96.64 | gold quality |
| trabecular bone tissue | UBERON:0002483 | 96.63 | gold quality |
| muscle tissue | UBERON:0002385 | 96.60 | gold quality |
| corpus callosum | UBERON:0002336 | 96.44 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-25 | yes | 36.79 |
| E-ANND-3 | yes | 10.91 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): MYC, TFCP2
miRNA regulators (miRDB)
230 targeting UBE3A, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-5692B | 100.00 | 71.32 | 2622 |
| HSA-MIR-5692C | 100.00 | 71.32 | 2622 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-4668-3P | 100.00 | 68.74 | 2635 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-4283 | 100.00 | 66.42 | 2097 |
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-196A-1-3P | 99.99 | 72.15 | 2772 |
| HSA-MIR-186-5P | 99.99 | 70.83 | 3707 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-3667-3P | 99.99 | 67.17 | 1636 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-548P | 99.98 | 72.25 | 3784 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-5696 | 99.98 | 72.36 | 4487 |
| HSA-MIR-507 | 99.97 | 70.11 | 1915 |
| HSA-MIR-3688-3P | 99.97 | 72.02 | 2834 |
| HSA-MIR-302C-5P | 99.97 | 72.56 | 3642 |
| HSA-MIR-607 | 99.97 | 73.62 | 5593 |
| HSA-MIR-1229-3P | 99.97 | 66.49 | 906 |
| HSA-MIR-6888-3P | 99.97 | 65.95 | 1170 |
| HSA-MIR-5688 | 99.96 | 73.23 | 4504 |
| HSA-MIR-495-3P | 99.96 | 72.81 | 4197 |
| HSA-MIR-557 | 99.96 | 70.01 | 1640 |
| HSA-MIR-4666A-3P | 99.96 | 71.71 | 3434 |
| HSA-MIR-302E | 99.96 | 70.74 | 2669 |
| HSA-MIR-141-3P | 99.94 | 72.79 | 2421 |
| HSA-MIR-200A-3P | 99.94 | 72.68 | 2420 |
| HSA-MIR-218-5P | 99.93 | 72.22 | 2103 |
Functional genomics
ClinGen dosage: haploinsufficiency 3 (sufficient evidence), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 40)
- evaluation for 22 clinical variables– including growth parameters, acquisition of motor skills, and history of seizures–and molecular and cytogenetic analyses are used to assign a molecular class (I-V) to patients for genotype-phenotype correlations (PMID:11748306)
- A borderline significant association with a 7 bp deletion in UBE3A (P = 0.01) was found. This polymorphism was then evaluated further in a larger series of families with tuberculosis, including 44 Guinean families and 57 families from South Africa. (PMID:12075004)
- Imprinted so that the maternal allele is preferentially expressed. (PMID:12095913)
- VCY2 protein interacts with the HECT domain of ubiquitin-protein ligase E3A (PMID:12207887)
- TIP120A functions as a negative regulator of SCF E3 ubiquitin ligases and may modulate other cullin ligases in a similar fashion. (PMID:12609982)
- degrades p53 in the presence of HPV16 E6 protein (PMID:12620801)
- Inherited mutation at the UBE3A gene (5.4%)in diagnosis of Angelman syndrome. (PMID:12725589)
- By combining our data with those of the literature, we demonstrate statistically that the frequency of UBE3A mutations is significantly higher in the familial than sporadic subsets of AS (angelman syndrome). (PMID:14981718)
- UBE3A gene mutations are associated with Angelman syndrome (PMID:15054837)
- Reduced expression of UBE3A is associated with Rett, Angelman and autism (PMID:15615769)
- E6AP ubiquitin ligase is required for transactivation of the hTERT promoter by the human papillomavirus E6 oncoprotein (PMID:15655249)
- E6AP mediates a broad spectrum of E6 functions, including virtually all functions that impact on the transcriptional program of HPV-positive cell lines. (PMID:15731267)
- E6AP is a component of estrogen receptor degradation via the ubiquitin-proteasome pathway; Ca(2+)/calmodulin modulates this degradation mechanism (PMID:16314411)
- data revealed that E6AP is extensively involved in the ubiquitin-mediated degradation of human papillomavirus E6-dependent substrates as a cellular E3 ubiquitin-protein ligase (PMID:16482544)
- These findings suggest that the silencing of astrin induce a p53-dependent apoptosis and has an additive effect on paclitaxel treatment. (PMID:16546135)
- Telomerase activity at both early and late passages, however, was dependent on E6AP expression, implying a continued reliance on E6 function for telomerase activity (PMID:16708385)
- detected 20 proteins that were differentially regulated by over-expression of human UBE3A in Drosophila (PMID:16905559)
- changes in the cellular milieu initiate E6AP-mediated proteasomal degradation of AIB1 and thus contribute to the control of steady-state levels of this protein in breast cancer cells. (PMID:16951183)
- proteolytic properties of human papillomavirus E6 proteins are mediated by interaction with E6-AP (PMID:17085449)
- A study was done of ubiquitin-dependent proteolysis of TH1L protein by E6-AP. (PMID:17131388)
- Findings indicate that HPV 16 E6 protein is required for the immortalization of tonsil epithelial cells and suggests that a mechanism related to the E6 PDZ motif plays a role in cell transformation of tonsil cells. (PMID:17657785)
- Angelman syndrome is a neurogenetic condition that includes sleep problems. It is caused by lack of expression of the UBE3A gene on the maternal chromosome 15q11-q13. (PMID:17765640)
- binding to E6AP is not necessary for E6 localization to or activation of the hTERT promoter and another activity of E6 is involved in hTERT activation. (PMID:17942561)
- E6-AP not only enhances the degradation of p53 but also regulates the neuronal cell growth. (PMID:18193166)
- E6-AP is a critical mediator of the neuronal response to misfolded polyglutamine proteins and represents a potential therapeutic target in the polyglutamine diseases. (PMID:18201976)
- These data suggest that complex formation between E6, E6AP, and NFX1-91 is a critical step in mediating telomerase activation, which may be one contributing factor to cellular life span extension during human betapapillomavirus infection. (PMID:18256157)
- The degradation of TSC2 is mediated by E6AP ubiquitin ligase. (PMID:18298802)
- We found a novel splice-site mutation of the UBE3A gene in a child with clinical and EEG features of Angelman syndrome. (PMID:18487518)
- Ubiquitin over-expression promotes the destabilization of the ubiquitin protein ligase E6AP, by a mechanism involving self-ubiquitination, and the stabilization of p53. (PMID:18612801)
- oncoprotein E6 inhibits hADA3 in cervical cancer cells and this process is E6AP-dependent. (PMID:19194825)
- Data suggest that E6AP may play a role in controlling the diverse functions of annexin A1 through the ubiquitin-proteasome pathway. (PMID:19204938)
- Novel UBE3A mutations causing Angleman syndrome: different parental origin for single nucleotide changes and multiple nucleotide deletions or insertions. (PMID:19213023)
- Results suggest that E6-AP functions as a cellular quality control ubiquitin ligase and, therefore, can be implicated not only in the pathogenesis of Angelman syndrome but also in the biology of neurodegenerative disorders involving protein aggregation. (PMID:19233847)
- Repression of E6 oncogene results in restoration of p53 and pRb suppressor pathways and induced apoptosis in HPV16-positive oropharyngeal squamous cell cancer cell lines. (PMID:19276448)
- E6AP is the prototype of the subfamily of E3 ligases that covalently bind ubiquitin and are characterized by a C-terminal of homologous to the E6AP C terminus domain. (PMID:19325566)
- Reduction of synaptic vesicle density in the hippocampi of UBE3A deficient mice may be implicated in the pathogenesis of Angelman syndrome. (PMID:19563863)
- These results demonstrate that the stability of E6 of both HPV-16 and HPV-18 is critically dependent upon the presence of E6AP. (PMID:19700180)
- identified in a large Tunisian pedigree a novel UBE3A frameshift mutation in exon 16 coding region, and we expect that the resulting UBE3A truncated protein in our patients is non-functional since the mutation implies the catalytic region of the enzyme (PMID:20034088)
- Regression analysis with a competitive binding model indicates that UbcH7 does not have enhanced affinity for E6AP. (PMID:20039703)
- Findings demonstrate the ability of TTP to act as a tumor suppressor by inhibiting the E6-AP pathway and indicate TTP loss to be a critical event during HPV-mediated cervical cancer carcinogenesis. (PMID:20157568)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | ube3a | ENSDARG00000055737 |
| mus_musculus | Ube3a | ENSMUSG00000025326 |
| rattus_norvegicus | Ube3a | ENSRNOG00000015734 |
| drosophila_melanogaster | Ube3a | FBGN0061469 |
Paralogs (24): HECW1 (ENSG00000002746), UBE3C (ENSG00000009335), NEDD4L (ENSG00000049759), NEDD4 (ENSG00000069869), ITCH (ENSG00000078747), HACE1 (ENSG00000085382), HUWE1 (ENSG00000086758), HECTD1 (ENSG00000092148), UBR5 (ENSG00000104517), SMURF2 (ENSG00000108854), AREL1 (ENSG00000119682), WWP1 (ENSG00000123124), HERC2 (ENSG00000128731), HECW2 (ENSG00000138411), HERC3 (ENSG00000138641), HERC6 (ENSG00000138642), HERC5 (ENSG00000138646), HERC4 (ENSG00000148634), UBE3B (ENSG00000151148), TRIP12 (ENSG00000153827), HECTD2 (ENSG00000165338), HECTD4 (ENSG00000173064), WWP2 (ENSG00000198373), SMURF1 (ENSG00000198742)
Protein
Protein identifiers
Ubiquitin-protein ligase E3A — Q05086 (reviewed: Q05086)
Alternative names: E6AP ubiquitin-protein ligase, HECT-type ubiquitin transferase E3A, Human papillomavirus E6-associated protein, Oncogenic protein-associated protein E6-AP, Renal carcinoma antigen NY-REN-54
All UniProt accessions (15): A0A0D9SEJ2, A0A0D9SES7, A0A0D9SF91, A0A0D9SFH3, A0A0D9SFU3, A0A0D9SG54, A0A0D9SG63, A0A0D9SG77, A0A0G2JQQ5, A0A1B0GTB3, A0A1B0GVL3, A0A6Q8PHE5, Q05086, Q9H2G0, S4R306
UniProt curated annotations — full annotation on UniProt →
Function. E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and transfers it to its substrates. Several substrates have been identified including the BMAL1, ARC, LAMTOR1, RAD23A and RAD23B, MCM7 (which is involved in DNA replication), annexin A1, the PML tumor suppressor, and the cell cycle regulator CDKN1B. Additionally, may function as a cellular quality control ubiquitin ligase by helping the degradation of the cytoplasmic misfolded proteins. Finally, UBE3A also promotes its own degradation in vivo. Plays an important role in the regulation of the circadian clock: involved in the ubiquitination of the core clock component BMAL1, leading to its proteasomal degradation. Acts as transcriptional coactivator of progesterone receptor PGR upon progesterone hormone activation. Acts as a regulator of synaptic development by mediating ubiquitination and degradation of ARC. Required for synaptic remodeling in neurons by mediating ubiquitination and degradation of LAMTOR1, thereby limiting mTORC1 signaling and activity-dependent synaptic remodeling. Synergizes with WBP2 in enhancing PGR activity. (Microbial infection) Catalyzes the high-risk human papilloma virus E6-mediated ubiquitination of p53/TP53, contributing to the neoplastic progression of cells infected by these viruses.
Subunit / interactions. The active form is probably a homotrimer. Binds UBQLN1 and UBQLN2. Interacts with the 26S proteasome. Interacts with BPY2. Interacts with HIF1AN, MAPK6 and NEURL4; interaction with MAPK6 may be mediated by NEURL4. Interacts with the proteasomal subunit PSMD4. Interacts with ESR1 and WBP2. Interacts with BMAL1. Interacts with ARC. (Microbial infection) Interacts with HCV core protein and targets it to degradation. (Microbial infection) Interacts with the E6 protein of the cancer-associated human papillomavirus types 16 and 18. The E6/E6-AP complex binds to and targets the p53/TP53 tumor-suppressor protein for ubiquitin-mediated proteolysis.
Subcellular location. Cytoplasm. Nucleus.
Post-translational modifications. Phosphorylation at Tyr-659 by ABL1 impairs E3 ligase activity and protects p53/TP53 from degradation in (HPV)-infected cells.
Disease relevance. Angelman syndrome (AS) [MIM:105830] A neurodevelopmental disorder characterized by severe motor and intellectual retardation, ataxia, frequent jerky limb movements and flapping of the arms and hands, hypotonia, seizures, absence of speech, frequent smiling and episodes of paroxysmal laughter, open-mouthed expression revealing the tongue. The disease is caused by variants affecting the gene represented in this entry.
Pathway. Protein modification; protein ubiquitination.
Miscellaneous. A cysteine residue is required for ubiquitin-thioester formation.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q05086-1 | II | yes |
| Q05086-2 | I | |
| Q05086-3 | III |
RefSeq proteins (28): NP_000453, NP_001341434, NP_001341435, NP_001341436, NP_001341437, NP_001341438, NP_001341440, NP_001341441, NP_001341442, NP_001341452, NP_001341455, NP_001341467, NP_001341468, NP_001341469, NP_001341470, NP_001341471, NP_001341472, NP_001341473, NP_001341474, NP_001341475, NP_001341476, NP_001341477, NP_001341478, NP_001341479, NP_001341480, NP_001361390, NP_570853, NP_570854* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000569 | HECT_dom | Domain |
| IPR017134 | UBE3A | Family |
| IPR032353 | AZUL | Domain |
| IPR035983 | Hect_E3_ubiquitin_ligase | Homologous_superfamily |
| IPR042556 | AZUL_sf | Homologous_superfamily |
| IPR044611 | E3A/B/C-like | Family |
Pfam: PF00632, PF16558
Enzyme classification (BRENDA):
- EC 2.3.2.26 — HECT-type E3 ubiquitin transferase (BRENDA: 14 organisms, 64 substrates, 19 inhibitors, 5 Km, 5 kcat entries)
Substrate kinetics (BRENDA)
1 substrates with measured Km, best-characterized 1. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| [UBC5B]-L-LYSINE | 0.0046–0.037 | 5 |
UniProt features (121 total): helix 46, sequence variant 29, strand 18, turn 9, sequence conflict 5, region of interest 3, modified residue 2, splice variant 2, compositionally biased region 2, chain 1, domain 1, zinc finger region 1, mutagenesis site 1, active site 1
Structure
Experimental structures (PDB)
25 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 6TGK | X-RAY DIFFRACTION | 1.3 |
| 6SJV | X-RAY DIFFRACTION | 2.03 |
| 4XR8 | X-RAY DIFFRACTION | 2.25 |
| 7QPB | X-RAY DIFFRACTION | 2.34 |
| 4GIZ | X-RAY DIFFRACTION | 2.55 |
| 9L3L | X-RAY DIFFRACTION | 2.59 |
| 1C4Z | X-RAY DIFFRACTION | 2.6 |
| 8JRN | ELECTRON MICROSCOPY | 2.6 |
| 1D5F | X-RAY DIFFRACTION | 2.8 |
| 6SLM | X-RAY DIFFRACTION | 2.8 |
| 8JRO | ELECTRON MICROSCOPY | 3.01 |
| 7Q41 | X-RAY DIFFRACTION | 3.01 |
| 8GCR | ELECTRON MICROSCOPY | 3.38 |
| 9CHT | ELECTRON MICROSCOPY | 3.54 |
| 8JRP | ELECTRON MICROSCOPY | 3.58 |
| 8R1F | ELECTRON MICROSCOPY | 3.67 |
| 8R1G | ELECTRON MICROSCOPY | 3.99 |
| 8JRQ | ELECTRON MICROSCOPY | 4.15 |
| 8JRR | ELECTRON MICROSCOPY | 4.35 |
| 1EQX | SOLUTION NMR | |
| 2KR1 | SOLUTION NMR | |
| 6U19 | SOLUTION NMR | |
| 8ENP | SOLUTION NMR | |
| 8EPT | SOLUTION NMR | |
| 9VG5 | SOLUTION NMR |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q05086-F1 | 81.42 | 0.52 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 843 (glycyl thioester intermediate)
Post-translational modifications (2): 659, 218
Mutagenesis-validated functional residues (1):
| Position | Phenotype |
|---|---|
| 750 | disrupt trimer formation, 50-fold reduction in e3 ligase activity. |
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-983168 | Antigen processing: Ubiquitination & Proteasome degradation |
MSigDB gene sets: 539 (showing top):
GOBP_CIRCADIAN_RHYTHM, GOBP_SINGLE_FERTILIZATION, BROWNE_HCMV_INFECTION_4HR_UP, PID_TELOMERASE_PATHWAY, REACTOME_ADAPTIVE_IMMUNE_SYSTEM, GOBP_CELLULAR_RESPONSE_TO_LIPID, REACTOME_CLASS_I_MHC_MEDIATED_ANTIGEN_PROCESSING_PRESENTATION, REACTOME_ANTIGEN_PROCESSING_UBIQUITINATION_PROTEASOME_DEGRADATION, TGCACTT_MIR519C_MIR519B_MIR519A, TTTGTAG_MIR520D, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_DN, GOBP_GROWTH, GOBP_MACROMOLECULE_CATABOLIC_PROCESS, GOBP_VESICLE_MEDIATED_TRANSPORT, WONG_PROTEASOME_GENE_MODULE
GO Biological Process (32): protein polyubiquitination (GO:0000209), ovarian follicle development (GO:0001541), proteolysis (GO:0006508), ubiquitin-dependent protein catabolic process (GO:0006511), brain development (GO:0007420), androgen receptor signaling pathway (GO:0030521), positive regulation of protein ubiquitination (GO:0031398), response to progesterone (GO:0032570), sperm entry (GO:0035037), regulation of circadian rhythm (GO:0042752), proteasome-mediated ubiquitin-dependent protein catabolic process (GO:0043161), positive regulation of transcription by RNA polymerase II (GO:0045944), regulation of synaptic plasticity (GO:0048167), rhythmic process (GO:0048511), progesterone receptor signaling pathway (GO:0050847), protein autoubiquitination (GO:0051865), positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (GO:0051897), prostate gland growth (GO:0060736), protein K48-linked ubiquitination (GO:0070936), negative regulation of TORC1 signaling (GO:1904262), obsolete positive regulation of Golgi lumen acidification (GO:1905528), regulation of ubiquitin-dependent protein catabolic process (GO:2000058), positive regulation of macromolecule metabolic process (GO:0010604), protein ubiquitination (GO:0016567), nuclear receptor-mediated steroid hormone signaling pathway (GO:0030518), cellular response to nutrient levels (GO:0031669), animal organ development (GO:0048513), system development (GO:0048731), modulation of chemical synaptic transmission (GO:0050804), regulation of primary metabolic process (GO:0080090), positive regulation of protein localization to lysosome (GO:0150032), positive regulation of TORC1 signaling (GO:1904263)
GO Molecular Function (8): transcription coactivator activity (GO:0003713), ubiquitin-protein transferase activity (GO:0004842), zinc ion binding (GO:0008270), ubiquitin protein ligase activity (GO:0061630), protein binding (GO:0005515), transferase activity (GO:0016740), ligase activity (GO:0016874), metal ion binding (GO:0046872)
GO Cellular Component (7): proteasome complex (GO:0000502), nucleus (GO:0005634), cytosol (GO:0005829), synaptic vesicle (GO:0008021), glutamatergic synapse (GO:0098978), postsynaptic cytosol (GO:0099524), cytoplasm (GO:0005737)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Class I MHC mediated antigen processing & presentation | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| protein ubiquitination | 4 |
| nuclear receptor-mediated steroid hormone signaling pathway | 2 |
| positive regulation of DNA-templated transcription | 2 |
| catalytic activity | 2 |
| cellular anatomical structure | 2 |
| female gonad development | 1 |
| anatomical structure development | 1 |
| protein metabolic process | 1 |
| modification-dependent protein catabolic process | 1 |
| central nervous system development | 1 |
| animal organ development | 1 |
| head development | 1 |
| regulation of protein ubiquitination | 1 |
| positive regulation of protein modification by small protein conjugation or removal | 1 |
| response to steroid hormone | 1 |
| response to ketone | 1 |
| endocytosis | 1 |
| single fertilization | 1 |
| circadian rhythm | 1 |
| regulation of biological process | 1 |
| ubiquitin-dependent protein catabolic process | 1 |
| proteasomal protein catabolic process | 1 |
| regulation of transcription by RNA polymerase II | 1 |
| transcription by RNA polymerase II | 1 |
| modulation of chemical synaptic transmission | 1 |
| regulation of biological quality | 1 |
| biological_process | 1 |
| phosphatidylinositol 3-kinase/protein kinase B signal transduction | 1 |
| regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction | 1 |
| positive regulation of intracellular signal transduction | 1 |
| developmental process involved in reproduction | 1 |
| prostate gland development | 1 |
| organ growth | 1 |
| protein polyubiquitination | 1 |
| negative regulation of TOR signaling | 1 |
| TORC1 signaling | 1 |
| regulation of TORC1 signaling | 1 |
| transcription coregulator activity | 1 |
| ubiquitin-like protein transferase activity | 1 |
| transition metal ion binding | 1 |
Protein interactions and networks
STRING
0 interactions, top by confidence (×1000):
IntAct
183 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| E6 | UBE3A | psi-mi:“MI:0915”(physical association) | 0.950 |
| UBE3A | E6 | psi-mi:“MI:0407”(direct interaction) | 0.950 |
| E6 | UBE3A | psi-mi:“MI:0407”(direct interaction) | 0.950 |
| UBE3A | E6 | psi-mi:“MI:0915”(physical association) | 0.950 |
| HIF1AN | APBA3 | psi-mi:“MI:0914”(association) | 0.850 |
| UCHL5 | PSMD11 | psi-mi:“MI:0914”(association) | 0.840 |
| TP53 | E6 | psi-mi:“MI:0407”(direct interaction) | 0.810 |
| TP53 | E6 | psi-mi:“MI:0915”(physical association) | 0.810 |
| E6 | UBE3A | psi-mi:“MI:0915”(physical association) | 0.800 |
| UBE3A | E6 | psi-mi:“MI:0915”(physical association) | 0.800 |
| UBE3A | E6 | psi-mi:“MI:0407”(direct interaction) | 0.800 |
| SMARCC2 | ARID1A | psi-mi:“MI:0914”(association) | 0.790 |
| UBE3A | TP53 | psi-mi:“MI:0915”(physical association) | 0.770 |
| UBE3A | TP53 | psi-mi:“MI:0914”(association) | 0.770 |
| PSMD4 | PSMD11 | psi-mi:“MI:0914”(association) | 0.750 |
| PSMD13 | PSMD11 | psi-mi:“MI:0914”(association) | 0.750 |
| PSMD4 | UBE3A | psi-mi:“MI:0915”(physical association) | 0.730 |
BioGRID (1014): UBE3A (Reconstituted Complex), UBE2D1 (Reconstituted Complex), UBE3A (Two-hybrid), UBE3A (Two-hybrid), UBE3A (Two-hybrid), AHSP (Two-hybrid), ASAP3 (Two-hybrid), ATG9A (Two-hybrid), KLHL38 (Two-hybrid), UBE2D1 (Reconstituted Complex), UBE2L3 (Reconstituted Complex), UBE2E1 (Reconstituted Complex), UBE3A (Biochemical Activity), UBE3A (Biochemical Activity), UBE3A (Affinity Capture-Western)
ESM2 similar proteins: A0A0G2K344, A0JM23, D3ZBM7, E1C656, F1M386, F1N6G5, F1PBJ0, F8W2M1, O02697, O08759, O14830, O35385, P0CI65, P32871, P42336, P42337, P42338, P48736, Q05086, Q15034, Q28BK1, Q3U0D9, Q3UMR0, Q5GLZ8, Q5PQN1, Q5RD78, Q5REW9, Q5U5R9, Q6AZT7, Q6DCL5, Q6PAV2, Q7TNH6, Q7Z494, Q8BTI9, Q8CDU6, Q8CHG5, Q8CHG7, Q8IVU3, Q8IYU2, Q8K4M9
Diamond homologs: A0A8C0NGY6, A1CQG2, A1D3C5, A2A5Z6, A2QQ28, A9JRZ0, B0XQ72, B8N7E5, D3ZBM7, D6C652, E1B7Q7, E1C656, F1LP64, F1N6G5, F8W2M1, G0S9J5, G5E870, H2LBU8, O00308, O08759, O13834, O14326, O15033, P39940, P40985, P46934, P46935, P46937, P46938, P51593, P53119, Q03280, Q05086, Q08CZ0, Q09291, Q0CCL1, Q14669, Q15034, Q15386, Q1K9C4
SIGNOR signaling
32 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| ABL1 | “down-regulates activity” | UBE3A | phosphorylation |
| UBE3A | “down-regulates quantity by destabilization” | PSMB1 | ubiquitination |
| UBE3A | “down-regulates quantity by destabilization” | PSMC2 | ubiquitination |
| UBE3A | “down-regulates quantity by destabilization” | PSMD2 | ubiquitination |
| UBE3A | “down-regulates quantity by destabilization” | PSMD7 | ubiquitination |
| UBE3A | “down-regulates quantity by destabilization” | ALDH1A2 | ubiquitination |
| UBE3A | “down-regulates activity” | “26S Proteasome” | ubiquitination |
| Ub:E2 | “up-regulates activity” | UBE3A | ubiquitination |
| UBE3A | “down-regulates quantity by destabilization” | TSC2 | ubiquitination |
| UBE3A | “down-regulates quantity by destabilization” | DLG4 | ubiquitination |
| UBE3A | “down-regulates quantity by destabilization” | UBE3A | ubiquitination |
| UBE3A | “down-regulates quantity by destabilization” | NELFCD | ubiquitination |
| UBE3A | “down-regulates quantity by destabilization” | SOX9 | ubiquitination |
| UBE3A | “down-regulates quantity by destabilization” | MCM7 | polyubiquitination |
| UBE3A | “down-regulates quantity by destabilization” | TP53 | polyubiquitination |
| UBE3A | “down-regulates quantity by destabilization” | NOL3 | ubiquitination |
| UBE3A | “up-regulates activity” | KCNN2 | ubiquitination |
| UBE3A | “down-regulates quantity” | EEF1E1 | ubiquitination |
| UBE3A | “down-regulates quantity” | TP53 | ubiquitination |
| PRKACA | “down-regulates activity” | UBE3A | phosphorylation |
| UBE3A | “down-regulates quantity by destabilization” | LAMTOR1 | ubiquitination |
| UBE3A | “down-regulates quantity by destabilization” | RAD23A | polyubiquitination |
| UBE3A | “down-regulates quantity by destabilization” | RAD23B | polyubiquitination |
| UBE3A | “down-regulates quantity by destabilization” | SCRIB | polyubiquitination |
| UBE3A | “down-regulates quantity by destabilization” | SIPA1L1 | polyubiquitination |
| UBE3A | “down-regulates quantity by destabilization” | PSMD4 | polyubiquitination |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 154 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Autodegradation of the E3 ubiquitin ligase COP1 | 12 | 31.2× | 4e-13 |
| Regulation of activated PAK-2p34 by proteasome mediated degradation | 11 | 30.0× | 3e-12 |
| AUF1 (hnRNP D0) binds and destabilizes mRNA | 12 | 29.2× | 5e-13 |
| FBXL7 down-regulates AURKA during mitotic entry and in early mitosis | 12 | 29.2× | 5e-13 |
| Vpu mediated degradation of CD4 | 11 | 28.6× | 3e-12 |
| Ubiquitin-dependent degradation of Cyclin D | 11 | 28.6× | 3e-12 |
| Negative regulation of NOTCH4 signaling | 12 | 28.0× | 7e-13 |
| Vif-mediated degradation of APOBEC3G | 11 | 27.4× | 5e-12 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| proteasome-mediated ubiquitin-dependent protein catabolic process | 23 | 8.9× | 1e-12 |
| ubiquitin-dependent protein catabolic process | 13 | 7.2× | 2e-05 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
43 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 8 |
| Likely pathogenic | 1 |
| Uncertain significance | 9 |
| Likely benign | 8 |
| Benign | 13 |
Top pathogenic / likely-pathogenic (9)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1069013 | NC_000015.9:g.(?25584273)(25650609_?)del | Pathogenic |
| 1075074 | NC_000015.9:g.(?25584273)(25650609_?)dup | Pathogenic |
| 2427202 | NC_000015.9:g.(?25615693)(25650609_?)del | Pathogenic |
| 2427203 | NC_000015.9:g.(?25584284)(25585395_?)del | Pathogenic |
| 253397 | GRCh37/hg19 15q11.2(chr15:25583931-25685400)x3 | Pathogenic |
| 30204 | UBE3A, 15-BP DEL/7-BP INS, NT3240 | Pathogenic |
| 3243748 | NC_000015.9:g.(?25584284)(25650609_?)del | Pathogenic |
| 831131 | NC_000015.10:g.(?25339137)(25405462_?)dup | Pathogenic |
| 816549 | GRCh37/hg19 15q11.2(chr15:25583840-25611877)x1 | Likely pathogenic |
SpliceAI
3146 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 15:25339255:AACCT:A | acceptor_loss | 1.0000 |
| 15:25339256:ACCTA:A | acceptor_loss | 1.0000 |
| 15:25339258:C:CA | acceptor_loss | 1.0000 |
| 15:25339259:T:A | acceptor_loss | 1.0000 |
| 15:25340083:A:AC | donor_gain | 1.0000 |
| 15:25340084:C:A | donor_loss | 1.0000 |
| 15:25340084:C:CC | donor_gain | 1.0000 |
| 15:25340084:CCTTT:C | donor_gain | 1.0000 |
| 15:25340225:CTCC:C | acceptor_gain | 1.0000 |
| 15:25340227:CC:C | acceptor_gain | 1.0000 |
| 15:25340228:CC:C | acceptor_gain | 1.0000 |
| 15:25340229:C:CC | acceptor_gain | 1.0000 |
| 15:25340229:CTAAT:C | acceptor_loss | 1.0000 |
| 15:25340230:T:G | acceptor_loss | 1.0000 |
| 15:25354423:GATT:G | acceptor_gain | 1.0000 |
| 15:25354425:TT:T | acceptor_gain | 1.0000 |
| 15:25354426:TC:T | acceptor_loss | 1.0000 |
| 15:25354427:C:CC | acceptor_gain | 1.0000 |
| 15:25354527:CCCGG:C | donor_gain | 1.0000 |
| 15:25355886:TATTA:T | donor_loss | 1.0000 |
| 15:25355888:TTAC:T | donor_loss | 1.0000 |
| 15:25355889:TA:T | donor_loss | 1.0000 |
| 15:25355890:A:AG | donor_loss | 1.0000 |
| 15:25355890:ACCTT:A | donor_gain | 1.0000 |
| 15:25355891:C:CA | donor_loss | 1.0000 |
| 15:25355891:CCTTC:C | donor_gain | 1.0000 |
| 15:25355894:T:A | donor_gain | 1.0000 |
| 15:25355922:A:AC | donor_gain | 1.0000 |
| 15:25356689:A:AC | donor_gain | 1.0000 |
| 15:25356690:C:CT | donor_gain | 1.0000 |
AlphaMissense
5800 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 15:25339149:A:C | F872L | 1.000 |
| 15:25339149:A:T | F872L | 1.000 |
| 15:25339150:A:C | F872C | 1.000 |
| 15:25339150:A:G | F872S | 1.000 |
| 15:25339151:A:C | F872V | 1.000 |
| 15:25339151:A:G | F872L | 1.000 |
| 15:25339151:A:T | F872I | 1.000 |
| 15:25339153:C:T | G871E | 1.000 |
| 15:25339154:C:G | G871R | 1.000 |
| 15:25339154:C:T | G871R | 1.000 |
| 15:25339171:G:T | A865D | 1.000 |
| 15:25339172:C:G | A865P | 1.000 |
| 15:25339192:A:G | L858P | 1.000 |
| 15:25339219:A:C | L849R | 1.000 |
| 15:25339219:A:G | L849P | 1.000 |
| 15:25339219:A:T | L849H | 1.000 |
| 15:25339225:A:C | L847R | 1.000 |
| 15:25339225:A:G | L847P | 1.000 |
| 15:25339225:A:T | L847H | 1.000 |
| 15:25339230:A:C | N845K | 1.000 |
| 15:25339230:A:T | N845K | 1.000 |
| 15:25339233:A:C | F844L | 1.000 |
| 15:25339233:A:T | F844L | 1.000 |
| 15:25339234:A:C | F844C | 1.000 |
| 15:25339234:A:G | F844S | 1.000 |
| 15:25339235:A:C | F844V | 1.000 |
| 15:25339235:A:G | F844L | 1.000 |
| 15:25339235:A:T | F844I | 1.000 |
| 15:25339236:G:C | C843W | 1.000 |
| 15:25339237:C:A | C843F | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000002425 (15:25345979 C>T), RS1000026408 (15:25338431 G>A), RS1000032565 (15:25361571 A>G), RS1000038033 (15:25425526 G>C,T), RS1000060879 (15:25428818 T>A,C), RS1000067015 (15:25385880 AAGTTTTAC>A), RS1000069871 (15:25391359 G>A), RS1000088623 (15:25425227 T>C), RS1000091776 (15:25429047 C>T), RS1000101094 (15:25410082 A>C,G), RS1000127333 (15:25399840 A>G), RS1000177704 (15:25396786 ATT>A,AT,ATTT,ATTTT), RS1000224388 (15:25344337 A>G), RS1000260924 (15:25350712 C>A), RS1000302995 (15:25393073 G>C)
Disease associations
OMIM: gene MIM:601623 | disease phenotypes: MIM:105830
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| Angelman syndrome | Definitive | Autosomal dominant |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| Angelman syndrome | Definitive | AD |
Mondo (1): Angelman syndrome (MONDO:0007113)
Orphanet (1): Angelman syndrome (Orphanet:72)
HPO phenotypes
98 total (30 of 98 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000154 | Wide mouth |
| HP:0000158 | Macroglossia |
| HP:0000248 | Brachycephaly |
| HP:0000256 | Macrocephaly |
| HP:0000286 | Epicanthus |
| HP:0000298 | Mask-like facies |
| HP:0000303 | Mandibular prognathia |
| HP:0000327 | Hypoplasia of the maxilla |
| HP:0000486 | Strabismus |
| HP:0000490 | Deeply set eye |
| HP:0000494 | Downslanted palpebral fissures |
| HP:0000545 | Myopia |
| HP:0000577 | Exotropia |
| HP:0000635 | Blue irides |
| HP:0000639 | Nystagmus |
| HP:0000687 | Widely spaced teeth |
| HP:0000708 | Atypical behavior |
| HP:0000710 | Hyperorality |
| HP:0000717 | Autism |
| HP:0000722 | Compulsive behaviors |
| HP:0000729 | Autistic behavior |
| HP:0000736 | Short attention span |
| HP:0000748 | Inappropriate laughter |
| HP:0000749 | Paroxysmal bursts of laughter |
| HP:0000750 | Delayed speech and language development |
| HP:0000752 | Hyperactivity |
| HP:0001010 | Hypopigmentation of the skin |
| HP:0001249 | Intellectual disability |
| HP:0001250 | Seizure |
GWAS associations
4 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000960_12 | Cardiac hypertrophy | 2.000000e-07 |
| GCST001762_375 | Obesity-related traits | 4.000000e-06 |
| GCST002786_1 | Gene methylation in lung tissue | 3.000000e-08 |
| GCST002786_3 | Gene methylation in lung tissue | 3.000000e-09 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0002503 | cardiac hypertrophy |
| EFO:0006959 | gene methylation measurement |
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D017204 | Angelman Syndrome | C10.228.662.075; C16.131.077.095; C16.131.260.040; C16.320.180.040; C16.320.447.250 |
| C531619 | Happy puppet syndrome (formerly) (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL6067133 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
2 potent at pChembl≥5 of 2 total, top 2 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 5.17 | Kd | 6777 | nM | CHEMBL3752910 |
| 5.16 | ED50 | 6962 | nM | CHEMBL3752910 |
PubChem BioAssay actives
1 with measured affinity, of 2 total; 1 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-methyl-3-[(1-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2149713: Binding affinity to human UBE3A incubated for 45 mins by Kinobead based pull down assay | kd | 6.7775 | uM |
CTD chemical–gene interactions
51 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | decreases expression, affects cotreatment, increases abundance, increases expression | 3 |
| Tretinoin | decreases expression, increases expression | 3 |
| bisphenol S | affects binding, affects folding, decreases reaction, decreases methylation | 2 |
| Estradiol | affects binding, increases reaction | 2 |
| aristolochic acid I | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| alpha-pinene | increases abundance, affects cotreatment, decreases expression | 1 |
| bisphenol A | affects binding, affects folding, decreases reaction | 1 |
| trichostatin A | affects expression | 1 |
| beta-lapachone | increases expression | 1 |
| arsenite | affects binding, decreases reaction | 1 |
| cobaltous chloride | increases expression | 1 |
| alpha-cobratoxin | decreases expression, decreases reaction | 1 |
| manganese chloride | affects cotreatment, increases abundance, increases expression | 1 |
| benzo(e)pyrene | decreases methylation | 1 |
| methacrylaldehyde | affects cotreatment, decreases expression, increases abundance | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| 2-palmitoylglycerol | increases expression | 1 |
| 7,3’-dihydroxy-4’-methoxyisoflavone | increases expression | 1 |
| K 7174 | increases expression | 1 |
| jinfukang | decreases expression | 1 |
| bisphenol AF | decreases reaction, affects binding, affects folding | 1 |
| Resveratrol | affects cotreatment, increases expression | 1 |
| Temozolomide | decreases expression | 1 |
| Arsenic Trioxide | increases expression | 1 |
| Acrolein | affects cotreatment, decreases expression, increases abundance | 1 |
| Air Pollutants | decreases expression, increases abundance, affects cotreatment | 1 |
| Arsenic | affects cotreatment, increases abundance, increases expression | 1 |
| Atrazine | decreases expression | 1 |
ChEMBL screening assays
1 unique, capped per target: 1 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL5652755 | Binding | Binding affinity to human UBE3A incubated for 45 mins by Kinobead based pull down assay | NVP-BHG712: Effects of Regioisomers on the Affinity and Selectivity toward the EPHrin Family. — ChemMedChem |
Cellosaurus cell lines
10 cell lines: 5 cancer cell line, 3 transformed cell line, 1 induced pluripotent stem cell, 1 telomerase immortalized cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_AY98 | GM24206 | Transformed cell line | Male |
| CVCL_AY99 | GM24207 | Transformed cell line | Female |
| CVCL_C0J8 | WMUi032-A | Induced pluripotent stem cell | Female |
| CVCL_C3KN | N/Tert-1 UBE3AI | Telomerase immortalized cell line | Male |
| CVCL_D1UT | Abcam U-87MG UBE3A KO | Cancer cell line | Male |
| CVCL_D9VA | Ubigene HEK293 UBE3A KO | Transformed cell line | Female |
| CVCL_E1J0 | HyCyte A-549 KO-hUBE3A | Cancer cell line | Male |
| CVCL_E1M9 | HyCyte NCI-H1299 KO-hUBE3A | Cancer cell line | Male |
| CVCL_TV97 | HAP1 UBE3A (-) 1 | Cancer cell line | Male |
| CVCL_XU87 | HAP1 UBE3A (-) 2 | Cancer cell line | Male |
Clinical trials (associated diseases)
49 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT02893254 | PHASE3 | COMPLETED | Efficacy and Safety of IBI303 in Adult Patients With Active Ankylosing Spondylitis |
| NCT03882918 | PHASE3 | TERMINATED | An Open-Label Study to Evaluate the Long-Term Safety, Tolerability, and Efficacy of OV101 in Individuals With Angelman Syndrome |
| NCT06415344 | PHASE3 | ENROLLING_BY_INVITATION | Long-term Extension of GTX-102 in Angelman Syndrome |
| NCT06617429 | PHASE3 | ACTIVE_NOT_RECRUITING | Phase 3 Efficacy and Safety Study of GTX-102 in Pediatric Subjects With Angelman Syndrome (AS) |
| NCT06914609 | PHASE3 | RECRUITING | REVEAL: A Phase 3 Study of ION582 in Angelman Syndrome |
| NCT07605429 | PHASE3 | NOT_YET_RECRUITING | Phase III Clinical Study of Rugonersen in Angelman Syndrome. |
| NCT02056665 | PHASE2 | COMPLETED | Study to Evaluate the Efficacy and Safety of Minocycline in Angelman Syndrome |
| NCT02996305 | PHASE2 | COMPLETED | A Study in Adults and Adolescents With Angelman Syndrome (STARS) |
| NCT05011851 | PHASE2 | COMPLETED | An Open-Label Study of the Safety, Tolerability, and Pharmacokinetics of Oral NNZ-2591 in Angelman Syndrome |
| NCT05630066 | PHASE2 | COMPLETED | A Study to Investigate the Pharmacokinetics (PK) and Safety and to Provide Proof of Mechanism of Alogabat in Children and Adolescents Aged 5-17 Years With Angelman Syndrome (AS) With Deletion Genotype. |
| NCT07157254 | PHASE2 | RECRUITING | A Safety and Efficacy Study of GTX-102 in Subjects With Deletion- or Nondeletion-type Angelman Syndrome (AS) |
| NCT00829439 | PHASE1 | COMPLETED | Study on Tolerability of Levodopa/Carbidopa in Children With Angelman Syndrome |
| NCT03109756 | PHASE1 | COMPLETED | Single Dose Pharmacokinetic (PK) Study |
| NCT04428281 | PHASE1 | COMPLETED | A Study to Investigate the Safety, Tolerability, Pharmacokinetics (PK) and Pharmacodynamics (PD) of RO7248824 in Participants With Angelman Syndrome (AS) |
| NCT04863794 | PHASE1 | COMPLETED | A Study To Assess Distribution Of RO7248824 In The Central Nervous System Following Single Intrathecal Doses Of [89zr] Labeled RO7248824 In Healthy Male Participants |
| NCT01281475 | PHASE2/PHASE3 | COMPLETED | A Trial of Levodopa in Angelman Syndrome |
| NCT04259281 | PHASE1/PHASE2 | COMPLETED | A Study of the Safety and Tolerability of GTX-102 in Children With Angelman Syndrome |
| NCT05127226 | PHASE1/PHASE2 | RECRUITING | HALOS: A Safety, Tolerability, Pharmacokinetics and Pharmacodynamics Study of Multiple Ascending Doses of ION582 in Participants With Angelman Syndrome |
| NCT07181837 | PHASE1/PHASE2 | RECRUITING | A Phase 1/2 Study of the Safety and Efficacy of MVX-220 in Angelman Syndrome |
| NCT04103333 | EARLY_PHASE1 | COMPLETED | Angelman Syndrome (AS) Biomarker Study |
| NCT00004351 | Not specified | COMPLETED | Study of Phenotype and Genotype Correlations in Patients With Contiguous Gene Deletion Syndromes |
| NCT00296764 | Not specified | COMPLETED | Characterization of Angelman Syndrome |
| NCT00348933 | Not specified | COMPLETED | Dietary Supplements for the Treatment of Angelman Syndrome |
| NCT01531582 | Not specified | COMPLETED | Minocycline in the Treatment of Angelman Syndrome |
| NCT02381457 | Not specified | COMPLETED | SNP-based Microdeletion and Aneuploidy RegisTry (SMART) |
| NCT02670694 | Not specified | COMPLETED | Sleep Abnormalities in Rare Genetic Disorders: AS, RTT, and PW |
| NCT03235037 | Not specified | COMPLETED | Clinical Trial of Levodopa/Carbidopa ( Sinemet) Therapy in Angel Man Syndrome |
| NCT03358823 | Not specified | COMPLETED | Study on the Brain Network of Angelman Syndrome |
| NCT03644693 | Not specified | COMPLETED | Nutritional Formulation for Angelman Syndrome |
| NCT03650569 | Not specified | COMPLETED | Italian Angelman Syndrome Registry |
| NCT03655223 | Not specified | ENROLLING_BY_INVITATION | Early Check: Expanded Screening in Newborns |
| NCT03836300 | Not specified | ENROLLING_BY_INVITATION | Parent and Infant Inter(X)Action Intervention (PIXI) |
| NCT04392596 | Not specified | COMPLETED | Study of Bone Mineral Density and Trabecular Bone Score in Patients With Ankylosing Spondylitis |
| NCT04507997 | Not specified | RECRUITING | Angelman Syndrome Natural History Study |
| NCT04768803 | Not specified | UNKNOWN | Ghrelin in Patients With a Rare Disease Associated With Intellectual Disability, and Hyperphagia, and/or Overweight, and/or Obesity |
| NCT05100810 | Not specified | UNKNOWN | Angelman Syndrome Natural History Study-FAST UK |
| NCT05293184 | Not specified | RECRUITING | The Global Angelman Syndrome Registry |
| NCT05637697 | Not specified | COMPLETED | Angelman Syndrome Video Assessment (ASVA) Source Material Study |
| NCT05783791 | Not specified | COMPLETED | Development of a Newborn Screening Assay for Angelman Syndrome and Prader-Willi Syndrome |
| NCT05945576 | Not specified | RECRUITING | IDMet (RaDiCo Cohort) (RaDiCo-IDMet) |
Related Atlas pages
- Associated diseases: Angelman syndrome
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Angelman syndrome