UBOX5
gene geneOn this page
Also known as UIP5KIAA0860Ubce7ip5RNF37
Summary
UBOX5 (U-box domain containing 5, HGNC:17777) is a protein-coding gene on chromosome 20p13, encoding RING finger protein 37 (O94941). May have a ubiquitin-protein ligase activity acting as an E3 ubiquitin-protein ligase or as a ubiquitin-ubiquitin ligase promoting elongation of ubiquitin chains on substrates.
This gene encodes a U-box domain containing protein. The encoded protein interacts with E2 enzymes and may play a role in the ubiquitination pathway. Alternate splicing results in multiple transcript variants.
Source: NCBI Gene 22888 — RefSeq curated summary.
At a glance
- GWAS associations: 5
- Clinical variants (ClinVar): 84 total — 1 pathogenic
- MANE Select transcript:
NM_014948
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:17777 |
| Approved symbol | UBOX5 |
| Name | U-box domain containing 5 |
| Location | 20p13 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | UIP5, KIAA0860, Ubce7ip5, RNF37 |
| Ensembl gene | ENSG00000185019 |
| Ensembl biotype | protein_coding |
| OMIM | 619675 |
| Entrez | 22888 |
Gene structure
Transcript identifiers
Ensembl transcripts: 4 — 4 protein_coding
ENST00000217173, ENST00000348031, ENST00000449731, ENST00000896614
RefSeq mRNA: 3 — MANE Select: NM_014948
NM_001267584, NM_014948, NM_199415
CCDS: CCDS13046, CCDS13047
Canonical transcript exons
ENST00000217173 — 5 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001343747 | 3107573 | 3110314 |
| ENSE00001343760 | 3123312 | 3123406 |
| ENSE00001785824 | 3115305 | 3115466 |
| ENSE00002197928 | 3121384 | 3122584 |
| ENSE00003844415 | 3159766 | 3159865 |
Expression profiles
Bgee: expression breadth ubiquitous, 222 present calls, max score 90.11.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 23.9411 / max 193.3725, expressed in 1812 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 186124 | 23.9411 | 1812 |
| 186123 | 2.1369 | 1256 |
Top tissues by expression
278 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| olfactory bulb | UBERON:0002264 | 90.11 | gold quality |
| type B pancreatic cell | CL:0000169 | 88.24 | gold quality |
| diaphragm | UBERON:0001103 | 84.55 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 83.55 | gold quality |
| parotid gland | UBERON:0001831 | 82.15 | silver quality |
| gastrocnemius | UBERON:0001388 | 81.77 | gold quality |
| muscle of leg | UBERON:0001383 | 80.98 | gold quality |
| muscle organ | UBERON:0001630 | 80.46 | gold quality |
| skeletal muscle organ | UBERON:0014892 | 80.46 | gold quality |
| lateral nuclear group of thalamus | UBERON:0002736 | 79.73 | silver quality |
| vastus lateralis | UBERON:0001379 | 79.52 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 79.50 | gold quality |
| quadriceps femoris | UBERON:0001377 | 79.29 | gold quality |
| triceps brachii | UBERON:0001509 | 79.27 | gold quality |
| gluteal muscle | UBERON:0002000 | 79.12 | gold quality |
| adrenal tissue | UBERON:0018303 | 78.88 | gold quality |
| cervix squamous epithelium | UBERON:0006922 | 78.86 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 78.76 | gold quality |
| blood | UBERON:0000178 | 78.09 | gold quality |
| CA1 field of hippocampus | UBERON:0003881 | 78.04 | silver quality |
| epithelial cell of pancreas | CL:0000083 | 78.03 | gold quality |
| popliteal artery | UBERON:0002250 | 78.01 | gold quality |
| tibial artery | UBERON:0007610 | 77.99 | gold quality |
| muscle tissue | UBERON:0002385 | 77.97 | gold quality |
| inferior olivary complex | UBERON:0002127 | 77.44 | silver quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 77.25 | gold quality |
| middle temporal gyrus | UBERON:0002771 | 77.01 | silver quality |
| stromal cell of endometrium | CL:0002255 | 76.96 | gold quality |
| leukocyte | CL:0000738 | 76.90 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 76.88 | silver quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-100618 | yes | 272.42 |
| E-ANND-3 | yes | 3.22 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
69 targeting UBOX5, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-6748-5P | 100.00 | 65.81 | 1057 |
| HSA-MIR-4283 | 100.00 | 66.42 | 2097 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-4692 | 100.00 | 67.32 | 2066 |
| HSA-MIR-4500 | 99.99 | 72.72 | 2367 |
| HSA-MIR-545-3P | 99.95 | 70.74 | 2783 |
| HSA-MIR-3119 | 99.92 | 71.34 | 2390 |
| HSA-MIR-4731-5P | 99.89 | 67.23 | 2537 |
| HSA-MIR-6780A-5P | 99.88 | 66.69 | 2776 |
| HSA-MIR-548AJ-5P | 99.78 | 71.12 | 3085 |
| HSA-MIR-548F-5P | 99.78 | 71.02 | 3093 |
| HSA-MIR-548G-5P | 99.78 | 71.12 | 3085 |
| HSA-MIR-548X-5P | 99.78 | 71.12 | 3085 |
| HSA-MIR-1273H-5P | 99.77 | 66.32 | 2471 |
| HSA-MIR-4319 | 99.76 | 69.83 | 2586 |
| HSA-MIR-30B-3P | 99.70 | 65.76 | 2325 |
| HSA-MIR-3689A-3P | 99.70 | 65.73 | 2306 |
| HSA-MIR-3689B-3P | 99.70 | 65.71 | 2311 |
| HSA-MIR-3689C | 99.70 | 65.71 | 2311 |
| HSA-MIR-6779-5P | 99.70 | 65.76 | 2363 |
| HSA-MIR-1283 | 99.69 | 72.42 | 3009 |
| HSA-MIR-3147 | 99.52 | 66.34 | 388 |
| HSA-MIR-3128 | 99.50 | 67.85 | 1258 |
| HSA-MIR-1207-5P | 99.49 | 69.11 | 2983 |
| HSA-MIR-6722-3P | 99.45 | 67.62 | 1919 |
| HSA-MIR-135A-5P | 99.36 | 71.85 | 1601 |
| HSA-MIR-135B-5P | 99.36 | 71.63 | 1613 |
| HSA-MIR-3922-3P | 99.25 | 64.96 | 1136 |
| HSA-MIR-3176 | 99.25 | 64.35 | 954 |
| HSA-MIR-6734-3P | 99.15 | 66.27 | 1627 |
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | ubox5 | ENSDARG00000058563 |
| mus_musculus | Ubox5 | ENSMUSG00000027300 |
| rattus_norvegicus | Ubox5 | ENSRNOG00000021230 |
| drosophila_melanogaster | CG2218 | FBGN0039767 |
Protein
Protein identifiers
RING finger protein 37 — O94941 (reviewed: O94941)
Alternative names: RING-type E3 ubiquitin transferase RNF37, U-box domain-containing protein 5, UbcM4-interacting protein 5, Ubiquitin-conjugating enzyme 7-interacting protein 5
All UniProt accessions (2): O94941, A2A2Q6
UniProt curated annotations — full annotation on UniProt →
Function. May have a ubiquitin-protein ligase activity acting as an E3 ubiquitin-protein ligase or as a ubiquitin-ubiquitin ligase promoting elongation of ubiquitin chains on substrates.
Subunit / interactions. Interacts with UBE2L3. Interacts with VCP.
Subcellular location. Nucleus.
Tissue specificity. Expressed in liver, heart, brain, kidney and testis.
Domain organisation. The U-box domain mediates interaction with E2 ubiquitin ligases and is required for the ubiquitin-protein ligase activity.
Pathway. Protein modification; protein ubiquitination.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| O94941-1 | 1 | yes |
| O94941-2 | 2 |
RefSeq proteins (3): NP_001254513, NP_055763, NP_955447 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001841 | Znf_RING | Domain |
| IPR003613 | Ubox_domain | Domain |
| IPR013083 | Znf_RING/FYVE/PHD | Homologous_superfamily |
| IPR017907 | Znf_RING_CS | Conserved_site |
| IPR039847 | Ubox5 | Family |
| IPR039925 | RNF37_RING-Ubox | Domain |
| IPR045696 | Ubox5_N | Domain |
Pfam: PF04564, PF14634, PF19318
UniProt features (7 total): sequence variant 2, chain 1, domain 1, zinc finger region 1, modified residue 1, splice variant 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-O94941-F1 | 71.33 | 0.36 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (1): 451
Function
Pathways and Gene Ontology
Reactome pathways
4 pathways
| ID | Pathway |
|---|---|
| R-HSA-983168 | Antigen processing: Ubiquitination & Proteasome degradation |
| R-HSA-1280218 | Adaptive Immune System |
| R-HSA-168256 | Immune System |
| R-HSA-983169 | Class I MHC mediated antigen processing & presentation |
MSigDB gene sets: 78 (showing top):
GSE45365_NK_CELL_VS_CD8_TCELL_DN, REACTOME_ADAPTIVE_IMMUNE_SYSTEM, REACTOME_CLASS_I_MHC_MEDIATED_ANTIGEN_PROCESSING_PRESENTATION, REACTOME_ANTIGEN_PROCESSING_UBIQUITINATION_PROTEASOME_DEGRADATION, AAGCCAT_MIR135A_MIR135B, GROSS_HYPOXIA_VIA_ELK3_UP, GROSS_HYPOXIA_VIA_ELK3_ONLY_DN, GOBP_POST_TRANSLATIONAL_PROTEIN_MODIFICATION, GOBP_PROTEIN_POLYUBIQUITINATION, KEGG_UBIQUITIN_MEDIATED_PROTEOLYSIS, GOCC_NUCLEAR_BODY, GOMF_UBIQUITIN_UBIQUITIN_LIGASE_ACTIVITY, GOMF_ACYLTRANSFERASE_ACTIVITY, GOMF_AMINOACYLTRANSFERASE_ACTIVITY, GOMF_UBIQUITIN_LIKE_PROTEIN_LIGASE_BINDING
GO Biological Process (2): protein polyubiquitination (GO:0000209), protein ubiquitination (GO:0016567)
GO Molecular Function (8): zinc ion binding (GO:0008270), ubiquitin protein ligase binding (GO:0031625), ubiquitin-ubiquitin ligase activity (GO:0034450), ubiquitin-protein transferase activity (GO:0004842), protein binding (GO:0005515), transferase activity (GO:0016740), metal ion binding (GO:0046872), ubiquitin protein ligase activity (GO:0061630)
GO Cellular Component (4): nucleus (GO:0005634), nucleoplasm (GO:0005654), focal adhesion (GO:0005925), nuclear body (GO:0016604)
Reactome top-level categories
Rollup of top-3 pathways:
| Category | Pathways |
|---|---|
| Class I MHC mediated antigen processing & presentation | 1 |
| Immune System | 1 |
| Adaptive Immune System | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| protein ubiquitination | 1 |
| protein modification by small protein conjugation | 1 |
| transition metal ion binding | 1 |
| ubiquitin-like protein ligase binding | 1 |
| ubiquitin protein ligase activity | 1 |
| ubiquitin-like protein transferase activity | 1 |
| binding | 1 |
| catalytic activity | 1 |
| cation binding | 1 |
| ubiquitin-protein transferase activity | 1 |
| ubiquitin-like protein ligase activity | 1 |
| intracellular membrane-bounded organelle | 1 |
| nuclear lumen | 1 |
| cellular anatomical structure | 1 |
| cell-substrate junction | 1 |
| nucleoplasm | 1 |
| intracellular membraneless organelle | 1 |
Protein interactions and networks
STRING
1277 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| UBOX5 | LZTS3 | O60299 | 619 |
| UBOX5 | PTPRA | P18433 | 573 |
| UBOX5 | SH2D4B | Q5SQS7 | 535 |
| UBOX5 | ZNF367 | Q7RTV3 | 529 |
| UBOX5 | FBXO39 | Q8N4B4 | 509 |
| UBOX5 | SMYD1 | Q8NB12 | 505 |
| UBOX5 | VCP | P55072 | 504 |
| UBOX5 | RNF215 | Q9Y6U7 | 504 |
| UBOX5 | UBE2U | Q5VVX9 | 492 |
| UBOX5 | CLRN3 | Q8NCR9 | 481 |
| UBOX5 | GNRH2 | O43555 | 478 |
| UBOX5 | UBR1 | Q8IWV7 | 475 |
| UBOX5 | RNF24 | Q9Y225 | 475 |
| UBOX5 | KCTD9 | Q7L273 | 472 |
| UBOX5 | GPRIN3 | Q6ZVF9 | 459 |
IntAct
43 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| UBOX5 | MLH1 | psi-mi:“MI:0915”(physical association) | 0.850 |
| MLH1 | UBOX5 | psi-mi:“MI:0915”(physical association) | 0.850 |
| VCP | UBOX5 | psi-mi:“MI:0915”(physical association) | 0.720 |
| UBOX5 | VCP | psi-mi:“MI:0915”(physical association) | 0.720 |
| UBOX5 | psi-mi:“MI:0915”(physical association) | 0.560 | |
| UBOX5 | ATXN1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| UBOX5 | TARDBP | psi-mi:“MI:0915”(physical association) | 0.560 |
| UBE2L3 | UBOX5 | psi-mi:“MI:0915”(physical association) | 0.550 |
| UBE2L3 | UBOX5 | psi-mi:“MI:0914”(association) | 0.550 |
| EMILIN1 | METTL15 | psi-mi:“MI:0914”(association) | 0.530 |
| UBOX5 | HSPA2 | psi-mi:“MI:0915”(physical association) | 0.400 |
| HIP2 | UBOX5 | psi-mi:“MI:0915”(physical association) | 0.370 |
| UBE2D1 | UBOX5 | psi-mi:“MI:0915”(physical association) | 0.370 |
| UBOX5 | UBE2D2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| UBOX5 | UBE2D3 | psi-mi:“MI:0915”(physical association) | 0.370 |
| UBE2H | UBOX5 | psi-mi:“MI:0915”(physical association) | 0.370 |
BioGRID (34): UBOX5 (Two-hybrid), UBOX5 (Biochemical Activity), UBE2D3 (Reconstituted Complex), UBOX5 (Two-hybrid), UBOX5 (Two-hybrid), UBOX5 (Affinity Capture-Western), UBE2L3 (Reconstituted Complex), UBE2L3 (Two-hybrid), UBOX5 (Two-hybrid), UBOX5 (Two-hybrid), UBOX5 (Affinity Capture-MS), UBOX5 (Affinity Capture-MS), HSPA2 (Affinity Capture-MS), UBOX5 (Affinity Capture-MS), UBOX5 (Affinity Capture-MS)
ESM2 similar proteins: A0A1L8GLK3, A0A974CYQ5, A5WW08, D2HNY3, D2HWM5, E7F6T8, F1ND48, O15040, O54714, O70260, O94941, P28715, P35658, P35689, P55265, P97432, Q14596, Q3TLR7, Q5E9J6, Q5F479, Q5FWP4, Q5NVC7, Q5RC94, Q5RF77, Q5RHI5, Q5ZJW8, Q66JG1, Q69ZT1, Q6AYH3, Q6P256, Q6PCD5, Q76CY8, Q7TPQ3, Q80U93, Q810L3, Q8CBW4, Q8CIK8, Q8CIN9, Q8K2L8, Q8WZ73
Diamond homologs: O94941, Q09349, Q925F4, O95155, Q9ES00
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| Ub:E2 | “up-regulates activity” | UBOX5 | ubiquitination |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 21 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| TICAM1, RIP1-mediated IKK complex recruitment | 5 | 187.8× | 1e-09 |
| IKK complex recruitment mediated by RIP1 | 5 | 155.2× | 3e-09 |
| Synthesis of active ubiquitin: roles of E1 and E2 enzymes | 6 | 138.2× | 1e-10 |
| E3 ubiquitin ligases ubiquitinate target proteins | 6 | 72.6× | 3e-09 |
| Antigen processing: Ubiquitination & Proteasome degradation | 11 | 25.6× | 2e-12 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| protein K11-linked ubiquitination | 6 | 117.6× | 8e-10 |
| protein K48-linked ubiquitination | 7 | 59.0× | 1e-09 |
| protein polyubiquitination | 9 | 51.9× | 8e-12 |
| ubiquitin-dependent protein catabolic process | 8 | 29.7× | 6e-09 |
| protein ubiquitination | 8 | 16.6× | 5e-07 |
| proteasome-mediated ubiquitin-dependent protein catabolic process | 5 | 13.0× | 8e-04 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
84 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 0 |
| Uncertain significance | 68 |
| Likely benign | 5 |
| Benign | 1 |
Top pathogenic / likely-pathogenic (1)
| Variant ID | HGVS | Classification |
|---|---|---|
| 3899913 | NM_021826.5(FASTKD5):c.1901T>C (p.Leu634Pro) | Pathogenic |
SpliceAI
1685 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 20:3123307:TTTA:T | donor_loss | 1.0000 |
| 20:3123308:TTA:T | donor_loss | 1.0000 |
| 20:3123309:TA:T | donor_loss | 1.0000 |
| 20:3123403:CAGC:C | acceptor_gain | 1.0000 |
| 20:3123405:GC:G | acceptor_gain | 1.0000 |
| 20:3123406:CC:C | acceptor_gain | 1.0000 |
| 20:3123407:C:CC | acceptor_gain | 1.0000 |
| 20:3123407:C:T | acceptor_gain | 1.0000 |
| 20:3123408:T:C | acceptor_gain | 1.0000 |
| 20:3123408:T:TC | acceptor_gain | 1.0000 |
| 20:3149259:TA:T | acceptor_gain | 1.0000 |
| 20:3149261:C:CC | acceptor_gain | 1.0000 |
| 20:3159761:CTCA:C | donor_loss | 1.0000 |
| 20:3159762:TCA:T | donor_loss | 1.0000 |
| 20:3159763:CA:C | donor_loss | 1.0000 |
| 20:3159765:C:CT | donor_loss | 1.0000 |
| 20:3123402:GCAGC:G | acceptor_gain | 0.9900 |
| 20:3123403:CAGCC:C | acceptor_gain | 0.9900 |
| 20:3123404:AGC:A | acceptor_gain | 0.9900 |
| 20:3159764:A:AC | donor_gain | 0.9900 |
| 20:3159765:C:CC | donor_gain | 0.9900 |
| 20:3110325:A:T | acceptor_gain | 0.9800 |
| 20:3115339:C:CA | donor_gain | 0.9800 |
| 20:3115509:C:CT | acceptor_gain | 0.9800 |
| 20:3122583:ATCT:A | acceptor_loss | 0.9800 |
| 20:3122584:TCTA:T | acceptor_loss | 0.9800 |
| 20:3122585:C:CC | acceptor_gain | 0.9800 |
| 20:3122585:C:T | acceptor_loss | 0.9800 |
| 20:3122586:T:G | acceptor_loss | 0.9800 |
| 20:3123306:GTTTA:G | donor_loss | 0.9800 |
AlphaMissense
3528 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 20:3121737:C:G | R301P | 0.997 |
| 20:3121806:A:G | L278P | 0.997 |
| 20:3121725:T:C | D305G | 0.996 |
| 20:3121850:G:C | F263L | 0.996 |
| 20:3121850:G:T | F263L | 0.996 |
| 20:3121851:A:G | F263S | 0.996 |
| 20:3121852:A:G | F263L | 0.996 |
| 20:3121718:G:C | F307L | 0.995 |
| 20:3121718:G:T | F307L | 0.995 |
| 20:3121720:A:G | F307L | 0.995 |
| 20:3122055:C:T | G195D | 0.995 |
| 20:3121773:A:G | L289P | 0.994 |
| 20:3121788:A:T | I284N | 0.994 |
| 20:3121806:A:T | L278Q | 0.994 |
| 20:3122056:C:G | G195R | 0.994 |
| 20:3121806:A:C | L278R | 0.993 |
| 20:3121750:C:G | A297P | 0.992 |
| 20:3121839:A:T | I267N | 0.992 |
| 20:3122501:G:C | F46L | 0.992 |
| 20:3122501:G:T | F46L | 0.992 |
| 20:3122503:A:G | F46L | 0.992 |
| 20:3122517:A:G | F41S | 0.992 |
| 20:3122553:A:G | L29P | 0.992 |
| 20:3121664:C:A | K325N | 0.991 |
| 20:3121664:C:G | K325N | 0.991 |
| 20:3121719:A:G | F307S | 0.991 |
| 20:3121744:A:G | W299R | 0.991 |
| 20:3121744:A:T | W299R | 0.991 |
| 20:3122061:A:T | V193E | 0.991 |
| 20:3122475:A:T | V55D | 0.991 |
dbSNP variants (sampled 300 via entrez): RS1000005551 (20:3119462 G>A,T), RS1000098150 (20:3137239 C>G), RS1000210640 (20:3130469 C>T), RS1000276147 (20:3126651 G>A), RS1000331277 (20:3139337 A>G), RS1000350120 (20:3160480 T>TA), RS1000456827 (20:3124616 G>A), RS1000485952 (20:3119810 C>A,T), RS1000555515 (20:3137544 C>A), RS1000703270 (20:3138983 A>G), RS1000788867 (20:3126676 A>G), RS1000819023 (20:3112510 C>T), RS1000828755 (20:3112821 C>T), RS1000860237 (20:3113920 G>A), RS1000860442 (20:3157154 G>C)
Disease associations
OMIM: gene MIM:619675 | disease phenotypes: MIM:256000, MIM:621431
GenCC curated gene-disease
Mondo (2): Leigh syndrome (MONDO:0009723), mitochondrial complex IV deficiency, nuclear type 24 (MONDO:0980755)
Orphanet (1): Leigh syndrome (Orphanet:506)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
5 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST003542_168 | Night sleep phenotypes | 9.000000e-06 |
| GCST009523_67 | Household income | 4.000000e-09 |
| GCST009523_68 | Household income | 1.000000e-08 |
| GCST009524_276 | Household income (MTAG) | 3.000000e-09 |
| GCST009524_38 | Household income (MTAG) | 7.000000e-10 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0009695 | household income |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D007888 | Leigh Disease | C10.228.140.163.100.412; C16.320.565.189.412; C16.320.565.202.810.444; C18.452.132.100.412; C18.452.648.189.412; C18.452.648.202.810.444; C18.452.660.520 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
22 total (human), top 22 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| aristolochic acid I | increases expression | 1 |
| dicrotophos | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| tris(2-butoxyethyl) phosphate | affects expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | increases expression | 1 |
| sodium arsenite | increases expression | 1 |
| cobaltous chloride | increases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| CGP 52608 | increases reaction, affects binding | 1 |
| Sunitinib | increases expression | 1 |
| Leflunomide | increases expression | 1 |
| Acetaldehyde | increases expression | 1 |
| Acetaminophen | increases expression | 1 |
| Air Pollutants | increases abundance, affects expression | 1 |
| Benzo(a)pyrene | affects methylation | 1 |
| Hydralazine | affects cotreatment, decreases expression | 1 |
| Ozone | affects expression, increases abundance | 1 |
| Smoke | decreases expression | 1 |
| Urethane | decreases expression | 1 |
| Valproic Acid | affects cotreatment, decreases expression | 1 |
| Cyclosporine | increases expression | 1 |
| Okadaic Acid | decreases expression | 1 |
Cellosaurus cell lines
1 cell lines: 1 telomerase immortalized cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_C3KP | N/Tert-1 UBOX5 | Telomerase immortalized cell line | Male |
Clinical trials (associated diseases)
14 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT01721733 | PHASE2 | COMPLETED | Safety and Efficacy Study of EPI-743 in Children With Leigh Syndrome |
| NCT02352896 | PHASE2 | COMPLETED | Long-Term Safety and Efficacy Evaluation of EPI-743 in Children With Leigh Syndrome |
| NCT03747328 | PHASE2 | WITHDRAWN | ABI-009 (Nab-sirolimus) in Patients With Genetically-confirmed Leigh or Leigh-like Syndrome |
| NCT06843811 | PHASE2 | ENROLLING_BY_INVITATION | Sirolimus for Leigh Syndrome |
| NCT06990984 | PHASE2 | NOT_YET_RECRUITING | A Dose-ranging Study of TTI-0102 in Adults and Children With Leigh Syndrome Spectrum (LSS) |
| NCT02544217 | PHASE1 | COMPLETED | A Dose-escalating Clinical Trial With KH176 |
| NCT04378075 | PHASE2/PHASE3 | TERMINATED | A Study to Evaluate Efficacy and Safety of Vatiquinone for Treating Mitochondrial Disease in Participants With Refractory Epilepsy |
| NCT01780168 | Not specified | RECRUITING | The NIH MINI Study: Metabolism, Infection, and Immunity in Inborn Errors of Metabolism |
| NCT01793168 | Not specified | RECRUITING | Rare Disease Patient Registry & Natural History Study - Coordination of Rare Diseases at Sanford |
| NCT01803906 | Not specified | ENROLLING_BY_INVITATION | Tissue Sample Study for Mitochondrial Disorders |
| NCT03137355 | Not specified | RECRUITING | The International Registry for Leigh Syndrome |
| NCT05277363 | Not specified | WITHDRAWN | A Study of the Natural Course of SURF1 Deficiency |
| NCT05554835 | Not specified | RECRUITING | Global Registry and Natural History Study for Mitochondrial Disorders |
| NCT06967831 | Not specified | RECRUITING | Drug Repurposing for Mitochondrial Disorders Using iPSCs Derived Neural Cells |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Leigh syndrome, mitochondrial complex IV deficiency, nuclear type 24