UBR5
gene geneOn this page
Also known as DD5HYDEDDKIAA0896
Summary
UBR5 (ubiquitin protein ligase E3 component n-recognin 5, HGNC:16806) is a protein-coding gene on chromosome 8q22.3, encoding E3 ubiquitin-protein ligase UBR5 (O95071). E3 ubiquitin-protein ligase involved in different protein quality control pathways in the cytoplasm and nucleus. It is a selective cancer dependency (DepMap: 55.0% of cell lines).
This gene encodes a progestin-induced protein, which belongs to the HECT (homology to E6-AP carboxyl terminus) family. The HECT family proteins function as E3 ubiquitin-protein ligases, targeting specific proteins for ubiquitin-mediated proteolysis. This gene is localized to chromosome 8q22 which is disrupted in a variety of cancers. This gene potentially has a role in regulation of cell proliferation or differentiation.
Source: NCBI Gene 51366 — RefSeq curated summary.
At a glance
- Gene–disease (curated): neurodevelopmental disorder (Definitive, GenCC)
- GWAS associations: 6
- Clinical variants (ClinVar): 421 total — 7 pathogenic, 1 likely-pathogenic
- Phenotypes (HPO): 62
- Cancer driver (intOGen): loss-of-function (tumor-suppressor-like) across 6 cancer types
- Cancer dependency (DepMap): dependent in 55.0% of screened cell lines
- MANE Select transcript:
NM_015902
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:16806 |
| Approved symbol | UBR5 |
| Name | ubiquitin protein ligase E3 component n-recognin 5 |
| Location | 8q22.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | DD5, HYD, EDD, KIAA0896 |
| Ensembl gene | ENSG00000104517 |
| Ensembl biotype | protein_coding |
| OMIM | 608413 |
| Entrez | 51366 |
Gene structure
Transcript identifiers
Ensembl transcripts: 19 — 13 protein_coding, 5 retained_intron, 1 protein_coding_CDS_not_defined
ENST00000220959, ENST00000517465, ENST00000518145, ENST00000518205, ENST00000519365, ENST00000519528, ENST00000520539, ENST00000520898, ENST00000521312, ENST00000521566, ENST00000521767, ENST00000521922, ENST00000522327, ENST00000926952, ENST00000926953, ENST00000926954, ENST00000926955, ENST00000926956, ENST00000956066
RefSeq mRNA: 2 — MANE Select: NM_015902
NM_001282873, NM_015902
CCDS: CCDS34933, CCDS64946
Canonical transcript exons
ENST00000520539 — 59 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000981200 | 102361582 | 102361626 |
| ENSE00000981202 | 102361125 | 102361206 |
| ENSE00000981205 | 102360071 | 102360190 |
| ENSE00000981207 | 102346903 | 102347092 |
| ENSE00000981209 | 102346236 | 102346395 |
| ENSE00000981211 | 102345396 | 102345545 |
| ENSE00000981213 | 102342473 | 102342684 |
| ENSE00001165952 | 102268978 | 102269108 |
| ENSE00001165958 | 102270039 | 102270183 |
| ENSE00001165966 | 102271134 | 102271245 |
| ENSE00001165974 | 102272529 | 102272772 |
| ENSE00001166231 | 102275521 | 102275619 |
| ENSE00001166243 | 102276972 | 102277192 |
| ENSE00001166252 | 102278826 | 102278939 |
| ENSE00001166257 | 102279036 | 102279208 |
| ENSE00001166262 | 102280394 | 102280467 |
| ENSE00001166266 | 102281289 | 102281519 |
| ENSE00001166270 | 102285127 | 102285338 |
| ENSE00001166293 | 102287433 | 102287564 |
| ENSE00001166305 | 102289453 | 102289576 |
| ENSE00001166308 | 102293605 | 102293844 |
| ENSE00001166314 | 102293955 | 102294115 |
| ENSE00001166319 | 102294982 | 102295111 |
| ENSE00001166320 | 102295204 | 102295330 |
| ENSE00001166336 | 102296893 | 102296984 |
| ENSE00001166340 | 102297458 | 102297606 |
| ENSE00001166347 | 102298392 | 102298489 |
| ENSE00001166350 | 102298848 | 102298971 |
| ENSE00001166355 | 102299452 | 102299547 |
| ENSE00001166360 | 102300000 | 102300151 |
| ENSE00001166365 | 102304043 | 102304169 |
| ENSE00001166369 | 102305085 | 102305295 |
| ENSE00001166374 | 102311299 | 102311496 |
| ENSE00001166379 | 102311735 | 102311889 |
| ENSE00001166383 | 102312134 | 102312245 |
| ENSE00001166389 | 102312342 | 102312485 |
| ENSE00001166396 | 102313804 | 102313916 |
| ENSE00001166401 | 102314744 | 102314853 |
| ENSE00001166407 | 102323311 | 102323495 |
| ENSE00001166412 | 102326546 | 102326663 |
| ENSE00001166417 | 102327742 | 102327896 |
| ENSE00001166425 | 102329090 | 102329200 |
| ENSE00001166431 | 102329283 | 102329399 |
| ENSE00001216106 | 102252273 | 102254514 |
| ENSE00001216174 | 102265100 | 102265278 |
| ENSE00001505163 | 102285513 | 102285781 |
| ENSE00001505164 | 102286360 | 102286617 |
| ENSE00001505165 | 102295414 | 102295532 |
| ENSE00001505166 | 102295636 | 102295782 |
| ENSE00002109064 | 102412173 | 102412700 |
| ENSE00003259418 | 102264474 | 102264558 |
| ENSE00003352533 | 102261915 | 102262070 |
| ENSE00003473910 | 102258985 | 102259129 |
| ENSE00003494527 | 102257632 | 102257717 |
| ENSE00003538593 | 102275708 | 102275828 |
| ENSE00003652784 | 102288155 | 102288266 |
| ENSE00003660785 | 102360589 | 102360665 |
| ENSE00003676937 | 102266947 | 102267007 |
| ENSE00003687184 | 102261146 | 102261259 |
Expression profiles
Bgee: expression breadth ubiquitous, 300 present calls, max score 98.28.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 34.6801 / max 297.9287, expressed in 1819 samples.
FANTOM5 promoters (13 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 94272 | 28.3325 | 1817 |
| 94273 | 1.9719 | 1203 |
| 94268 | 0.6516 | 255 |
| 94274 | 0.5802 | 336 |
| 94275 | 0.5495 | 303 |
| 94278 | 0.5339 | 306 |
| 94279 | 0.5216 | 283 |
| 94269 | 0.4420 | 206 |
| 94270 | 0.3523 | 144 |
| 94277 | 0.3427 | 178 |
Top tissues by expression
302 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| ventricular zone | UBERON:0003053 | 98.28 | gold quality |
| sural nerve | UBERON:0015488 | 98.25 | gold quality |
| ganglionic eminence | UBERON:0004023 | 97.22 | gold quality |
| colonic epithelium | UBERON:0000397 | 97.18 | gold quality |
| calcaneal tendon | UBERON:0003701 | 97.14 | gold quality |
| left testis | UBERON:0004533 | 97.10 | gold quality |
| mucosa of stomach | UBERON:0001199 | 97.04 | gold quality |
| right testis | UBERON:0004534 | 97.01 | gold quality |
| skin of abdomen | UBERON:0001416 | 96.56 | gold quality |
| skin of leg | UBERON:0001511 | 96.55 | gold quality |
| testis | UBERON:0000473 | 96.43 | gold quality |
| left ovary | UBERON:0002119 | 96.41 | gold quality |
| nerve | UBERON:0001021 | 96.33 | gold quality |
| tibial nerve | UBERON:0001323 | 96.33 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 96.33 | gold quality |
| tendon | UBERON:0000043 | 96.24 | gold quality |
| body of uterus | UBERON:0009853 | 96.16 | gold quality |
| right ovary | UBERON:0002118 | 96.15 | gold quality |
| cortical plate | UBERON:0005343 | 96.14 | gold quality |
| secondary oocyte | CL:0000655 | 96.12 | gold quality |
| right uterine tube | UBERON:0001302 | 96.10 | gold quality |
| endocervix | UBERON:0000458 | 95.95 | gold quality |
| ectocervix | UBERON:0012249 | 95.93 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 95.91 | gold quality |
| right lung | UBERON:0002167 | 95.90 | gold quality |
| adenohypophysis | UBERON:0002196 | 95.90 | gold quality |
| tibial artery | UBERON:0007610 | 95.86 | gold quality |
| popliteal artery | UBERON:0002250 | 95.85 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 95.81 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 95.72 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 5.94 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): TP53
miRNA regulators (miRDB)
204 targeting UBR5, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-1252-5P | 100.00 | 69.80 | 2774 |
| HSA-MIR-126-5P | 100.00 | 72.71 | 3180 |
| HSA-MIR-9-5P | 100.00 | 72.28 | 2361 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-MIR-223-3P | 99.99 | 70.14 | 1140 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-12136 | 99.98 | 72.81 | 5713 |
| HSA-MIR-548P | 99.98 | 72.25 | 3784 |
| HSA-MIR-548N | 99.98 | 71.94 | 4170 |
| HSA-MIR-520D-5P | 99.98 | 73.34 | 4883 |
| HSA-MIR-524-5P | 99.98 | 73.43 | 4882 |
| HSA-MIR-27A-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-27B-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-9985 | 99.98 | 72.11 | 2939 |
| HSA-MIR-5696 | 99.98 | 72.36 | 4487 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-3692-3P | 99.98 | 70.27 | 2139 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
| HSA-MIR-548AN | 99.97 | 70.91 | 2817 |
| HSA-MIR-3688-3P | 99.97 | 72.02 | 2834 |
| HSA-MIR-1468-3P | 99.96 | 72.74 | 3797 |
| HSA-MIR-548AJ-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-548X-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-548AT-5P | 99.96 | 70.83 | 2666 |
| HSA-MIR-570-3P | 99.96 | 72.41 | 4910 |
| HSA-MIR-590-3P | 99.96 | 74.34 | 6478 |
| HSA-MIR-551B-5P | 99.96 | 71.28 | 3493 |
| HSA-MIR-128-3P | 99.95 | 71.17 | 2484 |
| HSA-MIR-216A-3P | 99.95 | 71.19 | 2505 |
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 55.0% of screened cell lines.
Literature-anchored findings (GeneRIF, showing 40)
- ubiquitin-protein ligase EDD interacts with importin alpha 5 through consensus basic nuclear localization signals and is localized in cell nuclei. EDD also binds progesterone receptor (PR) and potentiates progestin-mediated gene transactivation. (PMID:12011095)
- EDD is a novel mediator in DNA damage signal transduction via CHK2 and emphasize the potential importance of EDD in cancer. (PMID:17074762)
- EDD plays the role in the maintenance of genomic stability, emphasising the potential importance of dysregulated EDD expression and/or function in the evolution of cancer. (PMID:18073532)
- These results identify EDD as a new independent prognostic marker for outcome in serous ovarian cancer (PMID:18349819)
- study confirmed the presence of UBR5 mutation in exon 45 in high microsatellite instability cacarcinomas; could not identify exon 42 mutations in colorectal cancers and exon 51 mutations in breast cancers (PMID:20025491)
- Data show that in addition to PP2Ac, alpha4 interacts with EDD and PABP, suggesting its involvement in multiple steps in the mTOR pathway that leads to translation initiation and cell-cycle progression. (PMID:20544796)
- EDD ubiquitinates beta-catenin through Lys29- or Lys11-linked ubiquitin chains, leading to enhanced stability of beta-catenin. (PMID:21118991)
- identify UBR5 as a novel E3 ligase that regulates transcription and define an additional function of TFIIS in the regulation of CDK9. (PMID:21127351)
- The authors show that human EDD can interact independently with both human papillomavirus type 18 E6 and human E6AP. (PMID:21228227)
- through binding to p53, EDD actively inhibits p53 phosphorylation by ATM and plays a role in ensuring smooth G(1)/S progression. (PMID:21383020)
- EDD1 suppresses death-receptor expression, and its expression is elevated in breast, pancreas, and lung cancer cell lines resistant to death receptor-mediated apoptosis. (PMID:21949371)
- Increased p53 levels upon EDD depletion cause a G(1) arrest, as co-depletion of EDD and p53 completely rescues this effect on cell cycle progression. (PMID:22374670)
- Study shows that TRIP12 and UBR5, two HECT domain ubiquitin E3 ligases, control accumulation of RNF168, a rate-limiting component of a pathway that ubiquitylates histones after DNA breakage. (PMID:22884692)
- Ubiquitination assays showed that the C-lobe of UBR5 is able to form a thioester-linked E3-ubiquitin complex, although it does not physically interact with UBCH4 in NMR experiments (PMID:23027739)
- Interaction between microspherule protein Msp58 and ubiquitin E3 ligase EDD regulates cell cycle progression. (PMID:23069210)
- Data indicate that Dyrk2 phosphorylates TERT protein, which is then associated with the EDD-DDB1-VprBP E3 ligase complex for subsequent ubiquitin-mediated TERT protein degradation. (PMID:23362280)
- The recurrence and clustering of deleterious mutations implicate UBR5 mutations as a critical pathogenic event in a subgroup of mantle cell lymphoma. (PMID:23407552)
- As a molecular adaptor, Vpr enhanced the interaction between TERT and the VPRBP substrate receptor of the DYRK2-associated EDD-DDB1-VPRBP E3 ligase complex, resulting in increased ubiquitination of TERT. (PMID:23612978)
- These findings suggest that expression of UBR5-ZNF423 protein might contribute to the transformation of a subset of Nasopharyngeal carcinoma (PMID:23878065)
- Determined is the three-dimensional solution structure of the catalytic RING2 domain from HHARI. It shows glimpses of a HECT E3 ligase. (PMID:24058416)
- the alpha4 N-terminus binding to endogenous PP2Ac and PABP, and the C-terminus to EDD, is reported. (PMID:24145130)
- These results identify EDD as a dual regulator of cell survival and cisplatin resistance and suggest that EDD is a therapeutic target for ovarian cancer. (PMID:24379240)
- UBR5 knockdown results in accumulation of cellular pregnane X receptor and an increase in its activity. (PMID:24438055)
- Utilizing a high throughput RNAi screening approach author identified UBR5, a protein commonly amplified in breast cancer, as a novel regulator of ERalpha protein levels and transcriptional activity. (PMID:24441042)
- these observations highlight the potential role of EDD in regulating mitotic progression and the cellular response to perturbed mitosis. (PMID:25833949)
- results confirm the role of the MLLE domain of UBR5 in substrate recruitment and suggest a potential role in regulating UBR5 ligase activity. (PMID:26224628)
- Colony-formation assays and soft agar assays show that gain of function of TIP60 or depletion of EDD1 in HPV-positive cervical cancer cells significantly inhibits cell growth in vitro (PMID:26234678)
- Human herpesvirus-6 U14 induces cell cycle arrest in G2/M phase by associating with a cellular protein, EDD. (PMID:26340541)
- Elevated metaphase RanGTP levels use Ubr5 to couple overall chromosome congression to SAC silencing. (PMID:26438829)
- Study highlights many functional biological role of UBR5 especially in cancer where it seems to be a key regulator of cell signaling. [review] (PMID:26464214)
- Data show that ubiquitin protein ligase E3 component n-recognin 5 protein (UBR5) bound the tumor suppressor gastrokine 1 (GKN1) and increased its ubiquitination to reduce the protein stability of GKN1. (PMID:27590582)
- BMI1 and UBR5 repress the polymerase II (Pol II)-mediated transcription at damaged sites (PMID:27647897)
- UBR5 downregulates proapoptotic MOAP-1 and suggest that UBR5 can confer cisplatin resistance in ovarian cancer. (PMID:27721409)
- Findings unveil UBR5 as a novel and critical regulator of tumor growth, metastasis, and immune response in triple negative breast cancer. (PMID:28330927)
- Results found that EDD was consistent with GOLPH3 expression and also promoted the EMT process and activated Wnt/beta-catenin signaling in epithelial ovarian cancer. (PMID:28332316)
- Data suggest that UBR5 down-regulates levels of TRAF3, a key component of Toll-like receptor signaling, via the miRNA pathway; p90RSK is an upstream regulator of UBR5; p90RSK phosphorylates UBR5 as required for translational repression of TRAF3 mRNA. (UBR5 = ubiquitin protein ligase E3 component n-recognin 5 protein; TRAF3 = TNF receptor-associated factor 3; p90RSK = 90 kDa ribosomal protein S6 kinase) (PMID:28559278)
- Wnt-dependent inactivation of the Groucho/TLE co-repressor by the HECT E3 ubiquitin ligase Hyd/UBR5 is a key prerequisite that enables Armadillo/beta-catenin to activate transcription. (PMID:28689657)
- UBR5 directly binds to the tumor suppressor esophageal cancer-related gene 4, increasing its ubiquitination to reducing the protein stability of ECRG4 to promote colorectal cancer progression. (PMID:28856538)
- UBR5 was highly expressed in colon cancer not only at mRNA level but also at protein level; UBR5 promoted the growth of colon cancer cells, and inhibited apoptosis. (PMID:29441938)
- UBR5 ubiquitylates CSPP1, and that UBR5 is required for cytoplasmic organization of CSPP1-comprising centriolar satellites in centrosomal periphery. (PMID:29742019)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | ubr5 | ENSDARG00000018192 |
| mus_musculus | Ubr5 | ENSMUSG00000037487 |
| rattus_norvegicus | Ubr5 | ENSRNOG00000006816 |
| drosophila_melanogaster | hyd | FBGN0002431 |
Paralogs (24): HECW1 (ENSG00000002746), UBE3C (ENSG00000009335), NEDD4L (ENSG00000049759), NEDD4 (ENSG00000069869), ITCH (ENSG00000078747), HACE1 (ENSG00000085382), HUWE1 (ENSG00000086758), HECTD1 (ENSG00000092148), SMURF2 (ENSG00000108854), UBE3A (ENSG00000114062), AREL1 (ENSG00000119682), WWP1 (ENSG00000123124), HERC2 (ENSG00000128731), HECW2 (ENSG00000138411), HERC3 (ENSG00000138641), HERC6 (ENSG00000138642), HERC5 (ENSG00000138646), HERC4 (ENSG00000148634), UBE3B (ENSG00000151148), TRIP12 (ENSG00000153827), HECTD2 (ENSG00000165338), HECTD4 (ENSG00000173064), WWP2 (ENSG00000198373), SMURF1 (ENSG00000198742)
Protein
Protein identifiers
E3 ubiquitin-protein ligase UBR5 — O95071 (reviewed: O95071)
Alternative names: E3 ubiquitin-protein ligase, HECT domain-containing 1, Hyperplastic discs protein homolog, Progestin-induced protein
All UniProt accessions (6): O95071, E5RFK7, E7EMW7, E7ET84, H0YAV7, H0YBB4
UniProt curated annotations — full annotation on UniProt →
Function. E3 ubiquitin-protein ligase involved in different protein quality control pathways in the cytoplasm and nucleus. Mainly acts as a ubiquitin chain elongator that extends pre-ubiquitinated substrates. Component of the N-end rule pathway: ubiquitinates proteins bearing specific N-terminal residues that are destabilizing according to the N-end rule, leading to their degradation. Recognizes type-1 N-degrons, containing positively charged amino acids (Arg, Lys and His). Together with UBR4, part of a cytoplasm protein quality control pathway that prevents protein aggregation by catalyzing assembly of heterotypic ‘Lys-11’-/‘Lys-48’-linked branched ubiquitin chains on aggregated proteins, leading to substrate recognition by the segregase p97/VCP and degradation by the proteasome: UBR5 is probably branching multiple ‘Lys-48’-linked chains of substrates initially modified with mixed conjugates by UBR4. Together with ITCH, catalyzes ‘Lys-48’-/‘Lys-63’-branched ubiquitination of TXNIP, leading to its degradation: UBR5 mediates branching of ‘Lys-48’-linked chains of substrates initially modified with ‘Lys-63’-linked conjugates by ITCH. Catalytic component of a nuclear protein quality control pathway that mediates ubiquitination and degradation of unpaired transcription factors (i.e. transcription factors that are not assembled into functional multiprotein complexes): specifically recognizes and binds degrons that are not accessible when transcription regulators are associated with their coactivators. Ubiquitinates various unpaired transcription regulator (MYC, SUPT4H1, SUPT5H, CDC20 and MCRS1), as well as ligand-bound nuclear receptors (ESR1, NR1H3, NR3C1, PGR, RARA, RXRA AND VDR) that are not associated with their nuclear receptor coactivators (NCOAs). Involved in maturation and/or transcriptional regulation of mRNA by mediating polyubiquitination and activation of CDK9. Also acts as a regulator of DNA damage response by acting as a suppressor of RNF168, an E3 ubiquitin-protein ligase that promotes accumulation of ‘Lys-63’-linked histone H2A and H2AX at DNA damage sites, thereby acting as a guard against excessive spreading of ubiquitinated chromatin at damaged chromosomes. Regulates DNA topoisomerase II binding protein (TopBP1) in the DNA damage response. Ubiquitinates acetylated PCK1. Acts as a positive regulator of the canonical Wnt signaling pathway by mediating (1) ubiquitination and stabilization of CTNNB1, and (2) ‘Lys-48’-linked ubiquitination and degradation of TLE3. Promotes disassembly of the mitotic checkpoint complex (MCC) from the APC/C complex by catalyzing ubiquitination of BUB1B, BUB3 and CDC20. Plays an essential role in extraembryonic development. Required for the maintenance of skeletal tissue homeostasis by acting as an inhibitor of hedgehog (HH) signaling.
Subunit / interactions. Homotetramer; composed of a dimer of dimers. Associates with CDK9 and TFIIS/TCEA1 and forms a transcription regulatory complex made of CDK9, RNAP II, UBR5 and TFIIS/TCEA1 that can stimulate target gene transcription (e.g. gamma fibrinogen/FGG) by recruiting their promoters. Associates with the E3 ligase complex containing DYRK2, EDD/UBR5, DDB1 and DCAF1 proteins (EDVP complex). Binds TOPBP1. Interacts with PIH1D1. Interacts with CIB1. (Microbial infection) Interacts with human T-cell leukemia virus 1/HTLV-1 protein HBZ; this interaction modulates HBZ stability.
Subcellular location. Nucleus. Cytoplasm.
Tissue specificity. Widely expressed. Most abundant in testis and expressed at high levels in brain, pituitary and kidney.
Domain organisation. The UBR-type zinc finger forms a pocket that mediates recognition of type 1 N-degrons. The UBA domain recognizes and binds ubiquitin. It acts as an ubiquitin acceptor required to place ‘Lys-48’ of ubiquitin into the HECT domain activie site, thereby potentiating the E3 ubiquitin-protein ligase activity.
Pathway. Protein modification; protein ubiquitination.
Similarity. Belongs to the UBR5 family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| O95071-1 | 1 | yes |
| O95071-2 | 2 |
RefSeq proteins (2): NP_001269802, NP_056986* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000569 | HECT_dom | Domain |
| IPR002004 | PABP_HYD_C | Domain |
| IPR003126 | Znf_UBR | Domain |
| IPR009091 | RCC1/BLIP-II | Homologous_superfamily |
| IPR024725 | UBR5_UBA | Domain |
| IPR035983 | Hect_E3_ubiquitin_ligase | Homologous_superfamily |
| IPR036053 | PABP-dom | Homologous_superfamily |
| IPR047503 | UBR-box_UBR5 | Domain |
Pfam: PF00632, PF00658, PF11547
UniProt features (307 total): helix 95, strand 81, modified residue 34, turn 22, compositionally biased region 20, region of interest 12, binding site 12, sequence conflict 11, mutagenesis site 11, domain 3, initiator methionine 1, chain 1, active site 1, zinc finger region 1, splice variant 1, sequence variant 1
Structure
Experimental structures (PDB)
11 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 1I2T | X-RAY DIFFRACTION | 1.04 |
| 2QHO | X-RAY DIFFRACTION | 1.85 |
| 3PT3 | X-RAY DIFFRACTION | 1.97 |
| 8E0Q | ELECTRON MICROSCOPY | 2.66 |
| 8C06 | ELECTRON MICROSCOPY | 2.7 |
| 8D4X | ELECTRON MICROSCOPY | 2.8 |
| 8BJA | ELECTRON MICROSCOPY | 3 |
| 8C07 | ELECTRON MICROSCOPY | 3.3 |
| 8P82 | ELECTRON MICROSCOPY | 3.36 |
| 8EWI | ELECTRON MICROSCOPY | 3.5 |
| 8P83 | ELECTRON MICROSCOPY | 3.87 |
Predicted structure (AlphaFold)
No AlphaFold model available for O95071 — AlphaFold DB does not currently provide models for proteins above ~3000 aa.
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 2768 (glycyl thioester intermediate)
Ligand- & substrate-binding residues (12): 1179; 1196; 1199; 1208; 1211; 1211; 1215; 1216; 1219; 1232; 1234; 1240
Post-translational modifications (34): 2, 110, 327, 352, 578, 612, 637, 808, 928, 1018, 1115, 1135, 1227, 1308, 1355, 1375, 1481, 1549, 1736, 1741 …
Mutagenesis-validated functional residues (11):
| Position | Phenotype |
|---|---|
| 196 | abolished binding to ubiquitin, leading to strongly reduced e3 ubiquitin-protein ligase activity. |
| 214 | does not affect binding to ubiquitin. |
| 218 | does not affect binding to ubiquitin. |
| 224 | abolished binding to ubiquitin. |
| 1914 | impaired tetramerization. |
| 1926 | impaired tetramerization. |
| 1931 | impaired tetramerization. |
| 2576 | reduced but not abolished e3 ubiquitin-protein ligase activity. |
| 2732 | strongly reduced e3 ubiquitin-protein ligase activity. |
| 2768 | loss of e3 ubiquitin-protein ligase activity. |
| 2790 | strongly reduced e3 ubiquitin-protein ligase activity. |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 356 (showing top):
GSE18804_BRAIN_VS_COLON_TUMORAL_MACROPHAGE_DN, MORF_MBD4, MORF_RAB5A, GOBP_INTRACELLULAR_PROTEIN_TRANSPORT, GOBP_CELLULAR_RESPONSE_TO_LIPID, TGCACTT_MIR519C_MIR519B_MIR519A, TTTGTAG_MIR520D, GOBP_POSITIVE_REGULATION_OF_INTRACELLULAR_PROTEIN_TRANSPORT, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_DN, GOBP_POSITIVE_REGULATION_OF_PROTEIN_LOCALIZATION, GOBP_MACROMOLECULE_CATABOLIC_PROCESS, MORF_RAD21, GOBP_REGULATION_OF_WNT_SIGNALING_PATHWAY, GOBP_ESTABLISHMENT_OF_PROTEIN_LOCALIZATION_TO_ORGANELLE, MORF_PSMC2
GO Biological Process (24): protein polyubiquitination (GO:0000209), DNA repair (GO:0006281), DNA damage response (GO:0006974), positive regulation of gene expression (GO:0010628), heterochromatin boundary formation (GO:0033696), protein K29-linked ubiquitination (GO:0035519), positive regulation of protein import into nucleus (GO:0042307), proteasome-mediated ubiquitin-dependent protein catabolic process (GO:0043161), negative regulation of smoothened signaling pathway (GO:0045879), progesterone receptor signaling pathway (GO:0050847), protein K48-linked ubiquitination (GO:0070936), protein K11-linked ubiquitination (GO:0070979), cytoplasm protein quality control by the ubiquitin-proteasome system (GO:0071629), nuclear protein quality control by the ubiquitin-proteasome system (GO:0071630), positive regulation of canonical Wnt signaling pathway (GO:0090263), cytoplasm protein quality control (GO:0140455), DNA repair-dependent chromatin remodeling (GO:0140861), protein branched polyubiquitination (GO:0141198), response to oxidative stress (GO:0006979), proteasomal protein catabolic process (GO:0010498), protein ubiquitination (GO:0016567), estrogen receptor signaling pathway (GO:0030520), retinoic acid receptor signaling pathway (GO:0048384), vitamin D receptor signaling pathway (GO:0070561)
GO Molecular Function (9): RNA binding (GO:0003723), zinc ion binding (GO:0008270), ubiquitin-ubiquitin ligase activity (GO:0034450), ubiquitin binding (GO:0043130), ubiquitin protein ligase activity (GO:0061630), ubiquitin-protein transferase activity (GO:0004842), protein binding (GO:0005515), transferase activity (GO:0016740), metal ion binding (GO:0046872)
GO Cellular Component (8): chromatin (GO:0000785), nucleus (GO:0005634), nucleoplasm (GO:0005654), cytoplasm (GO:0005737), cytosol (GO:0005829), membrane (GO:0016020), protein-containing complex (GO:0032991), perinuclear region of cytoplasm (GO:0048471)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 6 |
| protein polyubiquitination | 4 |
| DNA damage response | 2 |
| proteasome-mediated ubiquitin-dependent protein catabolic process | 2 |
| cellular response to misfolded protein | 2 |
| protein quality control for misfolded or incompletely synthesized proteins | 2 |
| cytoplasm | 2 |
| protein ubiquitination | 1 |
| DNA metabolic process | 1 |
| cellular response to stress | 1 |
| gene expression | 1 |
| regulation of gene expression | 1 |
| positive regulation of macromolecule biosynthetic process | 1 |
| heterochromatin formation | 1 |
| heterochromatin organization | 1 |
| protein import into nucleus | 1 |
| regulation of protein import into nucleus | 1 |
| positive regulation of nucleocytoplasmic transport | 1 |
| positive regulation of intracellular protein transport | 1 |
| positive regulation of protein localization to nucleus | 1 |
| ubiquitin-dependent protein catabolic process | 1 |
| proteasomal protein catabolic process | 1 |
| smoothened signaling pathway | 1 |
| regulation of smoothened signaling pathway | 1 |
| negative regulation of signal transduction | 1 |
| nuclear receptor-mediated steroid hormone signaling pathway | 1 |
| cytoplasm protein quality control | 1 |
| positive regulation of Wnt signaling pathway | 1 |
| canonical Wnt signaling pathway | 1 |
| regulation of canonical Wnt signaling pathway | 1 |
| chromatin remodeling | 1 |
| response to stress | 1 |
| protein catabolic process | 1 |
| nucleic acid binding | 1 |
| transition metal ion binding | 1 |
| ubiquitin protein ligase activity | 1 |
| ubiquitin-like protein binding | 1 |
| ubiquitin-protein transferase activity | 1 |
| ubiquitin-like protein ligase activity | 1 |
| ubiquitin-like protein transferase activity | 1 |
Protein interactions and networks
STRING
3044 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| UBR5 | UBR1 | Q8IWV7 | 913 |
| UBR5 | QKI | Q96PU8 | 847 |
| UBR5 | NOVA1 | P51513 | 785 |
| UBR5 | OTUD5 | Q96G74 | 782 |
| UBR5 | PCK1 | P35558 | 774 |
| UBR5 | DCAF1 | Q9Y4B6 | 718 |
| UBR5 | DDB1 | Q16531 | 714 |
| UBR5 | ATMIN | O43313 | 707 |
| UBR5 | DYRK2 | Q92630 | 706 |
| UBR5 | UBR2 | Q8IWV8 | 673 |
| UBR5 | UBR7 | Q8N806 | 644 |
| UBR5 | UBR3 | Q6ZT12 | 622 |
| UBR5 | ZUP1 | Q96AP4 | 621 |
| UBR5 | TP53 | P04637 | 618 |
| UBR5 | UBR4 | Q5T4S7 | 595 |
IntAct
291 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| MED19 | MED19 | psi-mi:“MI:0914”(association) | 0.730 |
| MED26 | MED19 | psi-mi:“MI:0914”(association) | 0.730 |
| CFTR | ESYT2 | psi-mi:“MI:0914”(association) | 0.710 |
| PKN3 | ARHGAP10 | psi-mi:“MI:0914”(association) | 0.680 |
| BUB1 | NDC80 | psi-mi:“MI:0915”(physical association) | 0.670 |
| P4HA3 | FAM171A2 | psi-mi:“MI:0914”(association) | 0.640 |
| Cep78 | UBR5 | psi-mi:“MI:0915”(physical association) | 0.560 |
| PLK1 | C1orf226 | psi-mi:“MI:0914”(association) | 0.560 |
| TTC7A | UBR5 | psi-mi:“MI:0915”(physical association) | 0.560 |
| EBNA-LP | HAX1 | psi-mi:“MI:0914”(association) | 0.530 |
| FAF2 | PJA2 | psi-mi:“MI:0914”(association) | 0.530 |
| PRSS37 | MANBA | psi-mi:“MI:0914”(association) | 0.530 |
| POGLUT1 | ZZEF1 | psi-mi:“MI:0914”(association) | 0.530 |
| DDX28 | PTCD1 | psi-mi:“MI:0914”(association) | 0.530 |
| ILK | ILVBL | psi-mi:“MI:0914”(association) | 0.530 |
| MINK1 | CNOT1 | psi-mi:“MI:0914”(association) | 0.530 |
| ZNF223 | PPM1G | psi-mi:“MI:0914”(association) | 0.530 |
| HTRA2 | HAX1 | psi-mi:“MI:2364”(proximity) | 0.420 |
| Bub1 | NDC80 | psi-mi:“MI:0915”(physical association) | 0.400 |
| Ubr5 | UBR5 | psi-mi:“MI:0915”(physical association) | 0.400 |
| Bub1b | NDC80 | psi-mi:“MI:0915”(physical association) | 0.400 |
| UBR5 | UBE2E1 | psi-mi:“MI:0915”(physical association) | 0.370 |
| UBE2E2 | UBR5 | psi-mi:“MI:0915”(physical association) | 0.370 |
| UBR5 | UBE2E3 | psi-mi:“MI:0915”(physical association) | 0.370 |
BioGRID (857): UBR5 (Affinity Capture-MS), UBR5 (Biochemical Activity), UBR5 (Affinity Capture-MS), UBR5 (Affinity Capture-MS), UBR5 (Affinity Capture-MS), MRS2 (Affinity Capture-MS), C1QBP (Affinity Capture-MS), BUB3 (Affinity Capture-MS), XPNPEP3 (Affinity Capture-MS), UBR5 (Affinity Capture-Western), UBR5 (Affinity Capture-Western), UBR5 (Affinity Capture-Western), UBR5 (Affinity Capture-Western), ACTR1A (Co-fractionation), EIF3I (Co-fractionation)
ESM2 similar proteins: A0A1L8GLK3, A0A974CYQ5, A2AHJ4, A5WW08, D2HNY3, D2HWM5, E7F6T8, F1ND48, O15040, O70260, O95071, P59328, Q3TLR7, Q4V837, Q58DC2, Q58WW2, Q5E9J6, Q5F479, Q5FWP4, Q5NVC7, Q5R9B8, Q5RF77, Q5RGA4, Q5RHI5, Q5ZLG9, Q62671, Q66JG1, Q6DDH2, Q6P1W0, Q6P256, Q6PCD5, Q6PJI9, Q6RI45, Q80TP3, Q80U93, Q810L3, Q8C0M0, Q8CBW4, Q8CIK8, Q8CIN9
Diamond homologs: A0A0D1DWZ5, A1CRM1, A1D4K4, A2A5N3, A2Q848, A3LXL0, A4QUF0, A5DM21, A5DW14, F1QB54, F4HT49, O04319, O09032, O14102, O22173, O64380, O88569, O95071, P04147, P0CB38, P0CP46, P0CP47, P11940, P19684, P20965, P21187, P22626, P26378, P29341, P31209, P32588, P39684, P42731, P49313, P51989, P51990, P60047, P60048, P60049, P60050
SIGNOR signaling
11 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| TCEA1 | up-regulates | UBR5 | binding |
| UBR5 | “down-regulates quantity” | RNF168 | ubiquitination |
| UBR5 | “down-regulates quantity by destabilization” | PCK1 | ubiquitination |
| Ub:E2 | “up-regulates activity” | UBR5 | ubiquitination |
| UBR5 | “form complex” | EDVP | binding |
| UBR5 | “down-regulates quantity by destabilization” | PAIP2 | polyubiquitination |
| UBR5 | “down-regulates quantity by destabilization” | SOX2 | polyubiquitination |
| UBR5 | “down-regulates quantity by destabilization” | MOAP1 | ubiquitination |
| UBR5 | “down-regulates quantity by destabilization” | TOPBP1 | polyubiquitination |
| UBE2D2 | “up-regulates activity” | UBR5 | ubiquitination |
| UBE2D3 | “up-regulates activity” | UBR5 | ubiquitination |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 211 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Amplification of signal from the kinetochores | 6 | 8.8× | 6e-03 |
| Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal | 10 | 8.6× | 4e-05 |
| EML4 and NUDC in mitotic spindle formation | 11 | 7.6× | 4e-05 |
| Resolution of Sister Chromatid Cohesion | 11 | 7.0× | 6e-05 |
| RHO GTPases Activate Formins | 12 | 6.9× | 4e-05 |
| Separation of Sister Chromatids | 14 | 6.3× | 3e-05 |
| Mitotic Prometaphase | 11 | 5.6× | 5e-04 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| mitotic spindle assembly checkpoint signaling | 5 | 16.1× | 4e-03 |
| mitotic spindle organization | 7 | 10.9× | 2e-03 |
| protein phosphorylation | 21 | 8.2× | 2e-10 |
| intracellular signal transduction | 16 | 3.5× | 4e-03 |
Disease & clinical
Cancer significance
From intOGen — cancer-driver classification: loss-of-function (tumor-suppressor-like) across 6 cancer types — AML, BRCA, CHRCC, CSCC, MEL, STAD.
Clinical variants and AI predictions
ClinVar
421 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 7 |
| Likely pathogenic | 1 |
| Uncertain significance | 254 |
| Likely benign | 49 |
| Benign | 10 |
Top pathogenic / likely-pathogenic (8)
| Variant ID | HGVS | Classification |
|---|---|---|
| 4279507 | NM_015902.6(UBR5):c.455G>C (p.Arg152Pro) | Pathogenic |
| 4279508 | NM_015902.6(UBR5):c.6557_6562del (p.Leu2186_Gly2187del) | Pathogenic |
| 4279509 | NM_015902.6(UBR5):c.3616TGT[2] (p.Cys1208del) | Pathogenic |
| 4279510 | NM_015902.6(UBR5):c.3682C>T (p.Pro1228Ser) | Pathogenic |
| 4279512 | NM_015902.6(UBR5):c.734G>C (p.Gly245Ala) | Pathogenic |
| 4829735 | NM_015902.6(UBR5):c.8125C>T (p.Gln2709Ter) | Pathogenic |
| 4833014 | NM_015902.6(UBR5):c.4771dup (p.His1591fs) | Pathogenic |
| 563524 | GRCh37/hg19 8q22.3(chr8:102584167-104236192)x1 | Likely pathogenic |
SpliceAI
9234 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 8:102254512:AACC:A | acceptor_loss | 1.0000 |
| 8:102254513:ACCT:A | acceptor_loss | 1.0000 |
| 8:102254514:CCT:C | acceptor_loss | 1.0000 |
| 8:102257626:A:C | donor_gain | 1.0000 |
| 8:102257626:ACTT:A | donor_loss | 1.0000 |
| 8:102257627:CTT:C | donor_loss | 1.0000 |
| 8:102257628:TTA:T | donor_loss | 1.0000 |
| 8:102257629:TACAA:T | donor_loss | 1.0000 |
| 8:102257630:A:AC | donor_gain | 1.0000 |
| 8:102257630:AC:A | donor_loss | 1.0000 |
| 8:102257631:C:CT | donor_gain | 1.0000 |
| 8:102257631:CA:C | donor_gain | 1.0000 |
| 8:102257631:CAA:C | donor_gain | 1.0000 |
| 8:102257631:CAAG:C | donor_gain | 1.0000 |
| 8:102257631:CAAGA:C | donor_gain | 1.0000 |
| 8:102257713:TTCTC:T | acceptor_gain | 1.0000 |
| 8:102257715:CTC:C | acceptor_gain | 1.0000 |
| 8:102257716:TCCT:T | acceptor_loss | 1.0000 |
| 8:102257718:C:CC | acceptor_gain | 1.0000 |
| 8:102257719:T:G | acceptor_loss | 1.0000 |
| 8:102257724:A:AC | acceptor_gain | 1.0000 |
| 8:102257724:A:C | acceptor_gain | 1.0000 |
| 8:102258981:CTAC:C | donor_loss | 1.0000 |
| 8:102258982:TACC:T | donor_loss | 1.0000 |
| 8:102258983:A:C | donor_loss | 1.0000 |
| 8:102258984:C:T | donor_loss | 1.0000 |
| 8:102259126:TTGC:T | acceptor_gain | 1.0000 |
| 8:102261144:A:AC | donor_gain | 1.0000 |
| 8:102261145:C:CC | donor_gain | 1.0000 |
| 8:102261166:C:CT | donor_gain | 1.0000 |
AlphaMissense
18355 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 8:102254308:A:C | F2798L | 1.000 |
| 8:102254308:A:T | F2798L | 1.000 |
| 8:102254309:A:C | F2798C | 1.000 |
| 8:102254309:A:G | F2798S | 1.000 |
| 8:102254310:A:G | F2798L | 1.000 |
| 8:102254312:C:T | G2797D | 1.000 |
| 8:102254313:C:G | G2797R | 1.000 |
| 8:102254314:A:C | F2796L | 1.000 |
| 8:102254314:A:T | F2796L | 1.000 |
| 8:102254316:A:G | F2796L | 1.000 |
| 8:102254330:A:T | I2791N | 1.000 |
| 8:102254333:G:T | A2790D | 1.000 |
| 8:102254336:A:G | L2789P | 1.000 |
| 8:102254342:A:G | L2787S | 1.000 |
| 8:102254354:A:G | L2783P | 1.000 |
| 8:102254354:A:T | L2783H | 1.000 |
| 8:102254373:A:C | Y2777D | 1.000 |
| 8:102254378:G:C | P2775R | 1.000 |
| 8:102254378:G:T | P2775Q | 1.000 |
| 8:102254379:G:T | P2775T | 1.000 |
| 8:102254381:A:T | V2774D | 1.000 |
| 8:102254387:A:C | L2772R | 1.000 |
| 8:102254387:A:G | L2772P | 1.000 |
| 8:102254387:A:T | L2772H | 1.000 |
| 8:102254390:C:G | R2771P | 1.000 |
| 8:102254393:G:A | S2770F | 1.000 |
| 8:102254393:G:T | S2770Y | 1.000 |
| 8:102254394:A:G | S2770P | 1.000 |
| 8:102254396:A:C | I2769S | 1.000 |
| 8:102254396:A:T | I2769N | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000017045 (8:102388318 T>C), RS1000027247 (8:102297360 A>C,T), RS1000037676 (8:102345976 G>T), RS1000045483 (8:102336419 G>C), RS1000058292 (8:102297768 C>G), RS1000121829 (8:102288519 G>A,C), RS1000125535 (8:102384411 C>G), RS1000138356 (8:102394338 G>A), RS1000166760 (8:102304858 C>A), RS1000237060 (8:102356805 G>C), RS1000246333 (8:102370463 G>T), RS1000260743 (8:102412336 C>A,G), RS1000272255 (8:102375165 A>G), RS1000293314 (8:102311083 T>C), RS1000324177 (8:102311538 A>G)
Disease associations
OMIM: gene MIM:608413 | disease phenotypes: MIM:621372
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| neurodevelopmental disorder | Definitive | Autosomal dominant |
Mondo (3): long QT syndrome (MONDO:0002442), neurodevelopmental disorder (MONDO:0700092), neurodevelopmental disorder with speech delay and behavioral abnormalities (MONDO:0980700)
Orphanet (0):
HPO phenotypes
62 total (30 of 62 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000028 | Cryptorchidism |
| HP:0000054 | Micropenis |
| HP:0000189 | Narrow palate |
| HP:0000201 | Pierre-Robin sequence |
| HP:0000248 | Brachycephaly |
| HP:0000252 | Microcephaly |
| HP:0000256 | Macrocephaly |
| HP:0000278 | Retrognathia |
| HP:0000286 | Epicanthus |
| HP:0000311 | Round face |
| HP:0000316 | Hypertelorism |
| HP:0000445 | Wide nose |
| HP:0000463 | Anteverted nares |
| HP:0000577 | Exotropia |
| HP:0000601 | Hypotelorism |
| HP:0000637 | Long palpebral fissure |
| HP:0000664 | Synophrys |
| HP:0000713 | Agitation |
| HP:0000717 | Autism |
| HP:0000729 | Autistic behavior |
| HP:0000732 | Inflexible adherence to routines |
| HP:0000733 | Motor stereotypy |
| HP:0000739 | Anxiety |
| HP:0000750 | Delayed speech and language development |
| HP:0000957 | Cafe-au-lait spot |
| HP:0001159 | Syndactyly |
| HP:0001249 | Intellectual disability |
| HP:0001252 | Hypotonia |
| HP:0001256 | Mild intellectual disability |
GWAS associations
6 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST004125_7 | Type 2 diabetes (age of onset) | 2.000000e-06 |
| GCST004371_2 | Rate of cognitive decline in mild cognitive impairment (time interaction) | 4.000000e-14 |
| GCST008940_2 | Chromosomal aberration frequency (total) | 1.000000e-06 |
| GCST90002389_184 | Lymphocyte percentage of white cells | 9.000000e-10 |
| GCST90002390_610 | Mean corpuscular hemoglobin | 4.000000e-09 |
| GCST90002392_591 | Mean corpuscular volume | 2.000000e-11 |
EFO canonical traits (5, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0007710 | cognitive decline measurement |
| EFO:0008336 | disease progression measurement |
| EFO:0009860 | chromosomal aberration frequency |
| EFO:0007993 | lymphocyte percentage of leukocytes |
| EFO:0004527 | mean corpuscular hemoglobin |
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D008133 | Long QT Syndrome | C14.280.067.565; C14.280.123.625; C16.131.240.400.715; C23.550.073.547 |
| D065886 | Neurodevelopmental Disorders | F03.625 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
41 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| trichostatin A | affects cotreatment, decreases expression, affects expression, increases expression | 3 |
| sodium arsenite | decreases expression, increases abundance | 2 |
| Hydrogen Peroxide | affects expression, increases expression | 2 |
| Phenylmercuric Acetate | affects cotreatment, decreases expression | 2 |
| Tetrachlorodibenzodioxin | decreases expression | 2 |
| Valproic Acid | affects expression, increases expression | 2 |
| TAK-243 | increases sumoylation | 1 |
| 2,4,6-tribromophenol | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | decreases expression | 1 |
| decabromobiphenyl ether | decreases expression | 1 |
| beta-lapachone | decreases expression | 1 |
| arsenite | decreases reaction, affects binding | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | increases expression | 1 |
| tetrabromobisphenol A | decreases expression | 1 |
| cupric chloride | increases expression | 1 |
| coumarin | decreases phosphorylation | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| ICG 001 | increases expression | 1 |
| abrine | increases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| pentabrominated diphenyl ether 100 | decreases expression | 1 |
| 2-(1H-indazol-4-yl)-6-(4-methanesulfonylpiperazin-1-ylmethyl)-4-morpholin-4-ylthieno(3,2-d)pyrimidine | increases expression, increases response to substance | 1 |
| jinfukang | affects cotreatment, decreases expression | 1 |
| Arsenic Trioxide | decreases expression | 1 |
| Acetaminophen | decreases expression | 1 |
| Arsenic | decreases expression, increases abundance | 1 |
| Benzene | increases expression | 1 |
Clinical trials (associated diseases)
268 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT04586348 | PHASE4 | UNKNOWN | Prenatal Iodine Supplementation and Early Childhood Neurodevelopment |
| NCT04873115 | PHASE4 | UNKNOWN | Double-blind, Placebo-controlled, Randomized Clinical Trial Comparing the Efficacy and Safety of Sialanar Plus orAl rehabiLitation Against Placebo Plus Oral Rehabilitation for chIldren and Adolescents With seVere Sialorrhoea and Neurodisabilties, |
| NCT02513940 | PHASE4 | COMPLETED | Influence of Testosterone Administration on Drug-Induced QT Interval Prolongation and Torsades de Pointes |
| NCT03834883 | PHASE4 | COMPLETED | Reducing the Risk of Drug-Induced QT Interval Lengthening in Women |
| NCT04169100 | PHASE4 | UNKNOWN | Novel Form of Acquired Long QT Syndrome |
| NCT04675788 | PHASE4 | COMPLETED | Novel Approaches for Minimizing Drug-Induced QT Interval Lengthening |
| NCT02559102 | PHASE3 | COMPLETED | Dexmedetomidine Sedation Versus General Anaesthesia for Inguinal Hernia Surgery in Infants |
| NCT02757079 | PHASE3 | COMPLETED | Study of the Efficacy and Safety of NPC-15 for Sleep Disorders of Children With Neurodevelopmental Disorders |
| NCT06915480 | PHASE3 | RECRUITING | Reducing Missed Appointments |
| NCT07377032 | PHASE3 | RECRUITING | TAP-GRIN: Interventional Study on Patients With GRIN-related Neurodevelopmental Disorders |
| NCT02909959 | PHASE2 | COMPLETED | Sulforaphane for the Treatment of Young Men With Autism Spectrum Disorder |
| NCT06081348 | PHASE2 | RECRUITING | Sertraline vs. Placebo in the Treatment of Anxiety in Children and AdoLescents With NeurodevelopMental Disorders |
| NCT06352372 | PHASE2 | COMPLETED | Safety and Efficacy of tPBM for Epileptiform Activity in Autism |
| NCT01648205 | PHASE2 | COMPLETED | Long-term Efficacy Study of Sodium Channel Blocker in LQT3 Patients |
| NCT02412709 | PHASE2 | UNKNOWN | Long QT Syndrome Screening in Newborns |
| NCT04581408 | PHASE2 | COMPLETED | Mutation-specific Therapy for the Long QT Syndrome |
| NCT00503191 | PHASE1 | COMPLETED | NeuroModulation Technique Treatment of Autism |
| NCT04475848 | PHASE1 | COMPLETED | A Study to Investigate the Safety, Tolerability, Pharmacokinetics, Pharmacodynamics and Food Effect of RO6953958 in Healthy Participants |
| NCT06300398 | PHASE1 | COMPLETED | IAMA-6 Oral Dose Study in Healthy Adults |
| NCT00316459 | PHASE1 | COMPLETED | Study Evaluating the Effects of Multiple Oral Doses of ERB-041 on Cardiac Repolarization in Healthy Subjects |
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Related Atlas pages
- Associated diseases: neurodevelopmental disorder
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): long QT syndrome, neurodevelopmental disorder, neurodevelopmental disorder with speech delay and behavioral abnormalities