ULBP1
gene geneOn this page
Also known as RAET1I
Summary
ULBP1 (UL16 binding protein 1, HGNC:14893) is a protein-coding gene on chromosome 6q25.1, encoding UL16-binding protein 1 (Q9BZM6). Binds and activates the KLRK1/NKG2D receptor, mediating natural killer cell cytotoxicity.
The protein encoded by this gene is a ligand of natural killer group 2, member D (NKG2D), an immune system-activating receptor on NK cells and T-cells. Binding of the encoded ligand to NKG2D leads to activation of several signal transduction pathways, including those of JAK2, STAT5, ERK and PI3K kinase/Akt. Also, in cytomegalovirus-infected cells, this ligand binds the UL16 glycoprotein and is prevented from activating the immune system. Three transcript variants encoding different isoforms have been found for this gene.
Source: NCBI Gene 80329 — RefSeq curated summary.
At a glance
- GWAS associations: 1
- Clinical variants (ClinVar): 71 total
- MANE Select transcript:
NM_025218
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:14893 |
| Approved symbol | ULBP1 |
| Name | UL16 binding protein 1 |
| Location | 6q25.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | RAET1I |
| Ensembl gene | ENSG00000111981 |
| Ensembl biotype | protein_coding |
| OMIM | 605697 |
| Entrez | 80329 |
Gene structure
Transcript identifiers
Ensembl transcripts: 2 — 2 protein_coding
ENST00000229708, ENST00000954265
RefSeq mRNA: 1 — MANE Select: NM_025218
NM_025218
CCDS: CCDS5223
Canonical transcript exons
ENST00000229708 — 5 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000896361 | 149963943 | 149964134 |
| ENSE00000896362 | 149970016 | 149970147 |
| ENSE00001403981 | 149971369 | 149973715 |
| ENSE00002440361 | 149968607 | 149968870 |
| ENSE00002467887 | 149969085 | 149969360 |
Expression profiles
Bgee: expression breadth ubiquitous, 111 present calls, max score 76.88.
FANTOM5 (CAGE): breadth broad, TPM avg 3.8429 / max 222.6965, expressed in 899 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 70506 | 2.4645 | 630 |
| 70504 | 0.9506 | 444 |
| 70505 | 0.4278 | 231 |
Top tissues by expression
249 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| stromal cell of endometrium | CL:0002255 | 76.88 | gold quality |
| pancreatic ductal cell | CL:0002079 | 73.02 | silver quality |
| right lung | UBERON:0002167 | 70.04 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 68.06 | gold quality |
| cerebellar cortex | UBERON:0002129 | 68.04 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 66.09 | gold quality |
| cortical plate | UBERON:0005343 | 65.98 | gold quality |
| cerebellum | UBERON:0002037 | 65.69 | gold quality |
| sperm | CL:0000019 | 65.06 | gold quality |
| male germ cell | CL:0000015 | 63.97 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 62.54 | gold quality |
| islet of Langerhans | UBERON:0000006 | 61.53 | gold quality |
| upper lobe of lung | UBERON:0008948 | 61.00 | gold quality |
| ventricular zone | UBERON:0003053 | 56.01 | gold quality |
| ganglionic eminence | UBERON:0004023 | 55.47 | gold quality |
| lung | UBERON:0002048 | 54.98 | gold quality |
| right testis | UBERON:0004534 | 53.10 | gold quality |
| ileal mucosa | UBERON:0000331 | 52.36 | gold quality |
| oocyte | CL:0000023 | 52.35 | gold quality |
| deltoid | UBERON:0001476 | 52.27 | gold quality |
| embryo | UBERON:0000922 | 52.20 | gold quality |
| parotid gland | UBERON:0001831 | 52.20 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 52.00 | gold quality |
| testis | UBERON:0000473 | 50.95 | gold quality |
| quadriceps femoris | UBERON:0001377 | 50.51 | gold quality |
| left testis | UBERON:0004533 | 49.68 | gold quality |
| vastus lateralis | UBERON:0001379 | 49.58 | gold quality |
| Brodmann (1909) area 46 | UBERON:0006483 | 49.30 | gold quality |
| cervix squamous epithelium | UBERON:0006922 | 49.20 | gold quality |
| hair follicle | UBERON:0002073 | 49.18 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-CURD-10 | no | 115.62 |
| E-ANND-3 | no | 2.21 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): HDAC3, SP1, SP3, TFAP2A
miRNA regulators (miRDB)
89 targeting ULBP1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-LET-7A-3P | 100.00 | 74.03 | 3932 |
| HSA-LET-7B-3P | 100.00 | 74.08 | 3913 |
| HSA-LET-7F-1-3P | 100.00 | 74.02 | 3928 |
| HSA-MIR-98-3P | 100.00 | 74.08 | 3907 |
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-520G-5P | 99.99 | 66.76 | 658 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-MIR-485-3P | 99.98 | 70.68 | 1585 |
| HSA-MIR-539-3P | 99.98 | 70.74 | 1616 |
| HSA-LET-7F-2-3P | 99.98 | 70.98 | 2588 |
| HSA-MIR-1185-1-3P | 99.98 | 71.04 | 2593 |
| HSA-MIR-1185-2-3P | 99.98 | 71.04 | 2593 |
| HSA-MIR-4789-5P | 99.98 | 70.76 | 2721 |
| HSA-MIR-4482-3P | 99.98 | 72.50 | 3147 |
| HSA-MIR-4666A-3P | 99.96 | 71.71 | 3434 |
| HSA-MIR-4487 | 99.96 | 64.58 | 1252 |
| HSA-MIR-96-5P | 99.95 | 72.80 | 2140 |
| HSA-MIR-335-3P | 99.93 | 73.36 | 4958 |
| HSA-MIR-4778-3P | 99.93 | 70.40 | 1818 |
| HSA-MIR-22-3P | 99.93 | 68.13 | 917 |
| HSA-MIR-381-3P | 99.93 | 71.87 | 2854 |
| HSA-MIR-12133 | 99.92 | 71.82 | 2006 |
| HSA-MIR-300 | 99.92 | 71.76 | 2856 |
| HSA-MIR-1271-5P | 99.91 | 71.99 | 1972 |
| HSA-MIR-124-3P | 99.89 | 73.74 | 3043 |
| HSA-MIR-506-3P | 99.89 | 73.55 | 3057 |
| HSA-MIR-4731-5P | 99.89 | 67.23 | 2537 |
| HSA-MIR-6780A-5P | 99.88 | 66.69 | 2776 |
| HSA-MIR-369-3P | 99.85 | 70.52 | 2264 |
Literature-anchored findings (GeneRIF, showing 22)
- ULBP1 binds to the NKG2D receptor and activates multiple signaling pathways in primary natural killer cells. (PMID:11777960)
- The NKG2D ligand ULBP1 is up-regulated and readily detectable intracellularly in the endoplasmic reticulum of human cytomegalovirus-infected fibroblasts, where it colocalizes with viral protein UL16. (PMID:12847260)
- ULBPs and MICA are expressed in lipid rafts at the cell surface of NK and T cells. (PMID:15051759)
- ULBP1 is a human ligand of the NKG2D receptor (PMID:16901903)
- As NKG2D ligand, ULBP1 are expressed on immature dendritic cells and plays an important role in the cytotoxic effect of NK cells against iDC. (PMID:18394338)
- The selective induction of ULBP1 expression by proteasome inhibitor drugs, along with variable NKG2D ligand expression by human tumor cells, indicates that NKG2D ligand genes are independently regulated. (PMID:19414815)
- Data show that the protease NS3/4A of HCV down-regulates ULBP1 expression by inhibiting the transcription of ULBP1. (PMID:19500498)
- Vpr specifically induces surface expression of the unique-long 16 binding proteins (ULBP)-1 and ULBP-2, but not ULBP-3 (PMID:19798433)
- Data show that ULBP1, TFR2 and IFITM1 were associated with increased susceptibility to Vgamma9Vdelta2 T-cell cytotoxicity. (PMID:20220060)
- These results identify Mult1 as a target for the MARCH family of E3 ligases (PMID:20870941)
- recombinant ULBP1 fused to CD45 caused a reduction in cytotoxicity and degranulation by NK cells, implying a role for receptor ligand distribution in the activation of NK cell responses (PMID:21464092)
- recurrence-free survival of patients with ULBP1-negative hepatocellular carcinoma (HCC) was significantly shorter than that of patients with ULBP1-positive HCC (PMID:21756848)
- Findings define the involvement of p53 in the regulation of ULBP1 and ULBP2 which enhance NK cell-mediated target recognition. (PMID:21764762)
- This study provides for the first time, the c-Myc dependent regulation of NKG2D ligands, ULBP1/2/3 in acute myeloid leukemia. (PMID:24677544)
- expression determines intrinsic acute myeloid leukemia susceptibility to allogeneic V[gamma]9V[delta]2 T cells (PMID:24911793)
- ATF4 drives ULBP1 gene expression in cancer cell lines, while the RNA-binding protein RBM4 supports ULBP1 expression by suppressing a novel alternatively spliced isoform of ULBP1 mRNA. (PMID:26565589)
- we show that Simian Virus 40 (SV40)…evades NK cell attack through the down regulation of…ULBP1 (PMID:26992229)
- Epithelial-mesenchymal transition may be involved in the immune evasion of circulating gastric tumor cells via downregulation of ULBP1. (PMID:32077634)
- UL16-Binding Protein 1 Induced HTR-8/SVneo Autophagy via NF-kappaB Suppression Mediated by TNF-alpha Secreted through uNK Cells. (PMID:32626772)
- Human Cytomegalovirus UL24 and UL43 Cooperate to Modulate the Expression of Immunoregulatory UL16 Binding Protein 1. (PMID:36179070)
- Knockdown of the UL-16 binding protein 1 promotes osteoblast differentiation of human mesenchymal stem cells by activating the SMAD2/3 pathway. (PMID:38481217)
- Human esophageal cancer stem-like cells escape the cytotoxicity of natural killer cells via down-regulation of ULBP-1. (PMID:39103915)
Cross-species orthologs
12 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | mhc1laa | ENSDARG00000016056 |
| danio_rerio | mhc1lba | ENSDARG00000016227 |
| danio_rerio | mhc1lda | ENSDARG00000023203 |
| danio_rerio | ENSDARG00000051710 | |
| danio_rerio | ENSDARG00000051711 | |
| danio_rerio | mhc1lfa | ENSDARG00000051712 |
| danio_rerio | mhc1lga | ENSDARG00000051713 |
| danio_rerio | mhc1lca | ENSDARG00000055813 |
| danio_rerio | mhc1lja | ENSDARG00000096830 |
| danio_rerio | si:dkey-52p2.5 | ENSDARG00000096940 |
| danio_rerio | mhc1lla | ENSDARG00000096977 |
| mus_musculus | Ulbp1 | ENSMUSG00000079685 |
Paralogs (22): HFE (ENSG00000010704), FCGRT (ENSG00000104870), ULBP2 (ENSG00000131015), ULBP3 (ENSG00000131019), MR1 (ENSG00000153029), RAET1L (ENSG00000155918), CD1D (ENSG00000158473), CD1A (ENSG00000158477), CD1C (ENSG00000158481), CD1B (ENSG00000158485), CD1E (ENSG00000158488), AZGP1 (ENSG00000160862), RAET1E (ENSG00000164520), RAET1G (ENSG00000203722), MICB (ENSG00000204516), MICA (ENSG00000204520), HLA-C (ENSG00000204525), HLA-E (ENSG00000204592), HLA-G (ENSG00000204632), HLA-F (ENSG00000204642), HLA-A (ENSG00000206503), HLA-B (ENSG00000234745)
Protein
Protein identifiers
UL16-binding protein 1 — Q9BZM6 (reviewed: Q9BZM6)
Alternative names: ALCAN-beta, NKG2D ligand 1, Retinoic acid early transcript 1I
All UniProt accessions (1): Q9BZM6
UniProt curated annotations — full annotation on UniProt →
Function. Binds and activates the KLRK1/NKG2D receptor, mediating natural killer cell cytotoxicity.
Subunit / interactions. Interacts with KLRK1/NKG2D. Does not bind to beta2-microglobulin. (Microbial infection) In CMV-infected cells, interacts with the viral glycoprotein UL16; this interaction causes ULBP1 retention in the endoplasmic reticulum and cis-Golgi and prevents binding to and activation of KLRK1/NKG2D, providing CMV with an immune evasion mechanism.
Subcellular location. Cell membrane. Endoplasmic reticulum.
Tissue specificity. Expressed in T-cells, B-cells, erythroleukemia cell lines and in a wide range of tissues including heart, brain, lung, liver, testis, lymph node, thymus, tonsil and bone marrow. Also found in fetal heart, brain, lung and liver.
Miscellaneous. UL16-binding proteins (ULBPs) are unusual members of the extended MHC class I superfamily. They do not contain the alpha 3 domain and lack a transmembrane domain.
Similarity. Belongs to the MHC class I family.
RefSeq proteins (1): NP_079494* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR011161 | MHC_I-like_Ag-recog | Domain |
| IPR011162 | MHC_I/II-like_Ag-recog | Homologous_superfamily |
| IPR037055 | MHC_I-like_Ag-recog_sf | Homologous_superfamily |
| IPR050208 | MHC_class-I_related | Family |
Pfam: PF00129
UniProt features (10 total): region of interest 2, disulfide bond 2, signal peptide 1, chain 1, propeptide 1, lipid moiety-binding region 1, glycosylation site 1, sequence variant 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9BZM6-F1 | 81.81 | 0.53 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (1): 216
Disulfide bonds (2): 50–66, 127–190
Glycosylation sites (1): 82
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-198933 | Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell |
MSigDB gene sets: 131 (showing top):
GOBP_POSITIVE_REGULATION_OF_ADAPTIVE_IMMUNE_RESPONSE, BENPORATH_ES_WITH_H3K27ME3, REACTOME_ADAPTIVE_IMMUNE_SYSTEM, GOBP_REGULATION_OF_ADAPTIVE_IMMUNE_RESPONSE, PEREZ_TP63_TARGETS, GOCC_CELL_SURFACE, GOBP_LEUKOCYTE_MEDIATED_CYTOTOXICITY, GOBP_ANTIGEN_PROCESSING_AND_PRESENTATION_VIA_MHC_CLASS_IB, GOBP_ANTIGEN_PROCESSING_AND_PRESENTATION_OF_PEPTIDE_ANTIGEN, GOBP_LEUKOCYTE_MEDIATED_IMMUNITY, GOBP_POSITIVE_REGULATION_OF_T_CELL_MEDIATED_CYTOTOXICITY, chr6q25, GOBP_REGULATION_OF_IMMUNE_RESPONSE, GOBP_DEFENSE_RESPONSE_TO_OTHER_ORGANISM, GOBP_LYMPHOCYTE_MEDIATED_IMMUNITY
GO Biological Process (8): positive regulation of T cell mediated cytotoxicity (GO:0001916), antigen processing and presentation of endogenous peptide antigen via MHC class Ib (GO:0002476), antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-independent (GO:0002486), immune response (GO:0006955), natural killer cell activation (GO:0030101), natural killer cell mediated cytotoxicity (GO:0042267), immune system process (GO:0002376), signal transduction (GO:0007165)
GO Molecular Function (3): natural killer cell lectin-like receptor binding (GO:0046703), receptor ligand activity (GO:0048018), protein binding (GO:0005515)
GO Cellular Component (7): obsolete extracellular space (GO:0005615), endoplasmic reticulum (GO:0005783), cytosol (GO:0005829), plasma membrane (GO:0005886), external side of plasma membrane (GO:0009897), membrane (GO:0016020), side of membrane (GO:0098552)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Adaptive Immune System | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| signaling receptor binding | 2 |
| cytoplasm | 2 |
| membrane | 2 |
| positive regulation of leukocyte mediated cytotoxicity | 1 |
| T cell mediated cytotoxicity | 1 |
| regulation of T cell mediated cytotoxicity | 1 |
| positive regulation of T cell mediated immunity | 1 |
| antigen processing and presentation of peptide antigen via MHC class Ib | 1 |
| antigen processing and presentation of endogenous peptide antigen | 1 |
| antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway | 1 |
| immune system process | 1 |
| response to stimulus | 1 |
| lymphocyte activation | 1 |
| leukocyte mediated cytotoxicity | 1 |
| natural killer cell mediated immunity | 1 |
| biological_process | 1 |
| cell communication | 1 |
| cellular process | 1 |
| signaling | 1 |
| regulation of cellular process | 1 |
| cellular response to stimulus | 1 |
| signal transduction | 1 |
| signaling receptor activator activity | 1 |
| binding | 1 |
| endomembrane system | 1 |
| intracellular membrane-bounded organelle | 1 |
| cell periphery | 1 |
| plasma membrane | 1 |
| cell surface | 1 |
| side of membrane | 1 |
| leaflet of membrane bilayer | 1 |
Protein interactions and networks
STRING
666 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ULBP1 | KLRK1 | P26718 | 999 |
| ULBP1 | MICB | P79525 | 963 |
| ULBP1 | CD226 | Q15762 | 910 |
| ULBP1 | NCR1 | O76036 | 904 |
| ULBP1 | HCST | Q9UBK5 | 864 |
| ULBP1 | NCR3 | O14931 | 823 |
| ULBP1 | NCR2 | O95944 | 803 |
| ULBP1 | LILRB1 | Q8NHL6 | 792 |
| ULBP1 | MICA | P79506 | 750 |
| ULBP1 | KLRD1 | Q13241 | 742 |
| ULBP1 | NECTIN2 | Q92692 | 740 |
| ULBP1 | CCR8 | P51685 | 725 |
| ULBP1 | PVR | P15151 | 721 |
| ULBP1 | CD48 | P09326 | 707 |
| ULBP1 | B2M | P01884 | 634 |
IntAct
16 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| TNFSF8 | TOR1B | psi-mi:“MI:0914”(association) | 0.640 |
| SLC39A5 | FAM171A2 | psi-mi:“MI:0914”(association) | 0.640 |
| SLC39A5 | TMEM223 | psi-mi:“MI:0914”(association) | 0.530 |
| ULBP1 | IGLL5 | psi-mi:“MI:0914”(association) | 0.530 |
| TNFSF8 | LGALS8 | psi-mi:“MI:0914”(association) | 0.530 |
| KLRK1 | ULBP1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| TNFSF8 | NME4 | psi-mi:“MI:0914”(association) | 0.350 |
| CEACAM21 | GAPDHS | psi-mi:“MI:0914”(association) | 0.350 |
| RHCG | TMEM223 | psi-mi:“MI:0914”(association) | 0.350 |
| SLC16A10 | STXBP3 | psi-mi:“MI:0914”(association) | 0.350 |
| SLC2A1 | ANXA2P2 | psi-mi:“MI:0914”(association) | 0.350 |
| SLC39A12 | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| SLC9A9 | PODXL | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (23): ULBP3 (Affinity Capture-MS), GPC3 (Affinity Capture-MS), ULBP1 (Affinity Capture-MS), IGLL5 (Affinity Capture-MS), CPM (Affinity Capture-MS), ULBP1 (Affinity Capture-MS), ULBP1 (Synthetic Lethality), GPC3 (Affinity Capture-MS), ULBP1 (Affinity Capture-MS), IGLL5 (Affinity Capture-MS), THEM4 (Affinity Capture-MS), CPM (Affinity Capture-MS), ULBP3 (Affinity Capture-MS), ULBP1 (Affinity Capture-MS), ULBP3 (Co-fractionation)
ESM2 similar proteins: A0A0G2K7V7, C1ITJ8, O08602, O08603, O08604, O19477, O35799, O97945, P01572, P01573, P05001, P05011, P06799, P07349, P07350, P07351, P09235, P14431, P14432, P35849, P43626, P43627, P43628, P43632, P60018, P70387, P81255, Q29980, Q29983, Q30201, Q5VY80, Q60I18, Q61716, Q6H3X3, Q80SS5, Q80SU4, Q8HWB0, Q8HWE5, Q8HWE7, Q8N109
Diamond homologs: Q5VY80, Q6H3X3, Q8TD07, Q9BZM4, Q9BZM5, Q9BZM6
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
71 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 50 |
| Likely benign | 8 |
| Benign | 7 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
621 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 6:149968601:CCACA:C | acceptor_loss | 1.0000 |
| 6:149968602:CACA:C | acceptor_loss | 1.0000 |
| 6:149968604:CA:C | acceptor_loss | 1.0000 |
| 6:149968605:A:AG | acceptor_gain | 1.0000 |
| 6:149968605:A:G | acceptor_loss | 1.0000 |
| 6:149968606:G:A | acceptor_loss | 1.0000 |
| 6:149968606:G:GA | acceptor_gain | 1.0000 |
| 6:149968606:GAC:G | acceptor_gain | 1.0000 |
| 6:149968606:GACA:G | acceptor_gain | 1.0000 |
| 6:149968606:GACAC:G | acceptor_gain | 1.0000 |
| 6:149970128:A:T | donor_gain | 1.0000 |
| 6:149965415:G:GT | donor_gain | 0.9900 |
| 6:149965415:G:T | donor_gain | 0.9900 |
| 6:149965439:G:GT | donor_gain | 0.9900 |
| 6:149968603:A:AG | acceptor_gain | 0.9900 |
| 6:149968604:C:G | acceptor_gain | 0.9900 |
| 6:149968606:GA:G | acceptor_gain | 0.9900 |
| 6:149965340:GCAC:G | donor_gain | 0.9800 |
| 6:149965341:C:T | donor_gain | 0.9800 |
| 6:149969361:G:GG | donor_gain | 0.9800 |
| 6:149970122:A:G | donor_gain | 0.9700 |
| 6:149965426:G:GT | donor_gain | 0.9600 |
| 6:149965448:G:GT | donor_gain | 0.9600 |
| 6:149965440:A:T | donor_gain | 0.9500 |
| 6:149965449:A:T | donor_gain | 0.9500 |
| 6:149969202:GAAA:G | acceptor_gain | 0.9500 |
| 6:149969360:AG:A | donor_loss | 0.9500 |
| 6:149969361:GTA:G | donor_loss | 0.9500 |
| 6:149969362:T:TC | donor_loss | 0.9500 |
| 6:149969363:AAGT:A | donor_loss | 0.9500 |
AlphaMissense
1614 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 6:149969156:T:C | F141L | 0.950 |
| 6:149969158:C:A | F141L | 0.950 |
| 6:149969158:C:G | F141L | 0.950 |
| 6:149968702:T:C | F61L | 0.946 |
| 6:149968704:T:A | F61L | 0.946 |
| 6:149968704:T:G | F61L | 0.946 |
| 6:149969324:T:C | F197L | 0.934 |
| 6:149969326:T:A | F197L | 0.934 |
| 6:149969326:T:G | F197L | 0.934 |
| 6:149969177:T:C | F148L | 0.924 |
| 6:149969179:C:A | F148L | 0.924 |
| 6:149969179:C:G | F148L | 0.924 |
| 6:149969251:G:C | W172C | 0.924 |
| 6:149969251:G:T | W172C | 0.924 |
| 6:149969249:T:A | W172R | 0.922 |
| 6:149969249:T:C | W172R | 0.922 |
| 6:149969157:T:C | F141S | 0.916 |
| 6:149969186:T:C | F151L | 0.909 |
| 6:149969188:T:A | F151L | 0.909 |
| 6:149969188:T:G | F151L | 0.909 |
| 6:149969207:T:A | W158R | 0.905 |
| 6:149969207:T:C | W158R | 0.905 |
| 6:149969150:T:A | W139R | 0.896 |
| 6:149969150:T:C | W139R | 0.896 |
| 6:149968782:G:C | W87C | 0.885 |
| 6:149968782:G:T | W87C | 0.885 |
| 6:149969152:G:C | W139C | 0.882 |
| 6:149969152:G:T | W139C | 0.882 |
| 6:149969109:T:C | M125T | 0.878 |
| 6:149968630:T:C | F37L | 0.876 |
dbSNP variants (sampled 300 via entrez): RS1000192900 (6:149969843 A>C,G), RS1000641477 (6:149966442 G>A,C), RS1001408133 (6:149962429 A>G,T), RS1001750842 (6:149971651 G>A), RS1002409124 (6:149963553 G>C), RS1002440232 (6:149963767 A>C), RS1002485036 (6:149972983 C>T), RS1002638685 (6:149968514 G>A,C), RS1002976736 (6:149968322 T>A), RS1003409212 (6:149964499 G>A,T), RS1003491871 (6:149974191 G>T), RS1003753801 (6:149973939 C>T), RS1004418964 (6:149965837 A>C), RS1004427572 (6:149968298 T>C), RS1004651490 (6:149970598 G>A)
Disease associations
OMIM: gene MIM:605697 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000823_7 | Radiation response | 7.000000e-06 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
53 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Resveratrol | affects cotreatment, decreases expression, increases expression | 3 |
| arsenite | affects binding, decreases reaction, increases methylation | 2 |
| sodium arsenite | decreases expression, increases expression | 2 |
| rottlerin | increases expression, affects binding, decreases reaction | 2 |
| Erlotinib Hydrochloride | affects binding, decreases reaction, increases expression | 2 |
| Gefitinib | affects binding, decreases reaction, increases expression | 2 |
| Arsenic Trioxide | increases expression | 2 |
| Estradiol | affects cotreatment, decreases expression, increases expression | 2 |
| Tetradecanoylphorbol Acetate | affects binding, decreases reaction, increases expression | 2 |
| Tobacco Smoke Pollution | increases expression | 2 |
| propionaldehyde | increases expression | 1 |
| bisphenol A | increases expression | 1 |
| 2-methyl-4-isothiazolin-3-one | increases expression | 1 |
| butyraldehyde | increases expression | 1 |
| tetrabromobisphenol A | increases expression | 1 |
| perfluorooctanoic acid | increases expression | 1 |
| potassium chromate(VI) | increases expression | 1 |
| pentanal | increases expression | 1 |
| mithramycin A | increases expression | 1 |
| Go 6976 | increases expression | 1 |
| bisindolylmaleimide | increases expression | 1 |
| chloropicrin | increases expression | 1 |
| ICG 001 | increases expression | 1 |
| abrine | decreases expression | 1 |
| 2-methyl-2H-pyrazole-3-carboxylic acid (2-methyl-4-o-tolylazophenyl)amide | increases expression, affects cotreatment | 1 |
| licochalcone B | increases expression | 1 |
| incobotulinumtoxinA | decreases expression | 1 |
| prothioconazole | increases expression | 1 |
| NSC668394 | increases expression | 1 |
| demycarosyl-3D-digitoxosylmithramycin SK | decreases expression | 1 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.