UMPS
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Also known as OPRTODC
Summary
UMPS (uridine monophosphate synthetase, HGNC:12563) is a protein-coding gene on chromosome 3q21.2, encoding Uridine 5’-monophosphate synthase (P11172). Bifunctional enzyme catalyzing the last two steps of de novo pyrimidine biosynthesis, orotate phosphoribosyltransferase (OPRT), which converts orotate to orotidine-5’-monophosphate (OMP), and orotidine-5’-monophosphate decarboxylase (ODC), the terminal enzymatic reaction that de…. It is a selective cancer dependency (DepMap: 45.9% of cell lines).
This gene encodes a uridine 5’-monophosphate synthase. The encoded protein is a bifunctional enzyme that catalyzes the final two steps of the de novo pyrimidine biosynthetic pathway. The first reaction is carried out by the N-terminal enzyme orotate phosphoribosyltransferase which converts orotic acid to orotidine-5’-monophosphate. The terminal reaction is carried out by the C-terminal enzyme OMP decarboxylase which converts orotidine-5’-monophosphate to uridine monophosphate. Defects in this gene are the cause of hereditary orotic aciduria. Alternate splicing results in multiple transcript variants.
Source: NCBI Gene 7372 — RefSeq curated summary.
At a glance
- Gene–disease (curated): orotic aciduria (Definitive, GenCC)
- GWAS associations: 10
- Clinical variants (ClinVar): 293 total — 3 pathogenic, 2 likely-pathogenic
- Phenotypes (HPO): 27
- Druggable target: yes — 1 molecules with ChEMBL bioactivity
- Cancer dependency (DepMap): dependent in 45.9% of screened cell lines
- MANE Select transcript:
NM_000373
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:12563 |
| Approved symbol | UMPS |
| Name | uridine monophosphate synthetase |
| Location | 3q21.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | OPRT, ODC |
| Ensembl gene | ENSG00000114491 |
| Ensembl biotype | protein_coding |
| OMIM | 613891 |
| Entrez | 7372 |
Gene structure
Transcript identifiers
Ensembl transcripts: 17 — 8 protein_coding, 6 nonsense_mediated_decay, 2 protein_coding_CDS_not_defined, 1 retained_intron
ENST00000232607, ENST00000460034, ENST00000462091, ENST00000467167, ENST00000474588, ENST00000479719, ENST00000487622, ENST00000495751, ENST00000497791, ENST00000498715, ENST00000628619, ENST00000876661, ENST00000876662, ENST00000876663, ENST00000876664, ENST00000924427, ENST00000947786
RefSeq mRNA: 1 — MANE Select: NM_000373
NM_000373
CCDS: CCDS3029
Canonical transcript exons
ENST00000232607 — 6 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001382696 | 124743915 | 124749273 |
| ENSE00003478708 | 124740024 | 124740199 |
| ENSE00003566655 | 124735093 | 124735246 |
| ENSE00003635320 | 124742152 | 124742266 |
| ENSE00003663863 | 124737568 | 124738239 |
| ENSE00003693247 | 124730452 | 124730627 |
Expression profiles
Bgee: expression breadth ubiquitous, 279 present calls, max score 91.23.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 23.7133 / max 509.6753, expressed in 1794 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 38325 | 23.7133 | 1794 |
Top tissues by expression
294 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| adrenal tissue | UBERON:0018303 | 91.23 | gold quality |
| ventricular zone | UBERON:0003053 | 89.34 | gold quality |
| ganglionic eminence | UBERON:0004023 | 89.30 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 89.24 | gold quality |
| islet of Langerhans | UBERON:0000006 | 89.07 | gold quality |
| calcaneal tendon | UBERON:0003701 | 88.80 | gold quality |
| right lobe of liver | UBERON:0001114 | 88.69 | gold quality |
| embryo | UBERON:0000922 | 88.47 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 88.42 | gold quality |
| gingival epithelium | UBERON:0001949 | 88.08 | gold quality |
| stromal cell of endometrium | CL:0002255 | 87.98 | gold quality |
| gingiva | UBERON:0001828 | 87.56 | gold quality |
| liver | UBERON:0002107 | 87.13 | gold quality |
| esophagus mucosa | UBERON:0002469 | 87.02 | gold quality |
| right adrenal gland | UBERON:0001233 | 86.99 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 86.96 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 86.67 | gold quality |
| squamous epithelium | UBERON:0006914 | 86.40 | gold quality |
| left adrenal gland | UBERON:0001234 | 86.33 | gold quality |
| rectum | UBERON:0001052 | 86.32 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 86.32 | gold quality |
| hair follicle | UBERON:0002073 | 86.26 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 85.98 | gold quality |
| adrenal gland | UBERON:0002369 | 85.93 | gold quality |
| pancreas | UBERON:0001264 | 85.81 | gold quality |
| tendon | UBERON:0000043 | 85.48 | gold quality |
| placenta | UBERON:0001987 | 85.27 | gold quality |
| body of pancreas | UBERON:0001150 | 84.87 | gold quality |
| colonic epithelium | UBERON:0000397 | 84.85 | gold quality |
| palpebral conjunctiva | UBERON:0001812 | 84.83 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 6.92 |
| E-MTAB-4850 | no | 545.18 |
| E-MTAB-6142 | no | 291.43 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): E2F4
miRNA regulators (miRDB)
149 targeting UMPS, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-4747-5P | 100.00 | 67.90 | 2681 |
| HSA-MIR-5196-5P | 100.00 | 67.98 | 2761 |
| HSA-MIR-3924 | 100.00 | 72.09 | 2394 |
| HSA-MIR-656-3P | 100.00 | 72.15 | 2788 |
| HSA-MIR-4795-3P | 100.00 | 74.62 | 4024 |
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-MIR-126-5P | 100.00 | 72.71 | 3180 |
| HSA-MIR-4476 | 100.00 | 68.18 | 2030 |
| HSA-MIR-6876-5P | 100.00 | 67.68 | 2126 |
| HSA-MIR-4425 | 100.00 | 67.59 | 1049 |
| HSA-MIR-4713-3P | 100.00 | 65.92 | 505 |
| HSA-MIR-371B-5P | 99.99 | 75.34 | 4759 |
| HSA-MIR-3667-3P | 99.99 | 67.17 | 1636 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-520G-5P | 99.99 | 66.76 | 658 |
| HSA-MIR-373-5P | 99.98 | 75.36 | 4753 |
| HSA-MIR-616-5P | 99.98 | 75.58 | 4775 |
| HSA-MIR-485-3P | 99.98 | 70.68 | 1585 |
| HSA-MIR-539-3P | 99.98 | 70.74 | 1616 |
| HSA-MIR-146A-5P | 99.96 | 68.93 | 988 |
| HSA-MIR-146B-5P | 99.96 | 69.13 | 977 |
| HSA-MIR-548AJ-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-548X-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-5688 | 99.96 | 73.23 | 4504 |
| HSA-MIR-495-3P | 99.96 | 72.81 | 4197 |
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 45.9% of screened cell lines.
Literature-anchored findings (GeneRIF, showing 30)
- expression of OPRT gene and the OPRT/dihydropyrimidine dehydrogenase ratio might be useful as predictive parameters for the efficacy of fluoropyrimidine-based chemotherapy for metastatic colorectal cancer (PMID:14562021)
- thymidylate synthase and orotate phosphoribosyl transferase, but not dihydropyrimidine dehydrogenase, are more highly expressed in prostate cancer than in benign prostatic hyperplasia (PMID:15999119)
- orotate phosphoribosyl transferase has a role in lymph node metastasis of gastric cancer (PMID:16142362)
- The investigated SNPs of OPRT may have no major influence on 5-FU sensitivity. (PMID:16328050)
- The OPRT Gly213Ala polymorphism seems to be a useful marker for predicting toxicity to bolus 5-FU chemotherapy. (PMID:16818689)
- Overexpression of the OPRT gene plays an important role in the antiproliferative effect of 5-FU. (PMID:17237621)
- High expression of OPRT is associated with the response to adjuvant chemotherapy in human pancreatic cancer (PMID:17549346)
- data suggest that OPRT is involved in early events of pancreatic and gallbladder carcinogenesis and invasion of hepatocellular carcinomas (PMID:17607371)
- decreased the sensitivities of the cultured tumor cells to 5-FU. These results suggest that the OPRT expression level in tumors is an additional determinant of the efficacy of 5-FU. (PMID:17854773)
- OPRT activity levels in tumor tissue may be prognostic factor for survival in colorectal carcinoma with radical resection and 5-FU chemotherapy;postoperative survival was significantly better in patients with high OPRT activity (PMID:18597678)
- determination of OPRT levels in gastric carcinoma tissue enables to predict the response to S-1-based neoadjuvant/adjuvant chemotherapy (PMID:18633253)
- orotate phosphoribosyltransferase is involved in the invasion and metastasis of colorectal carcinoma (PMID:18949394)
- decreased activity of OPRT plays an important role in the acquired resistance of gastric cancer cells towards 5-FU (PMID:19020740)
- head & neck, gastric, colorectal, breast, lung & pancreatic cancer were examined; findings show mRNA expression & protein level of thymidylate synthase, dihydropyrimidine dehydrogenase & orotate phosphoribosyltransferase differed according to cancer type (PMID:19020767)
- Immunohistochemical staining for Orotate phosphoribosyl transferase (OPRT)revealed strong expression of OPRT in prostate cancer cells. There was a significant correlation between OPRT mRNA expression levels and the tumor pathological grade (PMID:19082440)
- High orotate phosphoribosyltransferase gene expression is associated with complete response to chemoradiotherapy in patients with squamous cell carcinoma of the esophagus (PMID:19307741)
- [review] It is confirmed that the type I defect in hereditary orotic aciduria is caused by loss of uridine monophosphate (UMP)synthase activity (PMID:19562503)
- patients who developed distant recurrence of rectal cancer were found to have significantly higher intratumoral thymidylate synthase (TS), dihydropyrimidine dehydrogenase (DPD) and orotate phosphoribosyl transferase (OPRT) (PMID:19724871)
- Increased orotate phosphoribosyltransferase expression is associated with bladder cancers. (PMID:20112501)
- novel phosphoribosyltransferase transition states (PMID:20527751)
- orotate phosphoribosyl transferase/DPD ratio has a relation to cancer staging and survival rate. (PMID:20647710)
- Although no association was detected between UMPS variants and gastrointestinal cancer risk in Caucasians, polymerase chain reaction-RFLP with BsrI digestion and DHPLC set up at 59 degrees C are reliable and cost-effective methods to genotype UMPS. (PMID:21631301)
- The observed mutations, aberrant splicing and downregulation of UMPS represent novel mechanisms for acquired 5-FU resistance in colorectal cancer (PMID:22249354)
- High expression levels of orotate phosphoribosyl transferase and thymidylate synthase in colorectal cancer appear to be significantly involved in metastasis after curative surgery (PMID:22641663)
- OPRT expression in colorectal carcinoma tissues is not correlated with the toxicity of 5-FU, but OPRT expression in the normal tissues can help predict the toxicity associated with 5-FU. (PMID:22931617)
- OPRT transition state analogues identify crucial components of potent inhibitors targeting OPRT enzymes. (PMID:24158442)
- Partial UMPS-deficiency should be included in the differential diagnosis of mild orotic aciduria. (PMID:28205048)
- The UMPS 638 CC genotype might be a candidate biomarker predicting toxicity in patients receiving tegafur-uracil/leucovorin-based preoperative chemoradiation for locally advanced rectal cancer (PMID:28347333)
- LncRNA SNORD3A specifically sensitizes breast cancer cells to 5-FU by sponging miR-185-5p to enhance UMPS expression. (PMID:32382150)
- Human uridine 5’-monophosphate synthase stores metabolic potential in inactive biomolecular condensates. (PMID:36708921)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | umps | ENSDARG00000012215 |
| mus_musculus | Umps | ENSMUSG00000022814 |
| rattus_norvegicus | Umps | ENSRNOG00000001797 |
| drosophila_melanogaster | r-l | FBGN0003257 |
| caenorhabditis_elegans | WBGENE00011559 |
Protein
Protein identifiers
Uridine 5’-monophosphate synthase — P11172 (reviewed: P11172)
All UniProt accessions (6): A8K5J1, E9PFD2, P11172, F2Z303, F2Z3P2, F8WDG4
UniProt curated annotations — full annotation on UniProt →
Function. Bifunctional enzyme catalyzing the last two steps of de novo pyrimidine biosynthesis, orotate phosphoribosyltransferase (OPRT), which converts orotate to orotidine-5’-monophosphate (OMP), and orotidine-5’-monophosphate decarboxylase (ODC), the terminal enzymatic reaction that decarboxylates OMP to uridine monophosphate (UMP).
Subunit / interactions. Homodimer; dimerization is required for enzymatic activity.
Disease relevance. Orotic aciduria 1 (ORAC1) [MIM:258900] A disorder of pyrimidine metabolism resulting in megaloblastic anemia and orotic acid crystalluria that is frequently associated with some degree of physical and intellectual disability. A minority of cases have additional features, particularly congenital malformations and immune deficiencies. The disease is caused by variants affecting the gene represented in this entry.
Pathway. Pyrimidine metabolism; UMP biosynthesis via de novo pathway; UMP from orotate: step 1/2. Pyrimidine metabolism; UMP biosynthesis via de novo pathway; UMP from orotate: step 2/2.
Similarity. In the N-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family. In the C-terminal section; belongs to the OMP decarboxylase family.
Isoforms (4)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P11172-1 | 1 | yes |
| P11172-2 | 2 | |
| P11172-3 | 3 | |
| P11172-4 | 4 |
RefSeq proteins (1): NP_000364* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000836 | PRTase_dom | Domain |
| IPR001754 | OMPdeCOase_dom | Domain |
| IPR004467 | Or_phspho_trans_dom | Domain |
| IPR011060 | RibuloseP-bd_barrel | Homologous_superfamily |
| IPR013785 | Aldolase_TIM | Homologous_superfamily |
| IPR014732 | OMPdecase | Family |
| IPR018089 | OMPdecase_AS | Active_site |
| IPR023031 | OPRT | Family |
| IPR029057 | PRTase-like | Homologous_superfamily |
Pfam: PF00156, PF00215
Enzyme classification (BRENDA):
- EC 4.1.1.23 — orotidine-5’-phosphate decarboxylase (BRENDA: 27 organisms, 122 substrates, 165 inhibitors, 129 Km, 109 kcat entries)
Substrate kinetics (BRENDA)
7 substrates with measured Km, best-characterized 7. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| OROTIDINE 5’-PHOSPHATE | 0.0002–30 | 82 |
| 5-FLUOROOROTIDINE 5’-PHOSPHATE | 0.0008–1.1 | 17 |
| 2’-DEOXYOROTIDINE 5’-PHOSPHATE | 0.0052–0.01 | 4 |
| OROTIDINE 5’-MONOPHOSPHATE | 0.0016–0.13 | 4 |
| 4-THIOOROTIDINE 5’-PHOSPHATE | 0.02 | 1 |
| 5-AZAOROTIDINE 5’-PHOSPHATE | 0.03 | 1 |
| OROTIDINE | 0.0007 | 1 |
Catalyzed reactions (Rhea), 2 shown:
- orotidine 5’-phosphate + diphosphate = orotate + 5-phospho-alpha-D-ribose 1-diphosphate (RHEA:10380)
- orotidine 5’-phosphate + H(+) = UMP + CO2 (RHEA:11596)
UniProt features (88 total): helix 21, strand 20, binding site 16, turn 8, sequence variant 6, region of interest 3, modified residue 3, splice variant 3, active site 3, sequence conflict 2, initiator methionine 1, chain 1, mutagenesis site 1
Structure
Experimental structures (PDB)
72 structures, top 30 by resolution.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 9HDW | X-RAY DIFFRACTION | 0.83 |
| 9HDS | X-RAY DIFFRACTION | 0.86 |
| 7OUZ | X-RAY DIFFRACTION | 0.9 |
| 7ASQ | X-RAY DIFFRACTION | 0.95 |
| 7OTU | X-RAY DIFFRACTION | 0.95 |
| 7OV0 | X-RAY DIFFRACTION | 0.95 |
| 9HY0 | X-RAY DIFFRACTION | 0.95 |
| 7AM9 | X-RAY DIFFRACTION | 0.99 |
| 6ZWY | X-RAY DIFFRACTION | 1 |
| 6ZX1 | X-RAY DIFFRACTION | 1 |
| 9HDU | X-RAY DIFFRACTION | 1 |
| 6YWT | X-RAY DIFFRACTION | 1.05 |
| 7OQF | X-RAY DIFFRACTION | 1.05 |
| 7OQM | X-RAY DIFFRACTION | 1.05 |
| 9HDX | X-RAY DIFFRACTION | 1.05 |
| 3EWW | X-RAY DIFFRACTION | 1.1 |
| 3EWY | X-RAY DIFFRACTION | 1.1 |
| 6YWU | X-RAY DIFFRACTION | 1.1 |
| 7OQK | X-RAY DIFFRACTION | 1.1 |
| 7OQN | X-RAY DIFFRACTION | 1.1 |
| 6ZX3 | X-RAY DIFFRACTION | 1.15 |
| 7OQI | X-RAY DIFFRACTION | 1.15 |
| 3MI2 | X-RAY DIFFRACTION | 1.2 |
| 6ZWZ | X-RAY DIFFRACTION | 1.2 |
| 6ZX2 | X-RAY DIFFRACTION | 1.2 |
| 2QCF | X-RAY DIFFRACTION | 1.22 |
| 3EX4 | X-RAY DIFFRACTION | 1.24 |
| 6YVK | X-RAY DIFFRACTION | 1.25 |
| 6YVL | X-RAY DIFFRACTION | 1.25 |
| 6YVM | X-RAY DIFFRACTION | 1.25 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P11172-F1 | 92.36 | 0.84 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (3): 312 (for ompdecase activity); 314 (for ompdecase activity); 317 (for ompdecase activity)
Ligand- & substrate-binding residues (16): 259; 281–283; 281; 314; 317; 317; 321; 321; 372; 372; 430–432; 430–432 …
Post-translational modifications (3): 2, 37, 214
Mutagenesis-validated functional residues (1):
| Position | Phenotype |
|---|---|
| 312 | loss of ompdecase activity. |
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-500753 | Pyrimidine biosynthesis |
MSigDB gene sets: 322 (showing top):
GSE45365_NK_CELL_VS_CD8A_DC_MCMV_INFECTION_DN, MODULE_52, GOBP_NUCLEOSIDE_DIPHOSPHATE_METABOLIC_PROCESS, MODULE_56, CGGAARNGGCNG_UNKNOWN, GOBP_ORGANOPHOSPHATE_METABOLIC_PROCESS, GOBP_NUCLEOSIDE_PHOSPHATE_BIOSYNTHETIC_PROCESS, GOBP_ORGANOPHOSPHATE_BIOSYNTHETIC_PROCESS, GOBP_PYRIMIDINE_NUCLEOBASE_METABOLIC_PROCESS, GOBP_CARBOHYDRATE_DERIVATIVE_METABOLIC_PROCESS, GOBP_NUCLEOBASE_CONTAINING_SMALL_MOLECULE_METABOLIC_PROCESS, WEI_MYCN_TARGETS_WITH_E_BOX, KOKKINAKIS_METHIONINE_DEPRIVATION_96HR_UP, GOBP_PYRIMIDINE_NUCLEOTIDE_METABOLIC_PROCESS, MODULE_272
GO Biological Process (6): ‘de novo’ pyrimidine nucleobase biosynthetic process (GO:0006207), UMP biosynthetic process (GO:0006222), UDP biosynthetic process (GO:0006225), pyrimidine nucleobase biosynthetic process (GO:0019856), ‘de novo’ UMP biosynthetic process (GO:0044205), pyrimidine nucleotide biosynthetic process (GO:0006221)
GO Molecular Function (9): orotate phosphoribosyltransferase activity (GO:0004588), orotidine-5’-phosphate decarboxylase activity (GO:0004590), identical protein binding (GO:0042802), catalytic activity (GO:0003824), protein binding (GO:0005515), transferase activity (GO:0016740), glycosyltransferase activity (GO:0016757), lyase activity (GO:0016829), carboxy-lyase activity (GO:0016831)
GO Cellular Component (3): nucleus (GO:0005634), cytoplasm (GO:0005737), cytosol (GO:0005829)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Nucleotide biosynthesis | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| pyrimidine ribonucleotide biosynthetic process | 2 |
| pyrimidine-containing compound biosynthetic process | 2 |
| catalytic activity | 2 |
| cellular anatomical structure | 2 |
| pyrimidine nucleobase biosynthetic process | 1 |
| pyrimidine ribonucleoside monophosphate biosynthetic process | 1 |
| UMP metabolic process | 1 |
| pyrimidine ribonucleoside diphosphate biosynthetic process | 1 |
| UDP metabolic process | 1 |
| pyrimidine nucleobase metabolic process | 1 |
| nucleobase biosynthetic process | 1 |
| UMP biosynthetic process | 1 |
| pyrimidine nucleotide metabolic process | 1 |
| nucleotide biosynthetic process | 1 |
| pentosyltransferase activity | 1 |
| carboxy-lyase activity | 1 |
| protein binding | 1 |
| molecular_function | 1 |
| binding | 1 |
| transferase activity | 1 |
| carbon-carbon lyase activity | 1 |
| intracellular membrane-bounded organelle | 1 |
| intracellular anatomical structure | 1 |
| cytoplasm | 1 |
Protein interactions and networks
STRING
4539 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| UMPS | DHODH | Q02127 | 978 |
| UMPS | DPYD | Q12882 | 873 |
| UMPS | UPP2 | O95045 | 845 |
| UMPS | UPP1 | Q16831 | 837 |
| UMPS | TYMS | P04818 | 816 |
| UMPS | TYMP | P19971 | 815 |
| UMPS | UCK1 | Q9HA47 | 811 |
| UMPS | UCKL1 | Q9NWZ5 | 811 |
| UMPS | CAD | P27708 | 805 |
| UMPS | UCK2 | Q9BZX2 | 768 |
| UMPS | PRPS1L1 | P21108 | 763 |
| UMPS | F10 | P00742 | 761 |
| UMPS | PRPS1 | P09329 | 751 |
| UMPS | UPRT | Q96BW1 | 724 |
| UMPS | CTPS1 | P17812 | 721 |
IntAct
77 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| HRAS | RAF1 | psi-mi:“MI:0914”(association) | 0.980 |
| CFTR | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.710 |
| CFTR | ESYT2 | psi-mi:“MI:0914”(association) | 0.710 |
| SLC17A5 | LGALS8 | psi-mi:“MI:0914”(association) | 0.640 |
| UMPS | EPHA4 | psi-mi:“MI:0915”(physical association) | 0.560 |
| EPPIN | UMPS | psi-mi:“MI:0914”(association) | 0.530 |
| FAM174A | BLTP3B | psi-mi:“MI:0914”(association) | 0.530 |
| S100A4 | OIP5 | psi-mi:“MI:0914”(association) | 0.530 |
| DDX21 | MED19 | psi-mi:“MI:2364”(proximity) | 0.480 |
| TK2 | psi-mi:“MI:0915”(physical association) | 0.400 | |
| A2M | UMPS | psi-mi:“MI:0915”(physical association) | 0.370 |
| UMPS | NOS3 | psi-mi:“MI:0915”(physical association) | 0.370 |
| PAXIP1 | UMPS | psi-mi:“MI:0915”(physical association) | 0.370 |
| PSEN1 | UMPS | psi-mi:“MI:0915”(physical association) | 0.370 |
| UMPS | CALU | psi-mi:“MI:0915”(physical association) | 0.370 |
| UMPS | ZNF227 | psi-mi:“MI:0915”(physical association) | 0.370 |
| PLA2G12A | UMPS | psi-mi:“MI:0915”(physical association) | 0.370 |
| UMPS | RPS29 | psi-mi:“MI:0915”(physical association) | 0.370 |
| CASP8 | UMPS | psi-mi:“MI:0915”(physical association) | 0.370 |
| PIK3CA | UMPS | psi-mi:“MI:0915”(physical association) | 0.370 |
| UMPS | RAD51 | psi-mi:“MI:0915”(physical association) | 0.370 |
| UMPS | RB1CC1 | psi-mi:“MI:0915”(physical association) | 0.370 |
| Nup98 | POM121C | psi-mi:“MI:0914”(association) | 0.350 |
| Kif4 | UMPS | psi-mi:“MI:0914”(association) | 0.350 |
| KLC4 | PUF60 | psi-mi:“MI:0914”(association) | 0.350 |
| MYH6 | ELOC | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (144): UMPS (Affinity Capture-RNA), UMPS (Affinity Capture-RNA), UMPS (Affinity Capture-MS), AASDHPPT (Co-fractionation), ALDH16A1 (Co-fractionation), ALDH5A1 (Co-fractionation), APRT (Co-fractionation), DUT (Co-fractionation), GBE1 (Co-fractionation), GLO1 (Co-fractionation), GNPDA1 (Co-fractionation), GNPDA2 (Co-fractionation), HMBS (Co-fractionation), ITPA (Co-fractionation), PGAM1 (Co-fractionation)
ESM2 similar proteins: A0A1J6KGJ9, A0A314KSQ4, A2RU49, A4IF87, A5PJU6, B4G0F3, B8BKI7, B9SQI7, C6JS30, E0CSI1, E0CTF3, G1SPE9, O08848, O15228, O22190, O23732, O43929, O82333, O88708, P11172, P31531, P37821, P42700, P46416, Q05B63, Q10D00, Q28DB5, Q2R483, Q2YDI2, Q3T067, Q3U1V6, Q4U3P8, Q5R514, Q5R6Z7, Q5R962, Q6GM82, Q6I581, Q6YJI5, Q7TNK6, Q7Z4G4
Diamond homologs: A0RY85, A1RRV2, A1SPW6, A2BJ25, A2CCL7, A2SQ87, A3CU84, A3DM49, A3MX27, A4QHG9, A4WLH7, A4YL97, A5EST0, A6KYP1, A6SUD4, A6U5N7, A8LRS7, A9VTC2, B0SCV6, B0SL24, B7IUP2, B7JJW9, B9JQW1, C3L744, C3MF81, C3P652, C5A1Y3, C6BW21, D4GZW2, G5EDZ2, O08359, O27888, O28533, O58855, O61790, O67742, P09556, P0CL78, P0CL79, P11172
SIGNOR signaling
7 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| UMPS | “down-regulates quantity” | “orotic acid” | “chemical modification” |
| UMPS | “down-regulates quantity” | “orotidine 5’-phosphate(3-)” | “chemical modification” |
| UMPS | “down-regulates quantity” | orotate | “chemical modification” |
| UMPS | “down-regulates quantity” | “5-phospho-α-D-ribose 1-diphosphate” | “chemical modification” |
| UMPS | “up-regulates quantity” | “orotidine 5’-phosphate(3-)” | “chemical modification” |
| UMPS | “up-regulates quantity” | UMP | “chemical modification” |
| UMPS | up-regulates | Pyrimidine_nucleotide_metabolic_process |
Disease & clinical
Clinical variants and AI predictions
ClinVar
293 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 3 |
| Likely pathogenic | 2 |
| Uncertain significance | 166 |
| Likely benign | 44 |
| Benign | 53 |
Top pathogenic / likely-pathogenic (5)
| Variant ID | HGVS | Classification |
|---|---|---|
| 11907 | NM_000373.4(UMPS):c.326T>G (p.Val109Gly) | Pathogenic |
| 3233632 | NM_000373.4(UMPS):c.188del (p.Asn63fs) | Pathogenic |
| 620432 | NM_000373.4(UMPS):c.670G>T (p.Glu224Ter) | Pathogenic |
| 523038 | NM_000373.4(UMPS):c.1123G>A (p.Gly375Ser) | Likely pathogenic |
| 810716 | NM_000373.4(UMPS):c.870dup (p.Thr291fs) | Likely pathogenic |
SpliceAI
1132 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 3:124735227:G:GT | donor_gain | 1.0000 |
| 3:124735228:A:T | donor_gain | 1.0000 |
| 3:124735240:GAT:G | donor_gain | 1.0000 |
| 3:124735258:G:GG | donor_gain | 1.0000 |
| 3:124737562:TTCTA:T | acceptor_loss | 1.0000 |
| 3:124737563:TCTA:T | acceptor_loss | 1.0000 |
| 3:124737564:CTA:C | acceptor_loss | 1.0000 |
| 3:124737565:TAGG:T | acceptor_loss | 1.0000 |
| 3:124737566:A:AC | acceptor_loss | 1.0000 |
| 3:124737566:A:AG | acceptor_gain | 1.0000 |
| 3:124737567:G:GG | acceptor_gain | 1.0000 |
| 3:124740020:TTA:T | acceptor_loss | 1.0000 |
| 3:124740021:TA:T | acceptor_loss | 1.0000 |
| 3:124740022:A:AC | acceptor_loss | 1.0000 |
| 3:124740023:G:GT | acceptor_loss | 1.0000 |
| 3:124740197:GCG:G | donor_gain | 1.0000 |
| 3:124740197:GCGGT:G | donor_loss | 1.0000 |
| 3:124740199:GGTA:G | donor_loss | 1.0000 |
| 3:124740200:G:GA | donor_loss | 1.0000 |
| 3:124740200:G:GG | donor_gain | 1.0000 |
| 3:124740201:T:A | donor_loss | 1.0000 |
| 3:124744055:G:GT | donor_gain | 1.0000 |
| 3:124744055:G:T | donor_gain | 1.0000 |
| 3:124730623:G:GG | donor_gain | 0.9900 |
| 3:124730623:GTCAG:G | donor_loss | 0.9900 |
| 3:124730624:TCAG:T | donor_loss | 0.9900 |
| 3:124730625:CAGG:C | donor_loss | 0.9900 |
| 3:124730627:GGTGC:G | donor_loss | 0.9900 |
| 3:124730629:T:G | donor_loss | 0.9900 |
| 3:124730640:G:GT | donor_gain | 0.9900 |
AlphaMissense
3115 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 3:124735227:G:C | R97S | 0.992 |
| 3:124735227:G:T | R97S | 0.992 |
| 3:124735226:G:C | R97T | 0.991 |
| 3:124738195:G:C | R313P | 0.990 |
| 3:124738192:A:C | D312A | 0.989 |
| 3:124735226:G:T | R97M | 0.988 |
| 3:124737627:G:C | D124H | 0.987 |
| 3:124738192:A:T | D312V | 0.987 |
| 3:124738193:C:A | D312E | 0.986 |
| 3:124738193:C:G | D312E | 0.986 |
| 3:124740155:A:C | S372R | 0.986 |
| 3:124740157:C:A | S372R | 0.986 |
| 3:124740157:C:G | S372R | 0.986 |
| 3:124738191:G:C | D312H | 0.985 |
| 3:124737628:A:C | D124A | 0.984 |
| 3:124737648:A:C | S131R | 0.983 |
| 3:124737650:T:A | S131R | 0.983 |
| 3:124737650:T:G | S131R | 0.983 |
| 3:124738100:G:C | K281N | 0.983 |
| 3:124738100:G:T | K281N | 0.983 |
| 3:124737629:T:A | D124E | 0.982 |
| 3:124737629:T:G | D124E | 0.982 |
| 3:124740047:T:A | W336R | 0.981 |
| 3:124740047:T:C | W336R | 0.981 |
| 3:124740147:C:A | A369E | 0.981 |
| 3:124735169:C:A | A78D | 0.980 |
| 3:124735181:C:A | A82D | 0.979 |
| 3:124738020:T:C | C255R | 0.979 |
| 3:124740134:T:C | C365R | 0.979 |
| 3:124742189:G:A | G399D | 0.979 |
dbSNP variants (sampled 300 via entrez): RS1000036185 (3:124732429 G>A,T), RS1000051300 (3:124735891 C>G,T), RS1000103349 (3:124736421 A>G), RS1000219177 (3:124748604 C>A,G,T), RS1000392371 (3:124730003 T>C), RS1000462391 (3:124745508 C>A), RS1000535212 (3:124744312 C>T), RS1000600087 (3:124745776 C>G,T), RS1001157148 (3:124731980 T>G), RS1001354922 (3:124738421 T>C), RS1001663653 (3:124728620 C>T), RS1001726209 (3:124734037 A>G), RS1001778418 (3:124734438 T>C), RS1001878572 (3:124738678 A>G), RS1001965594 (3:124743603 A>T)
Disease associations
OMIM: gene MIM:613891 | disease phenotypes: MIM:258900
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| orotic aciduria | Definitive | Autosomal recessive |
Mondo (2): orotic aciduria (MONDO:0009797), cardiomyopathy (MONDO:0004994)
Orphanet (2): Hereditary orotic aciduria (Orphanet:30), Rare cardiomyopathy (Orphanet:167848)
HPO phenotypes
27 total (27 of 27 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000069 | Abnormality of the ureter |
| HP:0000316 | Hypertelorism |
| HP:0000358 | Posteriorly rotated ears |
| HP:0000431 | Wide nasal bridge |
| HP:0000494 | Downslanted palpebral fissures |
| HP:0000790 | Hematuria |
| HP:0001263 | Global developmental delay |
| HP:0001385 | Hip dysplasia |
| HP:0001508 | Failure to thrive |
| HP:0001629 | Ventricular septal defect |
| HP:0001631 | Atrial septal defect |
| HP:0001643 | Patent ductus arteriosus |
| HP:0001744 | Splenomegaly |
| HP:0001903 | Anemia |
| HP:0002205 | Recurrent respiratory infections |
| HP:0003218 | Oroticaciduria |
| HP:0003267 | Reduced orotidine 5-prime phosphate decarboxylase level |
| HP:0003339 | Pyrimidine-responsive megaloblastic anemia |
| HP:0003355 | Aminoaciduria |
| HP:0003526 | Orotic acid crystalluria |
| HP:0004447 | Poikilocytosis |
| HP:0004826 | Folate-unresponsive megaloblastic anemia |
| HP:0008388 | Abnormal toenail morphology |
| HP:0011273 | Anisocytosis |
| HP:0011840 | Abnormal T cell physiology |
| HP:0032231 | Hypochromia |
GWAS associations
10 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST004787_30 | Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease) | 2.000000e-09 |
| GCST005194_107 | Coronary artery disease | 2.000000e-13 |
| GCST005195_46 | Coronary artery disease | 1.000000e-14 |
| GCST005196_108 | Coronary artery disease | 2.000000e-13 |
| GCST007990_6 | Coronary artery disease | 2.000000e-08 |
| GCST010566_2 | Benign childhood epilepsy with centro-temporal spikes | 2.000000e-06 |
| GCST010866_9 | Coronary artery disease | 4.000000e-13 |
| GCST012020_96 | Serum metabolite levels | 6.000000e-123 |
| GCST012020_97 | Serum metabolite levels | 9.000000e-163 |
| GCST90002400_396 | Plateletcrit | 1.000000e-31 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0007985 | platelet crit |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D009202 | Cardiomyopathies | C14.280.238 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL5216 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
1 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 11,438 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL2105330 | PYRAZOFURIN | 2 | 11,438 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB clinical annotations
6 annotations.
| Variant | Type | Level | Drugs | Phenotypes |
|---|---|---|---|---|
| rs1801019 | Toxicity | 3 | tegafur | Drug Toxicity |
| rs2279199 | Toxicity | 3 | capecitabine | Nausea;Vomiting |
| rs2291078 | Efficacy | 3 | capecitabine;fluorouracil | Metastatic neoplasm |
| rs3772809 | Efficacy | 3 | capecitabine;fluorouracil | Metastatic neoplasm |
| rs3772810 | Efficacy | 3 | capecitabine;fluorouracil | Metastatic neoplasm |
| rs4678145 | Toxicity | 3 | capecitabine | Asthenia;Neoplasms |
PharmGKB variants
7 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs1801019 | UMPS | 3 | 5.00 | 1 | tegafur |
| rs2291078 | UMPS | 3 | 0.00 | 1 | capecitabine;fluorouracil |
| rs3772809 | UMPS | 3 | 0.00 | 1 | capecitabine;fluorouracil |
| rs3772810 | UMPS | 3 | 0.00 | 1 | capecitabine;fluorouracil |
| rs10049380 | ITGB5, UMPS | 0.00 | 0 | ||
| rs2279199 | UMPS | 3 | 2.75 | 1 | capecitabine |
| rs4678145 | MIR544B, UMPS | 3 | 3.25 | 1 | capecitabine |
ChEMBL bioactivities
6 potent at pChembl≥5 of 10 total, top 6 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 7.77 | Ki | 17 | nM | PYRAZOFURIN |
| 7.77 | Ki | 17 | nM | CHEMBL1164953 |
| 7.10 | Kd | 79.06 | nM | CHEMBL5653589 |
| 7.10 | ED50 | 79.06 | nM | CHEMBL5653589 |
| 6.46 | Ki | 350 | nM | CHEMBL473587 |
| 5.96 | Ki | 1100 | nM | CHEMBL474164 |
PubChem BioAssay actives
26 with measured affinity, of 51 total; 25 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 3-[(2S,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-4-hydroxy-1H-pyrazole-5-carboxamide | 1388714: Inhibition of human ODCase | ki | 0.0170 | uM |
| [(2R,3S,4R,5S)-5-(5-carbamoyl-4-hydroxy-1H-pyrazol-3-yl)-3,4-dihydroxyoxolan-2-yl]methyl dihydrogen phosphate | 488222: Inhibition of human uridine 5’-monophosphate synthase after overnight incubation at room temperature by UV spectroscopy | ki | 0.0170 | uM |
| [(2R,5S)-3,4-dihydroxy-5-(4-nitrophenoxy)oxolan-2-yl]methyl dihydrogen phosphate | 1802454: Inhibition Assay from Article 10.1074/jbc.M113.521955: “Transition state analogues of Plasmodium falciparum and human orotate phosphoribosyltransferases.” | ki | 0.0410 | uM |
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2149731: Binding affinity to human UMPS incubated for 45 mins by Kinobead based pull down assay | kd | 0.0791 | uM |
| 5-bromo-1-[2-[(2R)-3,4-dihydroxy-2-(hydroxymethyl)pyrrolidin-1-ium-1-yl]ethyl]-1,3-diazinane-2,4-dione | 1802454: Inhibition Assay from Article 10.1074/jbc.M113.521955: “Transition state analogues of Plasmodium falciparum and human orotate phosphoribosyltransferases.” | ki | 0.0800 | uM |
| 5-[[(4R)-3-hydroxy-4-(hydroxymethyl)pyrrolidin-1-ium-1-yl]methyl]-2,6-dioxo-1,3-diazinane-4-carboxylic acid | 1802454: Inhibition Assay from Article 10.1074/jbc.M113.521955: “Transition state analogues of Plasmodium falciparum and human orotate phosphoribosyltransferases.” | ki | 0.0830 | uM |
| [(3S,6R)-4,5-dihydroxy-8,11,13-trioxo-1,7,12-triazatricyclo[7.4.0.03,7]tridecan-6-yl]methyl dihydrogen phosphate | 1802454: Inhibition Assay from Article 10.1074/jbc.M113.521955: “Transition state analogues of Plasmodium falciparum and human orotate phosphoribosyltransferases.” | ki | 0.0900 | uM |
| (3S,6R)-4,5-dihydroxy-6-(hydroxymethyl)-1,7,12-triazatricyclo[7.4.0.03,7]tridecane-8,11,13-trione | 1802454: Inhibition Assay from Article 10.1074/jbc.M113.521955: “Transition state analogues of Plasmodium falciparum and human orotate phosphoribosyltransferases.” | ki | 0.1100 | uM |
| (2R,5S)-2-(hydroxymethyl)-5-(4-nitrophenoxy)oxolane-3,4-diol | 1802454: Inhibition Assay from Article 10.1074/jbc.M113.521955: “Transition state analogues of Plasmodium falciparum and human orotate phosphoribosyltransferases.” | ki | 0.1200 | uM |
| 1,3-dihydroxypropan-2-yl-[2-(4-nitrophenyl)ethyl]azanium | 1802454: Inhibition Assay from Article 10.1074/jbc.M113.521955: “Transition state analogues of Plasmodium falciparum and human orotate phosphoribosyltransferases.” | ki | 0.1200 | uM |
| [(2R,5S)-5-[(6-cyano-2,4-dioxo-1,3-diazinan-1-yl)methyl]-3,4-dihydroxypyrrolidin-1-ium-2-yl]methyl dihydrogen phosphate | 1802454: Inhibition Assay from Article 10.1074/jbc.M113.521955: “Transition state analogues of Plasmodium falciparum and human orotate phosphoribosyltransferases.” | ki | 0.1400 | uM |
| 1,3-dihydroxypropan-2-yl-[(4-nitrophenyl)methyl]azanium | 1802454: Inhibition Assay from Article 10.1074/jbc.M113.521955: “Transition state analogues of Plasmodium falciparum and human orotate phosphoribosyltransferases.” | ki | 0.1500 | uM |
| [(2R,5S)-5-[(5-bromo-2,4-dioxo-1,3-diazinan-1-yl)methyl]-3,4-dihydroxypyrrolidin-1-ium-2-yl]methyl dihydrogen phosphate | 1802454: Inhibition Assay from Article 10.1074/jbc.M113.521955: “Transition state analogues of Plasmodium falciparum and human orotate phosphoribosyltransferases.” | ki | 0.2000 | uM |
| (4R)-4-(hydroxymethyl)-1-[(4-nitrophenyl)methyl]pyrrolidin-1-ium-3-ol | 1802454: Inhibition Assay from Article 10.1074/jbc.M113.521955: “Transition state analogues of Plasmodium falciparum and human orotate phosphoribosyltransferases.” | ki | 0.2000 | uM |
| (2R,5S)-2-(hydroxymethyl)-5-(4-nitrophenyl)pyrrolidin-1-ium-3,4-diol | 1802454: Inhibition Assay from Article 10.1074/jbc.M113.521955: “Transition state analogues of Plasmodium falciparum and human orotate phosphoribosyltransferases.” | ki | 0.2300 | uM |
| (4R)-4-(hydroxymethyl)-1-[2-(4-nitrophenyl)ethyl]pyrrolidin-1-ium-3-ol | 1802454: Inhibition Assay from Article 10.1074/jbc.M113.521955: “Transition state analogues of Plasmodium falciparum and human orotate phosphoribosyltransferases.” | ki | 0.2300 | uM |
| 5-[[(4R)-3-hydroxy-4-(phosphonooxymethyl)pyrrolidin-1-ium-1-yl]methyl]-2,6-dioxo-1,3-diazinane-4-carboxylic acid | 1802454: Inhibition Assay from Article 10.1074/jbc.M113.521955: “Transition state analogues of Plasmodium falciparum and human orotate phosphoribosyltransferases.” | ki | 0.2400 | uM |
| 2,6-dioxo-5-(pyrrolidin-1-ium-1-ylmethyl)-1,3-diazinane-4-carboxylic acid | 1802454: Inhibition Assay from Article 10.1074/jbc.M113.521955: “Transition state analogues of Plasmodium falciparum and human orotate phosphoribosyltransferases.” | ki | 0.2500 | uM |
| 3-[2-[(2R)-3,4-dihydroxy-2-(hydroxymethyl)pyrrolidin-1-ium-1-yl]ethyl]-2,6-dioxo-1,3-diazinane-4-carboxylic acid | 1802454: Inhibition Assay from Article 10.1074/jbc.M113.521955: “Transition state analogues of Plasmodium falciparum and human orotate phosphoribosyltransferases.” | ki | 0.2900 | uM |
| [(2R,3S,4R,5R)-5-(6-ethyl-5-fluoro-2,4-dioxopyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methyl dihydrogen phosphate | 1798852: Enzyme Inhibition Assay from Article 10.1021/jm801224t: “Structure-activity relationships of orotidine-5’-monophosphate decarboxylase inhibitors as anticancer agents.” | ki | 0.3500 | uM |
| 3-[[(2S,5R)-3,4-dihydroxy-5-(hydroxymethyl)pyrrolidin-1-ium-2-yl]methyl]-2,6-dioxo-1,3-diazinane-4-carbonitrile | 1802454: Inhibition Assay from Article 10.1074/jbc.M113.521955: “Transition state analogues of Plasmodium falciparum and human orotate phosphoribosyltransferases.” | ki | 0.3600 | uM |
| 5-bromo-1-[2-[(4R)-3-hydroxy-4-(hydroxymethyl)pyrrolidin-1-ium-1-yl]ethyl]-1,3-diazinane-2,4-dione | 1802454: Inhibition Assay from Article 10.1074/jbc.M113.521955: “Transition state analogues of Plasmodium falciparum and human orotate phosphoribosyltransferases.” | ki | 0.5200 | uM |
| 5-bromo-1-[[(2S,5R)-3,4-dihydroxy-5-(hydroxymethyl)pyrrolidin-1-ium-2-yl]methyl]-1,3-diazinane-2,4-dione | 1802454: Inhibition Assay from Article 10.1074/jbc.M113.521955: “Transition state analogues of Plasmodium falciparum and human orotate phosphoribosyltransferases.” | ki | 0.5300 | uM |
| [(2R,3S,4R,5R)-5-(5-fluoro-6-iodo-2,4-dioxopyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methyl dihydrogen phosphate | 393540: Irreversible inhibition of human ODCase | ki | 1.1000 | uM |
| 3-[(2S,5R)-3,4-dihydroxy-5-(phosphonooxymethyl)pyrrolidin-1-ium-2-yl]pyridine-4-carboxylic acid | 1802454: Inhibition Assay from Article 10.1074/jbc.M113.521955: “Transition state analogues of Plasmodium falciparum and human orotate phosphoribosyltransferases.” | ki | 4.3000 | uM |
CTD chemical–gene interactions
62 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Fluorouracil | decreases reaction, increases reaction, increases response to substance, affects response to substance, decreases response to substance (+3 more) | 12 |
| bisphenol A | decreases expression | 4 |
| sodium arsenite | decreases expression, affects cotreatment, increases abundance, increases expression | 3 |
| cobaltous chloride | decreases expression | 2 |
| Arsenic | affects methylation, affects cotreatment, increases abundance, increases expression | 2 |
| Plant Extracts | affects cotreatment, increases expression, decreases expression | 2 |
| Valproic Acid | affects expression, decreases expression | 2 |
| aristolochic acid I | increases expression | 1 |
| GSK-J4 | decreases expression | 1 |
| FR900359 | decreases phosphorylation | 1 |
| bisphenol F | increases expression | 1 |
| dicrotophos | decreases expression | 1 |
| 2,4,6-tribromophenol | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| sodium arsenate | decreases expression | 1 |
| decabromobiphenyl ether | decreases expression | 1 |
| arsenite | affects binding, increases reaction | 1 |
| afimoxifene | decreases reaction, increases expression | 1 |
| nickel chloride | decreases expression | 1 |
| perfluorooctanoic acid | increases expression | 1 |
| manganese chloride | affects cotreatment, increases abundance, increases expression | 1 |
| gambogic acid | increases expression, increases reaction | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| wogonin | decreases expression, decreases reaction | 1 |
| cylindrospermopsin | increases expression | 1 |
| azaribine | increases activity | 1 |
| K 7174 | decreases expression | 1 |
| bisphenol B | increases expression | 1 |
| pentabrominated diphenyl ether 100 | increases expression | 1 |
| NSC 689534 | decreases expression, affects binding | 1 |
ChEMBL screening assays
14 unique, capped per target: 14 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1010812 | Binding | Irreversible inhibition of human ODCase | Structure-activity relationships of orotidine-5’-monophosphate decarboxylase inhibitors as anticancer agents. — J Med Chem |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00348530 | PHASE4 | UNKNOWN | Carvedilol Versus Verapamil in Chronic Heart Failure Secondary to Non-Ischemic Cardiomyopathy |
| NCT00371891 | PHASE4 | COMPLETED | Ontario Multidetector Computed Tomographic (MDCT) Coronary Angiography Study (OMCAS) |
| NCT00401856 | PHASE4 | COMPLETED | CMR to Assess Fibrosis in Cardiomyopathy Using Eplerenone |
| NCT00559338 | PHASE4 | COMPLETED | Impact of Nesiritide Infusion for Decompensated Heart Failure in the Emergency Department |
| NCT00606775 | PHASE4 | UNKNOWN | The Preventive Efficacy of Carvedilol on Cardiac Dysfunction in Duchenne Muscular Dystrophy |
| NCT00658203 | PHASE4 | COMPLETED | Clinical Evaluation on Advanced Resynchronization |
| NCT00701220 | PHASE4 | COMPLETED | Statin Therapy for Ischemic and Nonischemic Cardiomyopathy |
| NCT00800761 | PHASE4 | COMPLETED | Intensive Combined Chelation Therapy for Iron-Induced Cardiac Disease in Patients With Thalassemia Major |
| NCT00806390 | PHASE4 | TERMINATED | Prevention of Anthracycline or Trastuzumab Induced Cardiomyopathy by Metoprolol |
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| NCT01868841 | PHASE4 | COMPLETED | 123-I mIBG (AdreView) Heart-to-Mediastinal (H/M) Ratio and SPECT Imaging on a Small Field of View-High Efficiency Cardiac SPECT System |
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| NCT05034432 | PHASE4 | RECRUITING | The PIVATAL Study -Study of Ventricular Arrhythmia (VTA) Ablation in Left Ventricular Assist Device (LVAD) Patients |
| NCT05718128 | PHASE4 | RECRUITING | Clinical Study of Endocardial Myocardial Biopsy |
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| NCT00321295 | PHASE3 | COMPLETED | Biventricular Pacing In Patients With Left Ventricular Dysfunction After Cardiovascular Surgery |
| NCT00483197 | PHASE3 | UNKNOWN | VentrAssistTM LVAD as a Bridge to Cardiac Transplantation - Pivotal Trial |
| NCT00490321 | PHASE3 | UNKNOWN | VentrAssistTM LVAD for the Treatment of Advanced Heart Failure - Destination Therapy |
| NCT00626028 | PHASE3 | COMPLETED | Comparison of Inhaled Nitric Oxide and Oxygen in Participants Reactivity During Acute Pulmonary Vasodilator Testing |
| NCT01013714 | PHASE3 | UNKNOWN | Cardiac Sympathetic Denervation for Prevention of Ventricular Tachyarrhythmias |
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| NCT03860935 | PHASE3 | COMPLETED | Efficacy and Safety of AG10 in Subjects With Transthyretin Amyloid Cardiomyopathy |
| NCT04166331 | PHASE3 | COMPLETED | Adjunctive DobutAmine in sePtic Cardiomyopathy With Tissue Hypoperfusion |
| NCT05175066 | PHASE3 | COMPLETED | Bisoprolol Administration to Prevent Anthracycline-induced Cardiotoxicity |
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| NCT00185250 | PHASE2 | COMPLETED | Betaferon/ Betaseron (Interferon Beta-1b) in Patients With Chronic Viral Cardiomyopathy |
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Related Atlas pages
- Associated diseases: orotic aciduria
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): cardiomyopathy, coronary artery disorder, orotic aciduria