UQCC2
geneOn this page
Also known as MGC14833bA6B20.2M19Cbp6
Summary
UQCC2 (ubiquinol-cytochrome c reductase complex assembly factor 2, HGNC:21237) is a protein-coding gene on chromosome 6p21.31, encoding Ubiquinol-cytochrome c reductase complex assembly factor 2 (Q9BRT2). Required for the assembly of the ubiquinol-cytochrome c reductase complex (mitochondrial respiratory chain complex III or cytochrome b-c1 complex). It is a selective cancer dependency (DepMap: 15.1% of cell lines).
This gene encodes a nucleoid protein localized to the mitochondria inner membrane. The encoded protein affects regulation of insulin secretion, mitochondrial ATP production, and myogenesis through modulation of mitochondrial respiratory chain activity.
Source: NCBI Gene 84300 — RefSeq curated summary.
At a glance
- Gene–disease (curated): mitochondrial complex III deficiency nuclear type 7 (Strong, GenCC) — +2 more curated relationships
- GWAS associations: 6
- Clinical variants (ClinVar): 84 total — 2 pathogenic
- Phenotypes (HPO): 32
- Cancer dependency (DepMap): dependent in 15.1% of screened cell lines
- MANE Select transcript:
NM_032340
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:21237 |
| Approved symbol | UQCC2 |
| Name | ubiquinol-cytochrome c reductase complex assembly factor 2 |
| Location | 6p21.31 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | MGC14833, bA6B20.2, M19, Cbp6 |
| Ensembl gene | ENSG00000137288 |
| Ensembl biotype | protein_coding |
| OMIM | 614461 |
| Entrez | 84300 |
Gene structure
Transcript identifiers
Ensembl transcripts: 12 — 11 protein_coding, 1 retained_intron
ENST00000374214, ENST00000374231, ENST00000606961, ENST00000607484, ENST00000887985, ENST00000887986, ENST00000931722, ENST00000931723, ENST00000931724, ENST00000931725, ENST00000966148, ENST00000966149
RefSeq mRNA: 1 — MANE Select: NM_032340
NM_032340
CCDS: CCDS4784
Canonical transcript exons
ENST00000607484 — 4 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000738899 | 33701346 | 33701420 |
| ENSE00000738900 | 33700444 | 33700513 |
| ENSE00003698678 | 33696764 | 33697750 |
| ENSE00003842671 | 33711549 | 33711700 |
Expression profiles
Bgee: expression breadth ubiquitous, 251 present calls, max score 98.89.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 52.0113 / max 294.9639, expressed in 1819 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 73179 | 51.3361 | 1818 |
| 73178 | 0.6752 | 351 |
Top tissues by expression
254 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| apex of heart | UBERON:0002098 | 98.89 | gold quality |
| right atrium auricular region | UBERON:0006631 | 98.33 | gold quality |
| heart left ventricle | UBERON:0002084 | 98.28 | gold quality |
| cardiac ventricle | UBERON:0002082 | 98.22 | gold quality |
| cardiac atrium | UBERON:0002081 | 98.13 | gold quality |
| right testis | UBERON:0004534 | 97.84 | gold quality |
| left testis | UBERON:0004533 | 97.81 | gold quality |
| heart | UBERON:0000948 | 97.52 | gold quality |
| left ventricle myocardium | UBERON:0006566 | 97.48 | gold quality |
| gastrocnemius | UBERON:0001388 | 97.42 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 97.32 | gold quality |
| muscle of leg | UBERON:0001383 | 97.00 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 96.84 | gold quality |
| adenohypophysis | UBERON:0002196 | 96.83 | gold quality |
| myocardium | UBERON:0002349 | 96.80 | gold quality |
| islet of Langerhans | UBERON:0000006 | 96.71 | gold quality |
| heart right ventricle | UBERON:0002080 | 96.63 | gold quality |
| tibialis anterior | UBERON:0001385 | 96.53 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 96.51 | gold quality |
| testis | UBERON:0000473 | 96.43 | gold quality |
| pituitary gland | UBERON:0000007 | 96.38 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 96.31 | gold quality |
| cardiac muscle of right atrium | UBERON:0003379 | 96.16 | gold quality |
| biceps brachii | UBERON:0001507 | 96.10 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 96.08 | gold quality |
| hypothalamus | UBERON:0001898 | 95.98 | gold quality |
| nucleus accumbens | UBERON:0001882 | 95.97 | gold quality |
| right adrenal gland | UBERON:0001233 | 95.89 | gold quality |
| prefrontal cortex | UBERON:0000451 | 95.79 | gold quality |
| left adrenal gland | UBERON:0001234 | 95.78 | gold quality |
Single-cell (SCXA)
Detected in 7 experiment(s), a significant marker in 5.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-111727 | yes | 207.02 |
| E-MTAB-9543 | yes | 26.72 |
| E-MTAB-7316 | yes | 21.95 |
| E-GEOD-125970 | yes | 21.48 |
| E-ANND-3 | yes | 14.77 |
| E-MTAB-7606 | no | 229.31 |
| E-CURD-11 | no | 222.56 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
44 targeting UQCC2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3162-3P | 100.00 | 65.37 | 363 |
| HSA-MIR-6793-5P | 99.97 | 65.95 | 758 |
| HSA-MIR-3529-3P | 99.90 | 73.55 | 3045 |
| HSA-MIR-30A-3P | 99.87 | 69.74 | 2928 |
| HSA-MIR-30D-3P | 99.87 | 69.92 | 2917 |
| HSA-MIR-30E-3P | 99.87 | 69.68 | 2942 |
| HSA-MIR-6739-5P | 99.80 | 67.87 | 2806 |
| HSA-MIR-4319 | 99.76 | 69.83 | 2586 |
| HSA-MIR-6733-5P | 99.74 | 67.94 | 2759 |
| HSA-MIR-6505-5P | 99.73 | 69.25 | 1595 |
| HSA-MIR-3059-5P | 99.70 | 69.93 | 2491 |
| HSA-MIR-586 | 99.65 | 70.40 | 2051 |
| HSA-MIR-4328 | 99.57 | 71.06 | 4094 |
| HSA-MIR-3153 | 99.55 | 67.59 | 2337 |
| HSA-MIR-486-3P | 99.51 | 66.82 | 1901 |
| HSA-MIR-525-5P | 99.35 | 66.85 | 1615 |
| HSA-MIR-520A-5P | 99.35 | 66.72 | 1632 |
| HSA-MIR-7158-5P | 99.25 | 67.95 | 796 |
| HSA-MIR-544B | 99.18 | 67.41 | 1632 |
| HSA-MIR-1228-3P | 99.00 | 66.53 | 857 |
| HSA-MIR-320A-5P | 98.88 | 66.75 | 1248 |
| HSA-MIR-491-3P | 98.88 | 68.86 | 1224 |
| HSA-MIR-5006-5P | 98.79 | 66.92 | 1246 |
| HSA-MIR-6840-3P | 98.68 | 65.95 | 1923 |
| HSA-MIR-6868-3P | 98.63 | 69.64 | 2259 |
| HSA-MIR-6827-5P | 98.46 | 64.88 | 1256 |
| HSA-MIR-3187-5P | 98.36 | 65.74 | 1776 |
| HSA-MIR-3921 | 97.81 | 67.45 | 1431 |
| HSA-MIR-204-3P | 97.80 | 66.84 | 1656 |
| HSA-MIR-7111-3P | 97.80 | 66.75 | 1467 |
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 15.1% of screened cell lines.
Literature-anchored findings (GeneRIF, showing 5)
- M19 associates with the nucleoid and likely regulates the organization and metabolism of mtDNA. (PMID:19643811)
- Strong candidate gene for mitochondrial disease, based on recessive mutations detected in infantile patients (PMID:22277967)
- The function of M19, a novel mitochondrial nucleoid protein, is characterized in muscle and pancreatic beta-cells. (PMID:22363741)
- This work provides insight into human complex III assembly by establishing that UQCC1 and UQCC2 are complex III assembly factors participating in cytochrome b biogenesis. (PMID:24385928)
- UQCC3 is reduced in cells depleted for the complex III assembly factors UQCC1 and UQCC2. Conversely, absence of UQCC3 in patient cells does not affect UQCC1 and UQCC2. (PMID:25008109)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | uqcc2 | ENSDARG00000011272 |
| mus_musculus | Uqcc2 | ENSMUSG00000024208 |
| rattus_norvegicus | Uqcc2 | ENSRNOG00000025909 |
| rattus_norvegicus | Uqcc1-ps1 | ENSRNOG00000028997 |
| caenorhabditis_elegans | WBGENE00044466 |
Protein
Protein identifiers
Ubiquinol-cytochrome c reductase complex assembly factor 2 — Q9BRT2 (reviewed: Q9BRT2)
Alternative names: Breast cancer-associated protein SGA-81M, Mitochondrial nucleoid factor 1, Mitochondrial protein M19
All UniProt accessions (3): Q9BRT2, Q5TAQ0, V5IRT4
UniProt curated annotations — full annotation on UniProt →
Function. Required for the assembly of the ubiquinol-cytochrome c reductase complex (mitochondrial respiratory chain complex III or cytochrome b-c1 complex). Plays a role in the modulation of respiratory chain activities such as oxygen consumption and ATP production and via its modulation of the respiratory chain activity can regulate skeletal muscle differentiation and insulin secretion by pancreatic beta-cells. Involved in cytochrome b translation and/or stability.
Subunit / interactions. Interacts with UQCC1. Forms a complex, named COMB/coordinator of mitochondrial CYTB biogenesis, composed of UQCC1, UQCC2, UQCC4, UQCC5 and UQCC6; stabilizes nascent cytochrome b/MT-CYB and promotes its membrane insertion. Forms a complex, named COMB/coordinator of mitochondrial CYTB biogenesis, composed of UQCC1, UQCC2, UQCC4, UQCC5 and UQCC6; stabilizes nascent cytochrome b/MT-CYB and promotes its membrane insertion. Forms a complex, named COMA, composed of UQCC1, UQCC2 and UQCC4; activates MT-CYB translation. Forms a complex, named COMC, composed of UQCC1, UQCC2; UQCC3 and UQCC4; mediates MT-CYB hemylation and association with the first nuclear-encoded CIII subunit UQCRQ.
Subcellular location. Mitochondrion matrix. Mitochondrion nucleoid. Mitochondrion. Mitochondrion intermembrane space. Mitochondrion inner membrane.
Tissue specificity. Pancreas, skeletal muscle, kidney, liver and heart.
Disease relevance. Mitochondrial complex III deficiency, nuclear type 7 (MC3DN7) [MIM:615824] A form of mitochondrial complex III deficiency, a disorder of the mitochondrial respiratory chain resulting in a highly variable phenotype depending on which tissues are affected. MC3DN7 is characterized by severe intrauterine growth retardation, neonatal lactic acidosis and renal tubular dysfunction. Additional clinical features include a dysmorphic facial appearance, delayed psychomotor development, autistic features, aggressive behavior, and mild sensorineural hearing loss. The disease is caused by variants affecting the gene represented in this entry.
RefSeq proteins (1): NP_115716* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR037698 | UQCC2 | Family |
Pfam: PF20180
UniProt features (2 total): transit peptide 1, chain 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9BRT2-F1 | 88.94 | 0.70 |
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-9865881 | Complex III assembly |
MSigDB gene sets: 223 (showing top):
HORIUCHI_WTAP_TARGETS_DN, GOBP_MUSCLE_TISSUE_DEVELOPMENT, GOBP_REGULATION_OF_SKELETAL_MUSCLE_CELL_DIFFERENTIATION, GOBP_INSULIN_SECRETION, STARK_PREFRONTAL_CORTEX_22Q11_DELETION_DN, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_DN, GOBP_MITOCHONDRIAL_RESPIRATORY_CHAIN_COMPLEX_ASSEMBLY, GOBP_MITOCHONDRIAL_TRANSLATION, GOBP_REGULATION_OF_HORMONE_LEVELS, GOBP_HORMONE_TRANSPORT, GOBP_CELL_CELL_SIGNALING, GOBP_CYTOCHROME_COMPLEX_ASSEMBLY, GOBP_TRANSLATION, GOBP_GENERATION_OF_PRECURSOR_METABOLITES_AND_ENERGY, GOBP_REGULATION_OF_OXIDATIVE_PHOSPHORYLATION
GO Biological Process (5): regulation of oxidative phosphorylation (GO:0002082), mitochondrial respiratory chain complex III assembly (GO:0034551), regulation of insulin secretion (GO:0050796), positive regulation of mitochondrial translation (GO:0070131), regulation of skeletal muscle cell differentiation (GO:2001014)
GO Molecular Function (1): protein binding (GO:0005515)
GO Cellular Component (7): mitochondrion (GO:0005739), mitochondrial inner membrane (GO:0005743), mitochondrial intermembrane space (GO:0005758), mitochondrial matrix (GO:0005759), nuclear body (GO:0016604), mitochondrial nucleoid (GO:0042645), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Respiratory electron transport | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| mitochondrion | 3 |
| intracellular membraneless organelle | 2 |
| oxidative phosphorylation | 1 |
| regulation of aerobic respiration | 1 |
| respiratory chain complex III assembly | 1 |
| mitochondrial respiratory chain complex assembly | 1 |
| insulin secretion | 1 |
| regulation of protein secretion | 1 |
| regulation of peptide hormone secretion | 1 |
| mitochondrial translation | 1 |
| positive regulation of translation | 1 |
| regulation of mitochondrial translation | 1 |
| skeletal muscle cell differentiation | 1 |
| regulation of cell differentiation | 1 |
| binding | 1 |
| cytoplasm | 1 |
| intracellular membrane-bounded organelle | 1 |
| organelle inner membrane | 1 |
| mitochondrial membrane | 1 |
| mitochondrial envelope | 1 |
| organelle envelope lumen | 1 |
| intracellular organelle lumen | 1 |
| nucleoplasm | 1 |
| mitochondrial matrix | 1 |
| nucleoid | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
866 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| UQCC2 | UQCC1 | Q9NVA1 | 823 |
| UQCC2 | MT-CYB | P00156 | 725 |
| UQCC2 | TTC19 | Q6DKK2 | 678 |
| UQCC2 | UQCC3 | Q6UW78 | 678 |
| UQCC2 | MFN1 | Q8IWA4 | 661 |
| UQCC2 | LYRM7 | Q5U5X0 | 621 |
| UQCC2 | MFN2 | O95140 | 603 |
| UQCC2 | BCS1L | Q9Y276 | 582 |
| UQCC2 | UQCRB | P14927 | 571 |
| UQCC2 | UQCRQ | O14949 | 506 |
| UQCC2 | NDUFAF2 | Q8N183 | 471 |
| UQCC2 | CLDN2 | P57739 | 471 |
| UQCC2 | NDUFAF1 | Q9Y375 | 447 |
| UQCC2 | MSS51 | Q4VC12 | 447 |
| UQCC2 | UQCR10 | Q9UDW1 | 447 |
IntAct
85 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CDR2 | KTN1 | psi-mi:“MI:0914”(association) | 0.730 |
| YARS2 | HSPD1 | psi-mi:“MI:0914”(association) | 0.710 |
| UQCC2 | UQCC1 | psi-mi:“MI:0915”(physical association) | 0.620 |
| EXOC8 | UQCC2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CDKN2D | UQCC2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| GNG13 | UQCC2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ZNF765 | UQCC2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| TXN2 | UQCC2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| UQCC2 | MRFAP1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| UQCC2 | NRDE2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SNAP25 | UQCC2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| TRAPPC2 | UQCC2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| MKRN3 | UQCC2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| UQCC2 | GNG13 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SLX1A | BACH1 | psi-mi:“MI:0914”(association) | 0.530 |
| TMEM185A | TSPAN6 | psi-mi:“MI:0914”(association) | 0.530 |
| TM2D2 | TMEM97 | psi-mi:“MI:0914”(association) | 0.530 |
| CXCR4 | TMEM120B | psi-mi:“MI:0914”(association) | 0.530 |
| GRB2 | UQCC2 | psi-mi:“MI:0915”(physical association) | 0.490 |
| UQCC2 | RABGAP1L | psi-mi:“MI:0915”(physical association) | 0.490 |
| RABGAP1L | UQCC2 | psi-mi:“MI:0915”(physical association) | 0.490 |
| UQCC2 | CEACAM5 | psi-mi:“MI:0915”(physical association) | 0.370 |
| UQCC2 | HSPB1 | psi-mi:“MI:0915”(physical association) | 0.370 |
BioGRID (65): UQCC2 (Affinity Capture-MS), UQCC2 (Affinity Capture-MS), UQCC2 (Affinity Capture-MS), UQCC2 (Two-hybrid), UQCC2 (Two-hybrid), UQCC2 (Two-hybrid), UQCC2 (Affinity Capture-MS), UQCC2 (Affinity Capture-MS), UQCC2 (Affinity Capture-MS), UQCC2 (Affinity Capture-MS), UQCC2 (Affinity Capture-MS), UQCC2 (Affinity Capture-MS), UQCC2 (Affinity Capture-MS), UQCC2 (Affinity Capture-MS), UQCC2 (Affinity Capture-MS)
ESM2 similar proteins: A0JPA6, A1C9A5, A5PLG0, B4F7A1, B5DFN3, P0CB99, P0CC00, P23935, P56556, P82933, Q02366, Q0MQA1, Q0MQA2, Q0MQA3, Q0MQA4, Q0MQA5, Q0P574, Q16718, Q2M2S9, Q3SZ13, Q3T040, Q4IN52, Q4QQY2, Q4R5J1, Q4SQJ2, Q4WHK3, Q58DV5, Q5AX36, Q5BBH7, Q5I0K8, Q5REC3, Q5SPH9, Q5U5X0, Q5ZMU0, Q63362, Q6DCS1, Q6DDY9, Q6PBU7, Q6TUF2, Q8BQU3
Diamond homologs: B0X4T2, B5DFN3, Q0VFC7, Q3SZ13, Q6PBU7, Q9BRT2, Q9CQY6
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
84 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 2 |
| Likely pathogenic | 0 |
| Uncertain significance | 39 |
| Likely benign | 27 |
| Benign | 12 |
Top pathogenic / likely-pathogenic (2)
| Variant ID | HGVS | Classification |
|---|---|---|
| 133295 | NM_032340.4(UQCC2):c.214-3C>G | Pathogenic |
| 2499488 | NM_032340.4(UQCC2):c.101G>A (p.Arg34Gln) | Pathogenic |
SpliceAI
2409 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 6:33690915:A:AG | acceptor_gain | 1.0000 |
| 6:33690916:G:GG | acceptor_gain | 1.0000 |
| 6:33690916:GCTCT:G | acceptor_gain | 1.0000 |
| 6:33691061:G:GT | donor_gain | 1.0000 |
| 6:33691105:CACAG:C | donor_loss | 1.0000 |
| 6:33691107:CAG:C | donor_loss | 1.0000 |
| 6:33691108:AG:A | donor_loss | 1.0000 |
| 6:33691109:GGTCT:G | donor_loss | 1.0000 |
| 6:33691110:G:GA | donor_loss | 1.0000 |
| 6:33691116:G:GT | donor_gain | 1.0000 |
| 6:33691613:A:AG | acceptor_gain | 1.0000 |
| 6:33691614:G:GG | acceptor_gain | 1.0000 |
| 6:33691614:GCCA:G | acceptor_gain | 1.0000 |
| 6:33691796:TGCA:T | acceptor_loss | 1.0000 |
| 6:33691797:GCAG:G | acceptor_loss | 1.0000 |
| 6:33691799:A:AG | acceptor_gain | 1.0000 |
| 6:33691799:A:T | acceptor_loss | 1.0000 |
| 6:33691799:AGAG:A | acceptor_gain | 1.0000 |
| 6:33691800:G:GC | acceptor_gain | 1.0000 |
| 6:33691800:GA:G | acceptor_gain | 1.0000 |
| 6:33691800:GAGG:G | acceptor_gain | 1.0000 |
| 6:33691800:GAGGA:G | acceptor_gain | 1.0000 |
| 6:33691924:AAGAT:A | donor_gain | 1.0000 |
| 6:33691925:AGAT:A | donor_gain | 1.0000 |
| 6:33691925:AGATG:A | donor_loss | 1.0000 |
| 6:33691926:G:GT | donor_gain | 1.0000 |
| 6:33691926:GAT:G | donor_gain | 1.0000 |
| 6:33691926:GATG:G | donor_loss | 1.0000 |
| 6:33691927:AT:A | donor_gain | 1.0000 |
| 6:33691927:ATG:A | donor_loss | 1.0000 |
AlphaMissense
815 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 6:33711570:A:C | F39L | 0.999 |
| 6:33711570:A:T | F39L | 0.999 |
| 6:33711572:A:G | F39L | 0.999 |
| 6:33711641:A:G | W16R | 0.999 |
| 6:33711641:A:T | W16R | 0.999 |
| 6:33711571:A:G | F39S | 0.998 |
| 6:33711639:C:A | W16C | 0.998 |
| 6:33711639:C:G | W16C | 0.998 |
| 6:33711661:A:G | F9S | 0.997 |
| 6:33701380:A:G | L60S | 0.996 |
| 6:33711604:C:T | G28D | 0.996 |
| 6:33711572:A:T | F39I | 0.995 |
| 6:33711658:A:G | L10P | 0.995 |
| 6:33711571:A:C | F39C | 0.994 |
| 6:33711595:A:G | L31P | 0.994 |
| 6:33711660:A:C | F9L | 0.994 |
| 6:33711660:A:T | F9L | 0.994 |
| 6:33711662:A:G | F9L | 0.994 |
| 6:33711671:A:G | Y6H | 0.994 |
| 6:33711640:C:G | W16S | 0.993 |
| 6:33711572:A:C | F39V | 0.992 |
| 6:33711605:C:G | G28R | 0.991 |
| 6:33711652:A:G | L12P | 0.991 |
| 6:33711661:A:C | F9C | 0.991 |
| 6:33711671:A:C | Y6D | 0.991 |
| 6:33711563:C:G | G42R | 0.990 |
| 6:33711563:C:T | G42R | 0.990 |
| 6:33711583:A:T | V35E | 0.990 |
| 6:33711592:C:G | R32P | 0.990 |
| 6:33711621:T:A | K22N | 0.990 |
dbSNP variants (sampled 300 via entrez): RS1000006383 (6:33698765 A>G), RS1000069937 (6:33700233 TAAAG>T), RS1000432649 (6:33702043 A>G), RS1000603989 (6:33711174 G>C,T), RS1000611937 (6:33708575 C>A,T), RS1000695509 (6:33698513 C>A,T), RS1000745399 (6:33710888 C>G,T), RS1000797016 (6:33705311 T>G), RS1001599007 (6:33699785 A>C), RS1001642476 (6:33701497 C>T), RS1001719139 (6:33713143 C>T), RS1001785773 (6:33708222 C>T), RS1001818428 (6:33707905 G>A,C), RS1001954958 (6:33704609 G>A), RS1002248462 (6:33710464 C>T)
Disease associations
OMIM: gene MIM:614461 | disease phenotypes: MIM:615824
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| mitochondrial complex III deficiency nuclear type 7 | Strong | Autosomal recessive |
| mitochondrial complex III deficiency | Supportive | Autosomal recessive |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| mitochondrial disease | Moderate | AR |
Mondo (2): mitochondrial complex III deficiency nuclear type 7 (MONDO:0014356), mitochondrial complex III deficiency (MONDO:0015448)
Orphanet (0):
HPO phenotypes
32 total (30 of 32 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000028 | Cryptorchidism |
| HP:0000286 | Epicanthus |
| HP:0000407 | Sensorineural hearing impairment |
| HP:0000582 | Upslanted palpebral fissure |
| HP:0000664 | Synophrys |
| HP:0000718 | Aggressive behavior |
| HP:0000752 | Hyperactivity |
| HP:0001250 | Seizure |
| HP:0001252 | Hypotonia |
| HP:0001263 | Global developmental delay |
| HP:0001319 | Neonatal hypotonia |
| HP:0001508 | Failure to thrive |
| HP:0001511 | Intrauterine growth retardation |
| HP:0001562 | Oligohydramnios |
| HP:0001623 | Breech presentation |
| HP:0001942 | Metabolic acidosis |
| HP:0002013 | Vomiting |
| HP:0002049 | Proximal renal tubular acidosis |
| HP:0002133 | Status epilepticus |
| HP:0002151 | Increased circulating lactate concentration |
| HP:0002465 | Poor speech |
| HP:0002490 | Increased CSF lactate |
| HP:0003128 | Lactic acidosis |
| HP:0003623 | Neonatal onset |
| HP:0004902 | Congenital lactic acidosis |
| HP:0005280 | Depressed nasal bridge |
| HP:0008314 | Decreased activity of mitochondrial complex II |
| HP:0008347 | Decreased activity of mitochondrial complex IV |
| HP:0011923 | Decreased activity of mitochondrial complex I |
GWAS associations
6 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST004110_15 | Gait speed in old age | 7.000000e-07 |
| GCST005951_153 | Body mass index | 5.000000e-09 |
| GCST006920_1 | Regular attendance at a gym or sports club | 4.000000e-08 |
| GCST007062_2 | Hodgkin’s lymphoma | 2.000000e-10 |
| GCST007656_5 | Chronic obstructive pulmonary disease or resting heart rate (pleiotropy) | 3.000000e-15 |
| GCST008919_7 | Asthma and attention deficit hyperactivity disorder | 4.000000e-08 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004340 | body mass index |
| EFO:0009592 | social interaction measurement |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
38 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, increases expression, decreases expression | 4 |
| sodium arsenite | decreases expression | 2 |
| Panobinostat | decreases expression, affects cotreatment | 2 |
| GSK-J4 | decreases expression | 1 |
| methylmercuric chloride | decreases expression | 1 |
| nobiletin | decreases expression, decreases reaction | 1 |
| sodium arsenate | decreases expression, decreases reaction | 1 |
| tris(2-butoxyethyl) phosphate | affects expression | 1 |
| arsenite | affects binding, increases reaction | 1 |
| cobaltous chloride | decreases expression | 1 |
| perfluorooctanoic acid | decreases expression | 1 |
| potassium chromate(VI) | affects cotreatment, decreases expression | 1 |
| epigallocatechin gallate | affects cotreatment, decreases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| jinfukang | increases expression | 1 |
| Temozolomide | increases expression | 1 |
| Decitabine | affects expression | 1 |
| Air Pollutants, Occupational | affects expression | 1 |
| Atrazine | increases expression | 1 |
| Benzo(a)pyrene | increases methylation | 1 |
| Cadmium | increases abundance, increases expression | 1 |
| Cisplatin | affects expression | 1 |
| Coumestrol | increases expression | 1 |
| Doxorubicin | increases expression | 1 |
| Formaldehyde | decreases expression | 1 |
| Hydralazine | affects cotreatment, increases expression | 1 |
| Rotenone | increases expression | 1 |
| Thiram | decreases expression | 1 |
| Tobacco Smoke Pollution | increases expression | 1 |
Cellosaurus cell lines
2 cell lines: 1 transformed cell line, 1 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B3KX | Abcam HEK293T UQCC2 KO | Transformed cell line | Female |
| CVCL_E2NI | HAP1 UQCC2 (-) | Cancer cell line | Male |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Associated diseases: mitochondrial complex III deficiency nuclear type 7, mitochondrial complex III deficiency nuclear type 1, mitochondrial disease
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Hodgkins lymphoma, mitochondrial complex III deficiency, mitochondrial complex III deficiency nuclear type 7