URB2
gene geneOn this page
Also known as NPA2NET10
Summary
URB2 (URB2 ribosome biogenesis homolog, HGNC:28967) is a protein-coding gene on chromosome 1q42.13, encoding Unhealthy ribosome biogenesis protein 2 homolog (Q14146). Essential for hematopietic stem cell development through the regulation of p53/TP53 pathway. It is a selective cancer dependency (DepMap: 88.9% of cell lines).
Predicted to be involved in regulation of signal transduction by p53 class mediator and ribosome biogenesis. Located in aggresome; midbody; and nucleolus.
Source: NCBI Gene 9816 — RefSeq curated summary.
At a glance
- GWAS associations: 8
- Clinical variants (ClinVar): 247 total — 1 pathogenic
- Druggable target: yes
- Cancer dependency (DepMap): dependent in 88.9% of screened cell lines
- MANE Select transcript:
NM_014777
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:28967 |
| Approved symbol | URB2 |
| Name | URB2 ribosome biogenesis homolog |
| Location | 1q42.13 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | NPA2, NET10 |
| Ensembl gene | ENSG00000135763 |
| Ensembl biotype | protein_coding |
| OMIM | 619372 |
| Entrez | 9816 |
Gene structure
Transcript identifiers
Ensembl transcripts: 7 — 7 protein_coding
ENST00000258243, ENST00000434387, ENST00000869045, ENST00000922771, ENST00000922772, ENST00000922773, ENST00000944234
RefSeq mRNA: 2 — MANE Select: NM_014777
NM_001314021, NM_014777
CCDS: CCDS31052
Canonical transcript exons
ENST00000258243 — 10 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000921362 | 229634917 | 229638247 |
| ENSE00000921363 | 229643533 | 229643693 |
| ENSE00000921364 | 229645859 | 229645969 |
| ENSE00000921365 | 229647510 | 229647752 |
| ENSE00000921366 | 229651235 | 229651322 |
| ENSE00000921367 | 229654249 | 229654388 |
| ENSE00001120505 | 229632269 | 229632445 |
| ENSE00001120516 | 229626247 | 229626356 |
| ENSE00001175529 | 229659100 | 229660200 |
| ENSE00001175534 | 229627621 | 229627759 |
Expression profiles
Bgee: expression breadth ubiquitous, 197 present calls, max score 82.32.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 6.4642 / max 50.0734, expressed in 1653 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 9010 | 6.3445 | 1651 |
| 9011 | 0.1197 | 38 |
Top tissues by expression
281 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 82.32 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 79.46 | gold quality |
| gastrocnemius | UBERON:0001388 | 78.15 | gold quality |
| muscle of leg | UBERON:0001383 | 77.08 | gold quality |
| ventricular zone | UBERON:0003053 | 76.82 | gold quality |
| stromal cell of endometrium | CL:0002255 | 75.41 | gold quality |
| islet of Langerhans | UBERON:0000006 | 75.22 | gold quality |
| ganglionic eminence | UBERON:0004023 | 75.09 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 74.52 | gold quality |
| tibia | UBERON:0000979 | 73.86 | gold quality |
| cortical plate | UBERON:0005343 | 73.76 | gold quality |
| embryo | UBERON:0000922 | 73.55 | gold quality |
| skeletal muscle organ | UBERON:0014892 | 73.16 | gold quality |
| muscle organ | UBERON:0001630 | 73.15 | gold quality |
| tongue squamous epithelium | UBERON:0006919 | 72.77 | gold quality |
| cartilage tissue | UBERON:0002418 | 72.65 | silver quality |
| left uterine tube | UBERON:0001303 | 72.57 | gold quality |
| hair follicle | UBERON:0002073 | 72.39 | gold quality |
| adrenal tissue | UBERON:0018303 | 72.08 | gold quality |
| pancreas | UBERON:0001264 | 71.88 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 71.57 | gold quality |
| right adrenal gland | UBERON:0001233 | 71.54 | gold quality |
| granulocyte | CL:0000094 | 71.49 | gold quality |
| esophagus mucosa | UBERON:0002469 | 71.38 | gold quality |
| squamous epithelium | UBERON:0006914 | 71.36 | silver quality |
| left adrenal gland | UBERON:0001234 | 71.30 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 71.29 | gold quality |
| peritoneum | UBERON:0002358 | 71.28 | gold quality |
| omental fat pad | UBERON:0010414 | 71.28 | gold quality |
| leukocyte | CL:0000738 | 71.19 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 3.29 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
43 targeting URB2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-3924 | 100.00 | 72.09 | 2394 |
| HSA-MIR-4789-3P | 99.99 | 70.75 | 2484 |
| HSA-MIR-4482-3P | 99.98 | 72.50 | 3147 |
| HSA-MIR-4267 | 99.96 | 66.53 | 2368 |
| HSA-MIR-627-3P | 99.90 | 71.42 | 3316 |
| HSA-MIR-7162-3P | 99.89 | 68.16 | 1682 |
| HSA-MIR-12119 | 99.87 | 68.35 | 1653 |
| HSA-MIR-137-3P | 99.87 | 74.74 | 2401 |
| HSA-MIR-6764-5P | 99.75 | 67.89 | 2304 |
| HSA-MIR-1825 | 99.72 | 68.11 | 1089 |
| HSA-MIR-377-5P | 99.70 | 65.28 | 712 |
| HSA-MIR-6086 | 99.70 | 65.38 | 699 |
| HSA-MIR-466 | 99.67 | 70.85 | 2863 |
| HSA-MIR-488-3P | 99.61 | 68.79 | 1731 |
| HSA-MIR-7159-3P | 99.51 | 70.17 | 1920 |
| HSA-MIR-186-3P | 99.51 | 66.24 | 1685 |
| HSA-MIR-217-5P | 99.49 | 69.93 | 1419 |
| HSA-MIR-548AV-3P | 99.43 | 68.50 | 1721 |
| HSA-MIR-4480 | 99.42 | 66.02 | 735 |
| HSA-MIR-183-3P | 99.41 | 69.41 | 1598 |
| HSA-MIR-6505-3P | 99.34 | 67.39 | 1071 |
| HSA-MIR-10522-5P | 99.26 | 68.50 | 2087 |
| HSA-MIR-6807-3P | 99.15 | 69.23 | 1275 |
| HSA-MIR-4656 | 98.79 | 66.22 | 1306 |
| HSA-MIR-501-5P | 98.77 | 68.88 | 1328 |
| HSA-MIR-4635 | 98.74 | 67.63 | 1339 |
| HSA-MIR-655-5P | 98.74 | 65.93 | 888 |
| HSA-MIR-6830-3P | 98.62 | 68.07 | 1760 |
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 88.9% of screened cell lines.
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | urb2 | ENSDARG00000003217 |
| mus_musculus | Urb2 | ENSMUSG00000031976 |
| rattus_norvegicus | Urb2 | ENSRNOG00000026853 |
Protein
Protein identifiers
Unhealthy ribosome biogenesis protein 2 homolog — Q14146 (reviewed: Q14146)
All UniProt accessions (2): Q14146, Q5VYD0
UniProt curated annotations — full annotation on UniProt →
Function. Essential for hematopietic stem cell development through the regulation of p53/TP53 pathway.
Subcellular location. Nucleus. Nucleolus.
RefSeq proteins (2): NP_001300950, NP_055592* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR018849 | Urb2/Npa2_C | Domain |
| IPR052609 | Ribosome_Biogenesis_Reg | Family |
Pfam: PF10441
UniProt features (3 total): sequence variant 2, chain 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q14146-F1 | 82.66 | 0.28 |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 146 (showing top):
ELVIDGE_HYPOXIA_DN, GOBP_RIBOSOME_BIOGENESIS, MONNIER_POSTRADIATION_TUMOR_ESCAPE_UP, PUJANA_CHEK2_PCC_NETWORK, WEI_MYCN_TARGETS_WITH_E_BOX, HOSHIDA_LIVER_CANCER_LATE_RECURRENCE_DN, LIAO_METASTASIS, GOBP_SIGNAL_TRANSDUCTION_BY_P53_CLASS_MEDIATOR, DODD_NASOPHARYNGEAL_CARCINOMA_UP, GOBP_REGULATION_OF_SIGNAL_TRANSDUCTION_BY_P53_CLASS_MEDIATOR, GOBP_RIBONUCLEOPROTEIN_COMPLEX_BIOGENESIS, GINESTIER_BREAST_CANCER_ZNF217_AMPLIFIED_DN, GOCC_MIDBODY, GOCC_NUCLEOLUS, ELVIDGE_HIF1A_TARGETS_UP
GO Biological Process (2): ribosome biogenesis (GO:0042254), regulation of signal transduction by p53 class mediator (GO:1901796)
GO Molecular Function (0):
GO Cellular Component (4): nucleolus (GO:0005730), aggresome (GO:0016235), midbody (GO:0030496), nucleus (GO:0005634)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| ribonucleoprotein complex biogenesis | 1 |
| signal transduction by p53 class mediator | 1 |
| regulation of intracellular signal transduction | 1 |
| nuclear lumen | 1 |
| intracellular membraneless organelle | 1 |
| inclusion body | 1 |
| cellular anatomical structure | 1 |
| intracellular membrane-bounded organelle | 1 |
Protein interactions and networks
STRING
1505 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| URB2 | URB1 | O60287 | 860 |
| URB2 | TAF1B | Q53T94 | 581 |
| URB2 | BKGD | Q9H0W9 | 480 |
| URB2 | FAM89B | Q8N5H3 | 478 |
| URB2 | UNC119B | A6NIH7 | 450 |
| URB2 | ZNF567 | Q8N184 | 430 |
| URB2 | SYCE1L | A8MT33 | 426 |
| URB2 | FAM194C | Q8ND61 | 400 |
| URB2 | ZNF775 | Q96BV0 | 400 |
| URB2 | UTP15 | Q8TED0 | 396 |
| URB2 | SCCPDH | Q8NBX0 | 377 |
| URB2 | CCDC102B | Q68D86 | 375 |
| URB2 | WDR43 | Q15061 | 362 |
| URB2 | PRPSAP1 | Q14558 | 361 |
| URB2 | DENND2C | Q68D51 | 358 |
IntAct
111 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| VSIG1 | TTI1 | psi-mi:“MI:0914”(association) | 0.640 |
| FGF3 | GTPBP10 | psi-mi:“MI:0914”(association) | 0.530 |
| MECP2 | GTPBP10 | psi-mi:“MI:0914”(association) | 0.530 |
| ZNF512 | ZNF724 | psi-mi:“MI:0914”(association) | 0.530 |
| RBM34 | NVL | psi-mi:“MI:0914”(association) | 0.530 |
| RRP8 | NVL | psi-mi:“MI:0914”(association) | 0.530 |
| MACROH2A2 | PPM1G | psi-mi:“MI:0914”(association) | 0.530 |
| SCN3B | ABCC5 | psi-mi:“MI:0914”(association) | 0.530 |
| RPL18A | RRP8 | psi-mi:“MI:0914”(association) | 0.530 |
| MAGEB2 | POLRMT | psi-mi:“MI:0914”(association) | 0.530 |
| CCDC59 | GAPDHS | psi-mi:“MI:0914”(association) | 0.530 |
| VSIG1 | TNPO2 | psi-mi:“MI:0914”(association) | 0.530 |
| RBM4 | NVL | psi-mi:“MI:0914”(association) | 0.530 |
| SRPK2 | RRP9 | psi-mi:“MI:0914”(association) | 0.530 |
| ILVBL | SLC33A1 | psi-mi:“MI:0914”(association) | 0.530 |
| APLNR | SLC33A1 | psi-mi:“MI:0914”(association) | 0.530 |
| ABT1 | ZNF316 | psi-mi:“MI:0914”(association) | 0.530 |
| URB2 | RPL13A | psi-mi:“MI:0914”(association) | 0.530 |
| DGCR2 | HOXD13 | psi-mi:“MI:0914”(association) | 0.530 |
| RPL13A | NVL | psi-mi:“MI:0914”(association) | 0.530 |
| URB2 | PLEC | psi-mi:“MI:0915”(physical association) | 0.400 |
BioGRID (138): URB2 (Affinity Capture-MS), URB2 (Affinity Capture-MS), URB2 (Affinity Capture-MS), URB2 (Affinity Capture-MS), URB2 (Affinity Capture-MS), URB2 (Affinity Capture-MS), URB2 (Affinity Capture-MS), URB2 (Affinity Capture-MS), URB2 (Affinity Capture-MS), URB2 (Affinity Capture-MS), URB2 (Affinity Capture-MS), URB2 (Affinity Capture-MS), URB2 (Affinity Capture-MS), URB2 (Affinity Capture-MS), URB2 (Affinity Capture-MS)
ESM2 similar proteins: A0JM49, A2AKG8, B0V0U5, B1AUR6, C5J7W8, E1BGH8, E1C231, E1C2Z0, E7FGT5, E7FH61, E9Q3L2, F6S215, O08662, O60287, O94822, P42356, P57678, P78527, P97313, Q13315, Q13535, Q14146, Q1RLU1, Q2TAW0, Q3TQQ9, Q3URQ0, Q571H0, Q5RDK1, Q5VW36, Q5WNI9, Q5XI94, Q5ZM41, Q62388, Q6A009, Q6DFV1, Q6PQD5, Q6ZRQ5, Q7SY48, Q86XI2, Q8BKX6
Diamond homologs: B0V0U5, Q14146
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 131 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Peptide chain elongation | 10 | 16.1× | 4e-08 |
| Viral mRNA Translation | 10 | 16.1× | 4e-08 |
| PELO:HBS1L and ABCE1 dissociate a ribosome on a non-stop mRNA | 10 | 15.9× | 4e-08 |
| Selenocysteine synthesis | 10 | 15.2× | 4e-08 |
| Eukaryotic Translation Termination | 10 | 15.2× | 4e-08 |
| Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC) | 10 | 14.9× | 4e-08 |
| ZNF598 and the Ribosome-associated Quality Trigger (RQT) complex dissociate a ribosome stalled on a no-go mRNA | 10 | 14.9× | 4e-08 |
| rRNA modification in the nucleus and cytosol | 6 | 14.2× | 7e-05 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| negative regulation of viral genome replication | 5 | 16.0× | 2e-03 |
| cytoplasmic translation | 10 | 15.8× | 3e-07 |
| negative regulation of translation | 8 | 13.4× | 3e-05 |
| rRNA processing | 10 | 12.1× | 2e-06 |
| translation | 13 | 11.4× | 8e-08 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
247 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 0 |
| Uncertain significance | 203 |
| Likely benign | 24 |
| Benign | 3 |
Top pathogenic / likely-pathogenic (1)
| Variant ID | HGVS | Classification |
|---|---|---|
| 3391841 | GRCh37/hg19 1q42.13-43(chr1:228803269-243112182)x3 | Pathogenic |
SpliceAI
2100 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:229627760:G:GG | donor_gain | 1.0000 |
| 1:229634908:A:AG | acceptor_gain | 1.0000 |
| 1:229634910:T:G | acceptor_gain | 1.0000 |
| 1:229645858:GGCT:G | acceptor_gain | 1.0000 |
| 1:229647506:TTAGC:T | acceptor_loss | 1.0000 |
| 1:229647507:TAGCT:T | acceptor_loss | 1.0000 |
| 1:229647508:A:AG | acceptor_gain | 1.0000 |
| 1:229647509:G:GC | acceptor_gain | 1.0000 |
| 1:229647509:GC:G | acceptor_gain | 1.0000 |
| 1:229647509:GCT:G | acceptor_gain | 1.0000 |
| 1:229647509:GCTC:G | acceptor_gain | 1.0000 |
| 1:229647509:GCTCT:G | acceptor_gain | 1.0000 |
| 1:229647749:TAAG:T | donor_loss | 1.0000 |
| 1:229647750:AAG:A | donor_loss | 1.0000 |
| 1:229647751:AGG:A | donor_loss | 1.0000 |
| 1:229647752:GGTGA:G | donor_loss | 1.0000 |
| 1:229647754:T:G | donor_loss | 1.0000 |
| 1:229654361:GGCCC:G | donor_gain | 1.0000 |
| 1:229659098:A:AG | acceptor_gain | 1.0000 |
| 1:229659098:AG:A | acceptor_gain | 1.0000 |
| 1:229659098:AGGT:A | acceptor_gain | 1.0000 |
| 1:229659099:G:C | acceptor_loss | 1.0000 |
| 1:229659099:G:GT | acceptor_gain | 1.0000 |
| 1:229659099:GG:G | acceptor_gain | 1.0000 |
| 1:229659099:GGT:G | acceptor_gain | 1.0000 |
| 1:229659099:GGTG:G | acceptor_gain | 1.0000 |
| 1:229659099:GGTGA:G | acceptor_gain | 1.0000 |
| 1:229626352:CCGAG:C | donor_loss | 0.9900 |
| 1:229626353:CGAGG:C | donor_loss | 0.9900 |
| 1:229627615:TTTTA:T | acceptor_loss | 0.9900 |
AlphaMissense
9895 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 1:229627719:C:A | A29D | 0.993 |
| 1:229632353:T:A | W71R | 0.993 |
| 1:229632353:T:C | W71R | 0.993 |
| 1:229627721:T:A | W30R | 0.990 |
| 1:229627721:T:C | W30R | 0.990 |
| 1:229635835:T:A | W408R | 0.990 |
| 1:229635835:T:C | W408R | 0.990 |
| 1:229635916:T:A | W435R | 0.990 |
| 1:229635916:T:C | W435R | 0.990 |
| 1:229635844:T:C | C411R | 0.989 |
| 1:229632281:T:A | W47R | 0.988 |
| 1:229632281:T:C | W47R | 0.988 |
| 1:229627710:C:A | A26D | 0.987 |
| 1:229627715:T:C | F28L | 0.986 |
| 1:229627717:T:A | F28L | 0.986 |
| 1:229627717:T:G | F28L | 0.986 |
| 1:229627753:A:C | K40N | 0.986 |
| 1:229627753:A:T | K40N | 0.986 |
| 1:229635586:T:C | F325L | 0.983 |
| 1:229635588:C:A | F325L | 0.983 |
| 1:229635588:C:G | F325L | 0.983 |
| 1:229635838:T:C | F409L | 0.983 |
| 1:229635840:C:A | F409L | 0.983 |
| 1:229635840:C:G | F409L | 0.983 |
| 1:229636240:A:C | S543R | 0.983 |
| 1:229636242:C:A | S543R | 0.983 |
| 1:229636242:C:G | S543R | 0.983 |
| 1:229632273:T:C | L44S | 0.981 |
| 1:229635846:T:G | C411W | 0.980 |
| 1:229659139:G:C | G1473R | 0.980 |
dbSNP variants (sampled 300 via entrez): RS1000061113 (1:229633470 A>T), RS1000225365 (1:229652031 A>T), RS1000281800 (1:229649180 T>C), RS1000308866 (1:229632561 G>A,T), RS1000353081 (1:229638868 G>A), RS1000438663 (1:229649480 C>A), RS1000470818 (1:229655757 A>C), RS1000657933 (1:229656961 T>G), RS1000721092 (1:229649351 A>T), RS1000727300 (1:229655526 G>A), RS1000774013 (1:229643084 G>A,T), RS1000774790 (1:229650739 A>T), RS1000870751 (1:229643328 A>G), RS1000922957 (1:229656537 A>C,G), RS1000986022 (1:229649159 C>A,T)
Disease associations
OMIM: gene MIM:619372 | disease phenotypes:
GenCC curated gene-disease
Mondo (2): prostate cancer (MONDO:0008315), epilepsy (MONDO:0005027)
Orphanet (1): Familial prostate cancer (Orphanet:1331)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
8 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001980_3 | Circulating myeloperoxidase levels (plasma) | 1.000000e-06 |
| GCST002345_4 | Response to cytadine analogues (cytosine arabinoside) | 4.000000e-07 |
| GCST007857_6 | Fasting blood insulin adjusted for BMI | 3.000000e-07 |
| GCST012033_5 | Sleep (1/3-day periodicity) | 2.000000e-11 |
| GCST90002390_341 | Mean corpuscular hemoglobin | 3.000000e-15 |
| GCST90002392_257 | Mean corpuscular volume | 7.000000e-20 |
| GCST90002396_167 | Mean reticulocyte volume | 7.000000e-21 |
| GCST90002397_755 | Mean spheric corpuscular volume | 5.000000e-25 |
EFO canonical traits (3, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0005243 | myeloperoxidase measurement |
| EFO:0004527 | mean corpuscular hemoglobin |
| EFO:0010701 | mean reticulocyte volume |
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D004827 | Epilepsy | C10.228.140.490 |
| D011471 | Prostatic Neoplasms | C04.588.945.440.770; C12.100.500.260.750; C12.100.500.565.625; C12.200.294.260.750; C12.200.294.565.625; C12.200.758.409.750; C12.900.619.750 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL6067278 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
4 potent at pChembl≥5 of 4 total, top 4 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 5.67 | Kd | 2118 | nM | CHEMBL5653589 |
| 5.67 | ED50 | 2118 | nM | CHEMBL5653589 |
| 5.54 | Kd | 2878 | nM | CHEMBL3752910 |
| 5.54 | ED50 | 2878 | nM | CHEMBL3752910 |
PubChem BioAssay actives
2 with measured affinity, of 4 total; 2 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2149738: Binding affinity to human URB2 incubated for 45 mins by Kinobead based pull down assay | kd | 2.1180 | uM |
| 4-methyl-3-[(1-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2149738: Binding affinity to human URB2 incubated for 45 mins by Kinobead based pull down assay | kd | 2.8775 | uM |
CTD chemical–gene interactions
42 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Estradiol | increases expression | 2 |
| Formaldehyde | decreases expression | 2 |
| Nickel | increases expression | 2 |
| Cyclosporine | increases expression | 2 |
| Aflatoxin B1 | increases expression, increases methylation | 2 |
| Cadmium Chloride | decreases expression | 2 |
| 3-((6-(2-methoxyphenyl)pyrimidin-4-yl)amino)phenyl)methane sulfonamide | decreases expression | 1 |
| afuresertib | decreases expression | 1 |
| alpha phellandrene | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | decreases expression | 1 |
| trichostatin A | affects expression | 1 |
| sodium arsenite | decreases expression | 1 |
| cobaltous chloride | decreases expression | 1 |
| zinc chromate | increases abundance, decreases expression | 1 |
| chromium hexavalent ion | increases abundance, decreases expression | 1 |
| perfluoro-n-nonanoic acid | increases expression | 1 |
| jinfukang | affects cotreatment, decreases expression | 1 |
| Air Pollutants | decreases expression, increases abundance | 1 |
| Atrazine | decreases expression | 1 |
| Calcitriol | decreases expression, affects cotreatment | 1 |
| Cisplatin | affects cotreatment, decreases expression | 1 |
| Dimethyl Sulfoxide | increases expression | 1 |
| Ethyl Methanesulfonate | decreases expression | 1 |
| Flame Retardants | increases expression | 1 |
| Hydrogen Peroxide | affects expression | 1 |
| Methyl Methanesulfonate | decreases expression | 1 |
| Oxygen | decreases expression | 1 |
| Potassium Dichromate | decreases expression | 1 |
| Quercetin | decreases expression | 1 |
ChEMBL screening assays
1 unique, capped per target: 1 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL5652780 | Binding | Binding affinity to human URB2 incubated for 45 mins by Kinobead based pull down assay | NVP-BHG712: Effects of Regioisomers on the Affinity and Selectivity toward the EPHrin Family. — ChemMedChem |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00029224 | PHASE4 | COMPLETED | Treatment With Zoledronic Acid in Patients With Breast Cancer, Multiple Myeloma, and Prostate Cancer With Cancer Related Bone Lesions |
| NCT00035997 | PHASE4 | COMPLETED | Open-label Trial on the Effect of I.V. Zoledronic Acid 4 mg on Bone Density in Hormone Sensitive Prostate Cancer Patients With Bone Metastasis |
| NCT00063609 | PHASE4 | COMPLETED | The Effect of Zoledronic Acid on Bone Loss in Prostate Cancer Patients Undergoing Androgen Deprivation Therapy |
| NCT00103623 | PHASE4 | SUSPENDED | The Plenaxis® Experience Study |
| NCT00106392 | PHASE4 | COMPLETED | A Safety and Efficacy Study of Prograf in the Prevention of Erectile Dysfunction After Radical Prostatectomy |
| NCT00185029 | PHASE4 | UNKNOWN | MR-Lymphography and Lymph Node Staging in Prostate Cancer |
| NCT00199485 | PHASE4 | COMPLETED | Angelica Sinensis for the Treatment of Hot Flashes in Men Undergoing LHRH Therapy for Prostate Cancer |
| NCT00219219 | PHASE4 | COMPLETED | Zoledronic Acid in the Prevention of Skeletal-related Events in Hormone Refractory and Hormone-sensitive Prostate Cancer Patients With Bone Metastases |
| NCT00219271 | PHASE4 | COMPLETED | Effect Of Zoledronic Acid On Circulating And Bone Marrow-Residing Prostate Cancer Cells In Patients With Clinically Localized Prostate Cancer |
| NCT00237146 | PHASE4 | COMPLETED | Study to Evaluate Zoledronic Acid on Quality of Life and Skeletal-related Events as Adjuvant Treatment in Patients With Hormone-naïve Prostate Cancer and Bone Metastasis Who Have Undergone Orchiectomy |
| NCT00242554 | PHASE4 | COMPLETED | Open-label Phase IV Clinical Trial to Evaluate the Safety and Tolerability of Zoledronic Acid in Patients With Prostate Cancer and Bone Metastases |
| NCT00280098 | PHASE4 | COMPLETED | Docetaxel in the Treatment of Hormone Refractory Prostate Cancer |
| NCT00293696 | PHASE4 | COMPLETED | Casodex/Zoladex Biomarkers in Localised Prostate Cancer |
| NCT00334139 | PHASE4 | COMPLETED | Effect of Zoledronic Acid on Bone Metabolism in Patients With Bone Metastasis and Prostate or Breast Cancer |
| NCT00375765 | PHASE4 | COMPLETED | Effects On Dihydrotestosterone Regulated Gene Expression In Benign Prostatic Hyperplasia Or Prostate Cancer |
| NCT00391690 | PHASE4 | COMPLETED | Evaluation of Bone Markers as Diagnostic Tools for Early Detection of Bone Metastases in Patients With High Risk Prostate Cancer |
| NCT00422708 | PHASE4 | COMPLETED | Local Anesthesia for Prostate Biopsy |
| NCT00526331 | PHASE4 | COMPLETED | Evaluation of Arterial Pressure Based Cardiac Output for Goal-Directed Perioperative Therapy |
| NCT00590213 | PHASE4 | COMPLETED | Compare the Value of Prophylactic Versus Therapeutic Breast Radiotherapy in CASODEX |
| NCT00629330 | PHASE4 | TERMINATED | Dissemination of Prostate Cancer Screening to PCP’s in African American Communities |
| NCT00771966 | PHASE4 | COMPLETED | Radical Prostatectomy and Perioperative Fluid Therapy |
| NCT00805701 | PHASE4 | COMPLETED | Study Assessing The Efficacy And Safety Of Avodart (Dutasteride) At Improving Urinary Symptoms In Men With Prostate Cancer Who Are Undergoing Seed Implantation |
| NCT00859027 | PHASE4 | COMPLETED | Effect Of Risedronate On Bone Mass In Older Men Receiving Neoadjuvant Therapy For Prostate Cancer |
| NCT00906269 | PHASE4 | UNKNOWN | Can Hyperbaric Oxygen Improve Erectile Function Following Surgery for Prostate Cancer |
| NCT00953277 | PHASE4 | COMPLETED | Study of Nerve Reconstruction Using AVANCE in Subjects Who Undergo Robotic Assisted Prostatectomy for Treatment of Prostate Cancer |
| NCT00982800 | PHASE4 | COMPLETED | Does Postoperative Gabapentin Reduce Pain, Opioid Consumption and Anxiety and Have a Positive Effect on Health Related Quality of Life After Radical Prostatectomy? |
| NCT01083199 | PHASE4 | COMPLETED | Global Performance Evaluation of the AMS CONTINUUM™ Device |
| NCT01136226 | PHASE4 | COMPLETED | Evaluate Recovery of Testosterone for Patients Using Eligard |
| NCT01161563 | PHASE4 | COMPLETED | Randomized Crossover Trial to Assess the Tolerability of Gonadotropin Releasing Hormone (GnRH) Analogue Administration |
| NCT01230905 | PHASE4 | COMPLETED | Study to Monitor the Effects of Androgen Suppression Treatment on the Heart |
| NCT01296672 | PHASE4 | COMPLETED | 3 Month Finasteride Challenge Test Can Significantly Improve the Performance of Screening for Prostate Cancer |
| NCT01365143 | PHASE4 | TERMINATED | Prospective Randomized Trial Comparing Robotic Versus Open Radical Prostatectomy |
| NCT01379742 | PHASE4 | UNKNOWN | Comparison of Between ThinSeed™ and OncoSeed™ for Permanent Prostate Brachytherapy |
| NCT01486563 | PHASE4 | COMPLETED | Hydroxyethyl Starch and Renal Function After Radical Prostatectomy |
| NCT01511874 | PHASE4 | COMPLETED | Efficacy and Safety Study of ELIGARD 22.5mg With Prostate Cancer |
| NCT01512472 | PHASE4 | TERMINATED | Firmagon (Degarelix) Intermittent Therapy |
| NCT01547416 | PHASE4 | COMPLETED | The Effect of Combined General/Epidural Anesthesia Versus General Anesthesia on Diaphragmatic Function |
| NCT01571544 | PHASE4 | COMPLETED | The Use of Thermal Suits as Preventing Hypothermia During Surgery |
| NCT01581749 | PHASE4 | UNKNOWN | Evaluation of Truebeam for Low-Intermediate Risk Prostate Cancer |
| NCT01649635 | PHASE4 | COMPLETED | Study of Cabazitaxel Combined With Prednisone and Prophylaxis of Neutropenia Complications in the Treatment of Patients With Metastatic Castration-resistant Prostate Cancer |
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.