USP25
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Also known as USP21
Summary
USP25 (ubiquitin specific peptidase 25, HGNC:12624) is a protein-coding gene on chromosome 21q21.1, encoding Ubiquitin carboxyl-terminal hydrolase 25 (Q9UHP3). Deubiquitinating enzyme that hydrolyzes ubiquitin moieties conjugated to substrates and thus, functions in various biological processes including inflammation and immune response.
Ubiquitin (MIM 191339) is a highly conserved 76-amino acid protein involved in regulation of intracellular protein breakdown, cell cycle regulation, and stress response. Ubiquitin is released from degraded proteins by disassembly of the polyubiquitin chains, which is mediated by ubiquitin-specific proteases (USPs), such as USP25 (Valero et al., 1999 [PubMed 10644437]).
Source: NCBI Gene 29761 — RefSeq curated summary.
At a glance
- Gene–disease (curated): epilepsy, idiopathic generalized, susceptibility to, 19 (Moderate, GenCC) — +1 more curated relationship
- GWAS associations: 9
- Clinical variants (ClinVar): 245 total
- Druggable target: yes
- MANE Select transcript:
NM_001283041
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:12624 |
| Approved symbol | USP25 |
| Name | ubiquitin specific peptidase 25 |
| Location | 21q21.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | USP21 |
| Ensembl gene | ENSG00000155313 |
| Ensembl biotype | protein_coding |
| OMIM | 604736 |
| Entrez | 29761 |
Gene structure
Transcript identifiers
Ensembl transcripts: 22 — 18 protein_coding, 2 retained_intron, 2 protein_coding_CDS_not_defined
ENST00000285679, ENST00000285681, ENST00000351097, ENST00000400183, ENST00000449491, ENST00000453553, ENST00000464435, ENST00000478932, ENST00000547201, ENST00000549362, ENST00000926090, ENST00000926091, ENST00000926092, ENST00000926093, ENST00000941966, ENST00000941967, ENST00000941968, ENST00000941969, ENST00000941970, ENST00000941971, ENST00000941972, ENST00000941973
RefSeq mRNA: 9 — MANE Select: NM_001283041
NM_001283041, NM_001283042, NM_001352560, NM_001352561, NM_001388299, NM_001388300, NM_001388301, NM_001388302, NM_013396
CCDS: CCDS33515, CCDS63336, CCDS63337
Canonical transcript exons
ENST00000400183 — 26 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001020263 | 15877796 | 15877991 |
| ENSE00001020266 | 15842398 | 15842540 |
| ENSE00001020279 | 15818698 | 15818846 |
| ENSE00001020284 | 15866266 | 15866344 |
| ENSE00001020305 | 15765997 | 15766141 |
| ENSE00001020310 | 15824039 | 15824166 |
| ENSE00001020314 | 15831401 | 15831629 |
| ENSE00001020318 | 15849777 | 15849872 |
| ENSE00001020323 | 15864268 | 15864446 |
| ENSE00001020326 | 15830531 | 15830601 |
| ENSE00001020331 | 15874403 | 15874526 |
| ENSE00001020332 | 15870068 | 15870147 |
| ENSE00001020334 | 15824966 | 15825061 |
| ENSE00001020335 | 15833348 | 15833548 |
| ENSE00001183063 | 15826204 | 15826365 |
| ENSE00001183092 | 15826977 | 15827203 |
| ENSE00001382509 | 15762891 | 15762968 |
| ENSE00001736182 | 15847663 | 15847776 |
| ENSE00003471173 | 15799757 | 15799843 |
| ENSE00003513801 | 15777904 | 15778027 |
| ENSE00003563904 | 15805121 | 15805258 |
| ENSE00003612782 | 15791502 | 15791664 |
| ENSE00003615186 | 15808809 | 15808885 |
| ENSE00003654731 | 15811137 | 15811210 |
| ENSE00003745204 | 15878303 | 15880064 |
| ENSE00003921014 | 15729982 | 15730438 |
Expression profiles
Bgee: expression breadth ubiquitous, 285 present calls, max score 99.91.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 18.2039 / max 212.9012, expressed in 1807 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 188507 | 11.1908 | 1772 |
| 188508 | 6.8572 | 1699 |
| 188511 | 0.1559 | 53 |
Top tissues by expression
288 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| sperm | CL:0000019 | 99.91 | gold quality |
| male germ cell | CL:0000015 | 98.36 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 97.71 | gold quality |
| gluteal muscle | UBERON:0002000 | 97.09 | gold quality |
| amniotic fluid | UBERON:0000173 | 96.95 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 96.46 | gold quality |
| biceps brachii | UBERON:0001507 | 96.44 | gold quality |
| calcaneal tendon | UBERON:0003701 | 96.33 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 96.18 | gold quality |
| muscle of leg | UBERON:0001383 | 96.17 | gold quality |
| gastrocnemius | UBERON:0001388 | 96.17 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 96.16 | gold quality |
| vastus lateralis | UBERON:0001379 | 96.16 | gold quality |
| muscle organ | UBERON:0001630 | 96.16 | gold quality |
| deltoid | UBERON:0001476 | 96.07 | gold quality |
| quadriceps femoris | UBERON:0001377 | 96.04 | gold quality |
| diaphragm | UBERON:0001103 | 95.08 | gold quality |
| tibialis anterior | UBERON:0001385 | 95.06 | gold quality |
| endothelial cell | CL:0000115 | 94.68 | gold quality |
| triceps brachii | UBERON:0001509 | 94.24 | gold quality |
| adrenal tissue | UBERON:0018303 | 93.85 | gold quality |
| secondary oocyte | CL:0000655 | 93.39 | gold quality |
| cauda epididymis | UBERON:0004360 | 93.09 | gold quality |
| left testis | UBERON:0004533 | 92.83 | gold quality |
| colonic epithelium | UBERON:0000397 | 92.70 | gold quality |
| muscle tissue | UBERON:0002385 | 92.69 | gold quality |
| right testis | UBERON:0004534 | 92.58 | gold quality |
| monocyte | CL:0000576 | 92.50 | gold quality |
| mononuclear cell | CL:0000842 | 92.47 | gold quality |
| leukocyte | CL:0000738 | 92.38 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 7.76 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): E2F4
miRNA regulators (miRDB)
213 targeting USP25, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-LET-7A-3P | 100.00 | 74.03 | 3932 |
| HSA-LET-7B-3P | 100.00 | 74.08 | 3913 |
| HSA-LET-7F-1-3P | 100.00 | 74.02 | 3928 |
| HSA-MIR-98-3P | 100.00 | 74.08 | 3907 |
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-340-5P | 100.00 | 72.50 | 4437 |
| HSA-MIR-4776-3P | 100.00 | 68.73 | 1340 |
| HSA-MIR-200B-3P | 100.00 | 73.31 | 2693 |
| HSA-MIR-200C-3P | 100.00 | 73.35 | 2685 |
| HSA-MIR-429 | 100.00 | 73.44 | 2698 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-3924 | 100.00 | 72.09 | 2394 |
| HSA-MIR-513A-5P | 100.00 | 69.77 | 2465 |
| HSA-MIR-196A-5P | 100.00 | 68.16 | 684 |
| HSA-MIR-196B-5P | 100.00 | 68.16 | 681 |
| HSA-MIR-6867-5P | 100.00 | 82.21 | 3464 |
| HSA-MIR-513B-5P | 99.99 | 69.96 | 2150 |
| HSA-MIR-4789-3P | 99.99 | 70.75 | 2484 |
| HSA-MIR-186-5P | 99.99 | 70.83 | 3707 |
| HSA-MIR-511-3P | 99.99 | 68.85 | 1467 |
| HSA-MIR-3185 | 99.99 | 68.12 | 1959 |
| HSA-MIR-548AW | 99.99 | 72.57 | 3559 |
| HSA-MIR-5696 | 99.98 | 72.36 | 4487 |
| HSA-MIR-12136 | 99.98 | 72.81 | 5713 |
| HSA-MIR-27A-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-27B-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-9985 | 99.98 | 72.11 | 2939 |
| HSA-LET-7F-2-3P | 99.98 | 70.98 | 2588 |
| HSA-MIR-1185-1-3P | 99.98 | 71.04 | 2593 |
Literature-anchored findings (GeneRIF, showing 35)
- characterization of alternatively spliced products and tissue-specific isoforms (PMID:11597335)
- downregulation of USP25 gene in human lung cancer (PMID:18523997)
- Seven amino acids in the SIM of USP25 are sufficient for SUMO2/3-specific binding and conjugation (PMID:18538659)
- Data show that USP25m is regulated through alternative conjugation of ubiquitin (activating) or SUMO (inhibiting) to the same lysine residue (K99), which may promote the interaction with distinct intramolecular regulatory domains. (PMID:19440361)
- the second SH2 domain of SYK physically interacts with a tyrosine-rich, C-terminal region of USP25 independently of tyrosine phosphorylation (PMID:19909739)
- Studies indicate that DUBs recycle ubiquitin by processing polyubiquitin chains to generate free ubiquitin, and can be regulated by ubiquitination or phosphorylation. (PMID:21480003)
- a model where USP25 counteracts ubiquitination of ERAD substrates by the ubiquitin ligase HRD1, rescuing them from degradation by the proteasome. (PMID:22590560)
- USP25 is a novel deubiquitinating enzyme negatively regulating virus-induced interferon-beta production. (PMID:24260525)
- These findings indicate that miR-200c exerts tumor-suppressive effects for NSCLC through the suppression of USP25 expression and suggests a new therapeutic application of miR-200c in the treatment of NSCLC. (PMID:24997798)
- Findings suggest that ubiquitin-specific protease 25 (USP25) as a VRK2 substrate that acts on TRiC deubiquitination. (PMID:25755282)
- REM Sleep Behavior Disorder patients with homozygous USP25 rs2823357 progressed to synucleinopathies faster than others. (PMID:25929833)
- We detected SNPs at USP25 with associations of genome-wide significance for Inflammatory Bowel Disease. (PMID:27693347)
- Results suggest inhibition of Usp25’s catalytic activity upon the non-covalent binding of SUMO2 to the Usp25 SUMO-interacting motif, and found that SUMO2 can competitively block the interaction between the Usp25 ubiquitin-binding region and its ubiquitin substrates. (PMID:28538147)
- USP25 directly interacted with tankyrases to promote their deubiquitination and stabilization and demonstrated that USP25 deficiency could promote the degradation of tankyrases and consequent stabilization of Axin to antagonize Wnt signaling (PMID:28619731)
- Smurf1 overexpression decreases USP25 protein turnover, and the E3 ligase enzymatic activity of Smurf1 is required for USP25 degradation. (PMID:29518389)
- Polymorphism of SREBF1 gene rs11868035 may increase susceptibility to Parkinson’s disease in the northeastern Chinese population, while variant of USP25 gene rs2823357 may have no association with susceptibility to Parkinson’s disease in northeastern Chinese. (PMID:30231795)
- the high stabilization of tankyrases in cultured cells by ectopic expression of a constitutive dimer of USP25 supports a biological relevance of this tetramerization/inhibition mechanism. (PMID:30478318)
- These findings indicate that USP25 promotes stability of HBO1 in bacterial infection thereby enhances HBO1-mediated inflammatory gene transcription. (PMID:30745998)
- We confirm oligomeric states of USP25 and USP28 in cells and show that modulating oligomerization affects substrate stabilization in accordance with in vitro activity data (PMID:30926242)
- Our work led to the identification of significant differences between USP25 and USP28 and provided the molecular basis for the development of new and highly specific anti-cancer drugs (PMID:30926243)
- USP25 downregulation by miR-27a-3p contributes to the epithelial-to-mesenchymal transition process, thereby inhibiting the migration and invasion of trophoblast cells, and these findings might provide potential biomarkers for recurrent miscarriage. (PMID:30953360)
- Deubiquitylase USP25 prevents degradation of BCR-ABL protein and ensures proliferation of Ph-positive leukemia cells. (PMID:32203161)
- USP28 and USP25 are downregulated by Vismodegib in vitro and in colorectal cancer cell lines. (PMID:32578360)
- USP25 Regulates EGFR Fate by Modulating EGF-Induced Ubiquitylation Dynamics. (PMID:33202887)
- The deubiquitinase USP25 supports colonic inflammation and bacterial infection and promotes colorectal cancer. (PMID:35122046)
- Deubiquitination of TNKS1 Regulates Wnt/beta-Catenin to Affect the Expression of USP25 to Promote the Progression of Glioma. (PMID:35450028)
- USP25 UPREGULATION BOOSTS GSDMD -MEDIATED PYROPTOSIS OF ACINAR CELLS IN ACUTE PANCREATITIS. (PMID:36155610)
- Downregulation of deubiquitinating enzyme USP25 promotes the development of allergic rhinitis by enhancing TSLP signaling in the nasal epithelium. (PMID:36177892)
- Regulation of USP25 by SP1 Associates with Amyloidogenesis. (PMID:36938736)
- USP25 inhibits renal fibrosis by regulating TGFbeta-SMAD signaling pathway in Ang II-induced hypertensive mice. (PMID:37059312)
- USP25 contributes to defective neurogenesis and cognitive impairments. (PMID:37171286)
- USP25 promotes hepatocellular carcinoma progression by interacting with TRIM21 via the Wnt/beta-catenin signaling pathway. (PMID:37439386)
- Usp25-Erlin1/2 activity limits cholesterol flux to restrict virus infection. (PMID:37683630)
- Expression of USP25 associates with fibrosis, inflammation and metabolism changes in IgG4-related disease. (PMID:38521787)
- Heterozygous variants in USP25 cause genetic generalized epilepsy. (PMID:38875478)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | usp25 | ENSDARG00000012314 |
| mus_musculus | Usp25 | ENSMUSG00000022867 |
| rattus_norvegicus | Usp25 | ENSRNOG00000001573 |
Paralogs (71): USP2 (ENSG00000036672), USP28 (ENSG00000048028), USP36 (ENSG00000055483), USP13 (ENSG00000058056), USP33 (ENSG00000077254), USP40 (ENSG00000085982), USP48 (ENSG00000090686), USP14 (ENSG00000101557), USP11 (ENSG00000102226), USP10 (ENSG00000103194), USP31 (ENSG00000103404), USP42 (ENSG00000106346), USP5 (ENSG00000111667), USP4 (ENSG00000114316), USP9Y (ENSG00000114374), USP34 (ENSG00000115464), USP35 (ENSG00000118369), USP45 (ENSG00000123552), USP22 (ENSG00000124422), USP9X (ENSG00000124486), USP6 (ENSG00000129204), USP29 (ENSG00000131864), USP26 (ENSG00000134588), USP30 (ENSG00000135093), USP15 (ENSG00000135655), USP37 (ENSG00000135913), USP44 (ENSG00000136014), USP20 (ENSG00000136878), USP8 (ENSG00000138592), USP3 (ENSG00000140455), USP21 (ENSG00000143258), USP43 (ENSG00000154914), USP16 (ENSG00000156256), USP24 (ENSG00000162402), USP1 (ENSG00000162607), USP49 (ENSG00000164663), USP38 (ENSG00000170185), USP50 (ENSG00000170236), USP47 (ENSG00000170242), USP32 (ENSG00000170832)
Protein
Protein identifiers
Ubiquitin carboxyl-terminal hydrolase 25 — Q9UHP3 (reviewed: Q9UHP3)
Alternative names: Deubiquitinating enzyme 25, USP on chromosome 21, Ubiquitin thioesterase 25, Ubiquitin-specific-processing protease 25
All UniProt accessions (4): Q9UHP3, H7C1T8, H7C253, Q96B65
UniProt curated annotations — full annotation on UniProt →
Function. Deubiquitinating enzyme that hydrolyzes ubiquitin moieties conjugated to substrates and thus, functions in various biological processes including inflammation and immune response. Modulates the Wnt/beta-catenin pathway by deubiquitinating and stabilizing tankyrases TNKS1 and TNKS2. Regulates KEAP1-NRF2 axis in the defense against oxidative assaults by deubiquitinating KEAP1 and protecting it from degradation leading to degradation of the NRF2 transcription factor that is responsible for mounting an anti-oxidation gene expression program. Positively regulates RNA virus-induced innate signaling by interacting with and deubiquitinating ERLIN1 and ERLIN2. In turn, restricts virus production by regulating cholesterol biosynthetic flux. Acts as a negative regulator of interleukin-17-mediated signaling and inflammation through the removal of ‘Lys-63’-linked ubiquitination of TRAF5 and TRAF6. Prevents the ubiquitination and degradation of TRAF3 to reduce the phosphorylation levels of JNK and P38, the secretion of IL-1B and to induce endotoxin tolerance. The muscle-specific isoform (USP25m) may have a role in the regulation of muscular differentiation and function.
Subunit / interactions. Homotetramer, inhibited form. Homodimer, active form. Interacts with ACTA1 (via its C-terminus); the interaction occurs for all isoforms but is strongest for isoform USP25m in muscle differentiating cells. Interacts (isoform USP25m only) with MYBPC1; the interaction prevents proteasomal degradation of MYBPC1. Interacts (isoform USP25m only) with FLNC (via filament repeats 17-18, 20-21 and 24). Interacts with GAPDH. Interacts with SUMO3; the interaction sumoylates efficiently USP25. Interacts with SUMO2; the interaction sumoylates efficiently USP25. Interacts with SUMO1; the interaction only weakly sumoylates USP25. Interacts with SYK; phosphorylates USP25 and regulates USP25 intracellular levels.
Subcellular location. Cytoplasm Cytoplasm. Nucleus.
Tissue specificity. Isoform USP25a is found in most adult and fetal tissues; expression is moderately high in testis, pancreas, kidney, skeletal muscle, liver, lung, placenta, heart, but very low in peripheral blood, colon, small intestine, ovary, prostate, thymus and spleen. Expressed in the brain, with high levels in the cerebral cortex. Isoform USP25b is found in all tissues except heart and skeletal muscle. Isoform USP25m is heart and skeletal muscle specific.
Post-translational modifications. Acetylated. Sumoylation impairs binding to and hydrolysis of ubiquitin chains. Sumoylated preferentially with SUMO2 or SUMO3. Desumoylated by SENP1. Polyubiquitinated by SMURF1 by promoting the ‘Lys-48’-linkage leading to proteasomal degradation. Preferentially monoubiquitinated but can also be polyubiquitinated. Autodeubiquitinated. Ubiquitination activates the enzymatic activity either by preventing sumoylation or by allowing novel interactions. Phosphorylation in the C-terminal by SYK regulates USP25 cellular levels.
Disease relevance. Epilepsy, idiopathic generalized 19 (EIG19) [MIM:621064] An autosomal dominant form of idiopathic generalized epilepsy, a disorder characterized by recurring generalized seizures in the absence of detectable brain lesions and/or metabolic abnormalities. Generalized seizures arise diffusely and simultaneously from both hemispheres of the brain. Seizure types include juvenile myoclonic seizures, absence seizures, and generalized tonic-clonic seizures. EIG19 is characterized by onset of variable types of seizures in the first two decades of life. Disease susceptibility is associated with variants affecting the gene represented in this entry.
Induction. The muscle-specific isoform (USP25m) is up-regulated during myocyte differentiation. Levels increase up to 100-fold towards completion of differentiation.
Similarity. Belongs to the peptidase C19 family.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9UHP3-2 | USP25a | yes |
| Q9UHP3-1 | USP25b | |
| Q9UHP3-3 | USP25m, Muscle-specific isoform |
RefSeq proteins (9): NP_001269970, NP_001269971, NP_001339489, NP_001339490, NP_001375228, NP_001375229, NP_001375230, NP_001375231, NP_037528 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001394 | Peptidase_C19_UCH | Domain |
| IPR003903 | UIM_dom | Conserved_site |
| IPR009060 | UBA-like_sf | Homologous_superfamily |
| IPR018200 | USP_CS | Conserved_site |
| IPR028889 | USP | Domain |
| IPR038765 | Papain-like_cys_pep_sf | Homologous_superfamily |
| IPR050164 | Peptidase_C19 | Family |
| IPR054108 | USP25/28_UIM | Conserved_site |
| IPR054109 | UBA_8 | Domain |
Pfam: PF00443, PF21909, PF22566
UniProt features (106 total): helix 39, strand 22, turn 9, mutagenesis site 8, sequence variant 5, domain 4, active site 3, region of interest 3, compositionally biased region 2, modified residue 2, cross-link 2, splice variant 2, coiled-coil region 2, chain 1, short sequence motif 1, sequence conflict 1
Structure
Experimental structures (PDB)
7 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 5GP7 | X-RAY DIFFRACTION | 1.5 |
| 6HEM | X-RAY DIFFRACTION | 1.72 |
| 6H4K | X-RAY DIFFRACTION | 2.05 |
| 6HEL | X-RAY DIFFRACTION | 2.94 |
| 6H4J | X-RAY DIFFRACTION | 3.07 |
| 5O71 | X-RAY DIFFRACTION | 3.28 |
| 2MUX | SOLUTION NMR |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9UHP3-F1 | 78.12 | 0.38 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (3): 178; 599; 607
Post-translational modifications (4): 85, 740, 99, 99
Mutagenesis-validated functional residues (8):
| Position | Phenotype |
|---|---|
| 91 | no interaction with sumo3; when associated with a-92. |
| 92 | no interaction with sumo3; when associated with a-91. |
| 99 | abolishes sumoylation. decreased enzymatic activity. |
| 178 | abrogates deubiquitinating activity. no effect on homo- or oligomerization. |
| 740 | no effect on interaction with syk. |
| 878 | no effect on interaction with syk. |
| 880 | no effect on interaction with syk. |
| 883 | no effect on interaction with syk. |
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-5689880 | Ub-specific processing proteases |
MSigDB gene sets: 434 (showing top):
WENDT_COHESIN_TARGETS_UP, GOBP_NEGATIVE_REGULATION_OF_RESPONSE_TO_ENDOPLASMIC_RETICULUM_STRESS, MODULE_97, GOBP_RESPONSE_TO_NITROGEN_COMPOUND, GOBP_NEGATIVE_REGULATION_OF_PROTEOLYSIS, TGCTGCT_MIR15A_MIR16_MIR15B_MIR195_MIR424_MIR497, GOBP_RESPONSE_TO_PEPTIDE, GOBP_RESPONSE_TO_ENDOPLASMIC_RETICULUM_STRESS, GRAESSMANN_APOPTOSIS_BY_SERUM_DEPRIVATION_UP, GRAESSMANN_RESPONSE_TO_MC_AND_SERUM_DEPRIVATION_UP, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_DN, GOBP_MACROMOLECULE_CATABOLIC_PROCESS, IVANOVA_HEMATOPOIESIS_MATURE_CELL, HUMMERICH_BENIGN_SKIN_TUMOR_UP, MODULE_182
GO Biological Process (13): proteolysis (GO:0006508), protein deubiquitination (GO:0016579), regulation of protein stability (GO:0031647), protein modification process (GO:0036211), protein K63-linked deubiquitination (GO:0070536), protein K48-linked deubiquitination (GO:0071108), negative regulation of response to oxidative stress (GO:1902883), negative regulation of interleukin-17-mediated signaling pathway (GO:1903882), negative regulation of ERAD pathway (GO:1904293), cellular response to oxidative stress (GO:0034599), interleukin-17A-mediated signaling pathway (GO:0038173), proteasome-mediated ubiquitin-dependent protein catabolic process (GO:0043161), protein K48-linked ubiquitination (GO:0070936)
GO Molecular Function (11): cysteine-type deubiquitinase activity (GO:0004843), peptidase activity (GO:0008233), ubiquitin-like protein peptidase activity (GO:0019783), ubiquitin protein ligase binding (GO:0031625), SUMO binding (GO:0032183), ubiquitin binding (GO:0043130), ATPase binding (GO:0051117), deubiquitinase activity (GO:0101005), protein binding (GO:0005515), cysteine-type peptidase activity (GO:0008234), hydrolase activity (GO:0016787)
GO Cellular Component (4): nucleus (GO:0005634), cytoplasm (GO:0005737), endoplasmic reticulum (GO:0005783), cytosol (GO:0005829)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Deubiquitination | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| protein metabolic process | 2 |
| protein deubiquitination | 2 |
| response to oxidative stress | 2 |
| peptidase activity | 2 |
| ubiquitin-like protein binding | 2 |
| intracellular membrane-bounded organelle | 2 |
| cellular anatomical structure | 2 |
| cytoplasm | 2 |
| cysteine-type deubiquitinase activity | 1 |
| protein modification by small protein removal | 1 |
| regulation of biological quality | 1 |
| macromolecule modification | 1 |
| negative regulation of response to stimulus | 1 |
| regulation of response to oxidative stress | 1 |
| negative regulation of cytokine-mediated signaling pathway | 1 |
| interleukin-17-mediated signaling pathway | 1 |
| regulation of interleukin-17-mediated signaling pathway | 1 |
| ERAD pathway | 1 |
| negative regulation of proteasomal protein catabolic process | 1 |
| negative regulation of response to endoplasmic reticulum stress | 1 |
| regulation of ERAD pathway | 1 |
| cellular response to chemical stress | 1 |
| cytokine-mediated signaling pathway | 1 |
| ubiquitin-dependent protein catabolic process | 1 |
| proteasomal protein catabolic process | 1 |
| protein polyubiquitination | 1 |
| cysteine-type peptidase activity | 1 |
| deubiquitinase activity | 1 |
| hydrolase activity | 1 |
| catalytic activity, acting on a protein | 1 |
| ubiquitin-like protein ligase binding | 1 |
| enzyme binding | 1 |
| ubiquitin-like protein peptidase activity | 1 |
| binding | 1 |
| catalytic activity | 1 |
| intracellular anatomical structure | 1 |
| endomembrane system | 1 |
Protein interactions and networks
STRING
1864 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| USP25 | USP13 | Q92995 | 775 |
| USP25 | SUMO1 | P55856 | 728 |
| USP25 | USP5 | P45974 | 722 |
| USP25 | USP2 | O75604 | 686 |
| USP25 | USP8 | P40818 | 682 |
| USP25 | YOD1 | Q5VVQ6 | 681 |
| USP25 | ZUP1 | Q96AP4 | 677 |
| USP25 | USP1 | O94782 | 671 |
| USP25 | USP7 | Q93009 | 668 |
| USP25 | ATXN3 | P54252 | 665 |
| USP25 | USP14 | P54578 | 647 |
| USP25 | SUMO2 | P55855 | 639 |
| USP25 | USP39 | Q53GS9 | 632 |
| USP25 | USP15 | Q9Y4E8 | 626 |
| USP25 | USP4 | Q13107 | 624 |
IntAct
112 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| RAD23A | USP25 | psi-mi:“MI:0915”(physical association) | 0.890 |
| USP25 | RAD23A | psi-mi:“MI:0915”(physical association) | 0.890 |
| RAD23B | USP25 | psi-mi:“MI:0915”(physical association) | 0.850 |
| SYK | USP25 | psi-mi:“MI:0915”(physical association) | 0.830 |
| USP25 | SYK | psi-mi:“MI:0915”(physical association) | 0.830 |
| GDI1 | RAB4A | psi-mi:“MI:0914”(association) | 0.820 |
| rep | USP25 | psi-mi:“MI:0915”(physical association) | 0.760 |
| rep | USP25 | psi-mi:“MI:2364”(proximity) | 0.760 |
| USP25 | SUMO2 | psi-mi:“MI:0915”(physical association) | 0.720 |
| SUMO2 | USP25 | psi-mi:“MI:0915”(physical association) | 0.720 |
| DYNLL2 | BLTP3B | psi-mi:“MI:0914”(association) | 0.640 |
| TNKS2 | USP25 | psi-mi:“MI:0407”(direct interaction) | 0.590 |
| MAGEB4 | USP25 | psi-mi:“MI:0915”(physical association) | 0.560 |
| USP25 | ZNF426 | psi-mi:“MI:0915”(physical association) | 0.560 |
BioGRID (227): USP25 (Reconstituted Complex), USP25 (Biochemical Activity), UBC (Biochemical Activity), UBC (Reconstituted Complex), USP25 (Two-hybrid), USP25 (Two-hybrid), USP25 (Two-hybrid), USP25 (Two-hybrid), ZNF426 (Two-hybrid), USP25 (Affinity Capture-MS), APP (Affinity Capture-Western), SYK (Two-hybrid), USP25 (Affinity Capture-MS), KCTD13 (Affinity Capture-MS), TNFAIP1 (Affinity Capture-MS)
ESM2 similar proteins: A1CHL6, A1CIL1, A1CW53, A1CX69, A2Q9N1, A2QIL5, A6RYB8, A6S9E2, A7EWF5, A7F0W2, A7KAL2, B0Y4P5, B8NSV5, C4B4E5, G2X3G1, I1RNG8, I1S8Q3, J4W0G2, M2T5U2, O14019, P0CAQ1, P0CO28, P0CO29, P0CQ10, P0CQ11, P43638, P57080, Q0CLX3, Q0CT11, Q0UY20, Q1DN93, Q2H6X2, Q2H9Y1, Q2UGZ7, Q2UUG8, Q3ZDQ4, Q4PBL3, Q4WHB7, Q4WPF2, Q4WQI1
Diamond homologs: A2BGT0, A4QNN3, D3ZPG5, Q3UN04, Q70CQ3, Q7JKC3, Q9UHP3, A0JM59, A5PMR2, B1AY13, B1WBD7, F8VPZ3, P57080, P70398, Q5ZM45, Q84WU2, Q8BW70, Q8NFA0, Q93008, Q9FPT1, Q9UPU5, Q9UTT1, A0A0R4IB93, A6QNM7, D3ZJ96, Q28CN3, Q5I043, Q5REG5, Q5ZID5, Q86UV5, Q8BWR4, Q8NB14, Q8R5K2, Q8TEY7, Q96RU2, Q9P3U0, Q9WTV6, Q9P2H5, A5PN09, A7Z056
SIGNOR signaling
5 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| VRK2 | “down-regulates activity” | USP25 | phosphorylation |
| USP25 | “up-regulates quantity by stabilization” | TRiC | deubiquitination |
| SYK | “down-regulates quantity” | USP25 | phosphorylation |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 80 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Formation of Incision Complex in GG-NER | 6 | 28.2× | 3e-05 |
| Neddylation | 8 | 7.0× | 3e-03 |
| Ub-specific processing proteases | 7 | 6.9× | 5e-03 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| protein autoubiquitination | 5 | 17.0× | 2e-03 |
| protein polyubiquitination | 8 | 13.4× | 1e-04 |
| proteasome-mediated ubiquitin-dependent protein catabolic process | 8 | 6.0× | 6e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
245 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 190 |
| Likely benign | 9 |
| Benign | 1 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
5457 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 21:15730436:AAGGT:A | donor_loss | 1.0000 |
| 21:15730437:AGGT:A | donor_loss | 1.0000 |
| 21:15730438:GGTG:G | donor_loss | 1.0000 |
| 21:15762886:TCTA:T | acceptor_loss | 1.0000 |
| 21:15762887:CTA:C | acceptor_loss | 1.0000 |
| 21:15762888:TA:T | acceptor_loss | 1.0000 |
| 21:15762889:A:AG | acceptor_gain | 1.0000 |
| 21:15762889:AG:A | acceptor_loss | 1.0000 |
| 21:15762890:G:GT | acceptor_gain | 1.0000 |
| 21:15762890:GC:G | acceptor_gain | 1.0000 |
| 21:15762890:GCA:G | acceptor_gain | 1.0000 |
| 21:15762890:GCACC:G | acceptor_gain | 1.0000 |
| 21:15762964:TGAAG:T | donor_loss | 1.0000 |
| 21:15762965:GAAGG:G | donor_loss | 1.0000 |
| 21:15762967:AGGT:A | donor_loss | 1.0000 |
| 21:15762970:T:G | donor_loss | 1.0000 |
| 21:15765985:T:TA | acceptor_gain | 1.0000 |
| 21:15765989:A:AG | acceptor_gain | 1.0000 |
| 21:15765989:ATTT:A | acceptor_gain | 1.0000 |
| 21:15765992:T:TA | acceptor_gain | 1.0000 |
| 21:15765992:TGAA:T | acceptor_loss | 1.0000 |
| 21:15765993:GAA:G | acceptor_loss | 1.0000 |
| 21:15765995:A:AG | acceptor_gain | 1.0000 |
| 21:15765995:A:T | acceptor_loss | 1.0000 |
| 21:15765996:G:GC | acceptor_gain | 1.0000 |
| 21:15765996:GGATA:G | acceptor_gain | 1.0000 |
| 21:15766137:TACAA:T | donor_gain | 1.0000 |
| 21:15766138:ACAA:A | donor_gain | 1.0000 |
| 21:15766139:CAA:C | donor_gain | 1.0000 |
| 21:15766140:AA:A | donor_gain | 1.0000 |
AlphaMissense
7441 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 21:15777952:T:A | I106N | 1.000 |
| 21:15777952:T:G | I106S | 1.000 |
| 21:15791628:T:A | N173K | 1.000 |
| 21:15791628:T:G | N173K | 1.000 |
| 21:15791641:T:C | C178R | 1.000 |
| 21:15791642:G:A | C178Y | 1.000 |
| 21:15791643:T:G | C178W | 1.000 |
| 21:15791644:T:A | W179R | 1.000 |
| 21:15791644:T:C | W179R | 1.000 |
| 21:15791646:G:C | W179C | 1.000 |
| 21:15791646:G:T | W179C | 1.000 |
| 21:15791647:T:C | F180L | 1.000 |
| 21:15791648:T:C | F180S | 1.000 |
| 21:15791649:T:A | F180L | 1.000 |
| 21:15791649:T:G | F180L | 1.000 |
| 21:15791650:A:C | S181R | 1.000 |
| 21:15791652:T:A | S181R | 1.000 |
| 21:15791652:T:G | S181R | 1.000 |
| 21:15791654:C:A | A182D | 1.000 |
| 21:15799779:T:C | F193S | 1.000 |
| 21:15799791:T:A | V197D | 1.000 |
| 21:15805152:T:C | L225P | 1.000 |
| 21:15805203:C:A | P242Q | 1.000 |
| 21:15805224:T:C | L249P | 1.000 |
| 21:15808812:G:C | D262H | 1.000 |
| 21:15808813:A:C | D262A | 1.000 |
| 21:15808813:A:T | D262V | 1.000 |
| 21:15808818:A:C | S264R | 1.000 |
| 21:15808820:T:A | S264R | 1.000 |
| 21:15808820:T:G | S264R | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000019297 (21:15739723 C>A), RS1000032276 (21:15867192 T>G), RS1000042006 (21:15825718 T>C), RS1000046758 (21:15784496 C>T), RS1000057539 (21:15866945 T>C), RS1000073859 (21:15787846 A>G), RS1000076181 (21:15750122 A>T), RS1000083671 (21:15744478 A>C,G), RS1000088094 (21:15809291 G>A), RS1000090532 (21:15873336 G>T), RS1000100946 (21:15831485 G>A), RS1000121605 (21:15873594 C>G,T), RS1000122395 (21:15729864 G>A), RS1000139754 (21:15858547 ACT>A), RS1000158678 (21:15766826 T>C)
Disease associations
OMIM: gene MIM:604736 | disease phenotypes: MIM:621064, MIM:600669
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| epilepsy, idiopathic generalized, susceptibility to, 19 | Moderate | Autosomal dominant |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| epilepsy | Disputed | AD |
Mondo (2): epilepsy, idiopathic generalized, susceptibility to, 19 (MONDO:0976128), idiopathic generalized epilepsy (MONDO:0005579)
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
9 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000320_11 | Panic disorder | 9.000000e-06 |
| GCST001126_11 | Parkinson’s disease | 6.000000e-07 |
| GCST003872_17 | QRS complex (12-leadsum) | 4.000000e-09 |
| GCST006291_42 | Spherical equivalent or myopia (age of diagnosis) | 5.000000e-12 |
| GCST008485_6 | Crohn’s disease | 2.000000e-07 |
| GCST009066_31 | Mosaic loss of chromosome Y (Y chromosome dosage) | 1.000000e-08 |
| GCST009391_2007 | Metabolite levels | 8.000000e-06 |
| GCST90011900_14 | Serum alkaline phosphatase levels | 5.000000e-09 |
| GCST90026412_2 | Severe autoimmune type 2 diabetes | 1.000000e-06 |
EFO canonical traits (6, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0005054 | QRS complex |
| EFO:0007742 | QRS amplitude |
| EFO:0004847 | age at onset |
| EFO:0007783 | mosaic loss of chromosome Y measurement |
| EFO:0010347 | cholesteryl ester 20:3 measurement |
| EFO:0004533 | alkaline phosphatase measurement |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| C562694 | Epilepsy, Idiopathic Generalized (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL4295975 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
369 potent at pChembl≥5 of 383 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 6.70 | IC50 | 200 | nM | CHEMBL4174196 |
| 6.70 | IC50 | 200 | nM | CHEMBL4300392 |
| 6.70 | IC50 | 200 | nM | CHEMBL4443504 |
| 6.70 | IC50 | 200 | nM | CHEMBL4584152 |
| 6.70 | IC50 | 200 | nM | CHEMBL4451295 |
| 6.70 | IC50 | 200 | nM | CHEMBL4462420 |
| 6.70 | IC50 | 200 | nM | CHEMBL4459980 |
| 6.70 | IC50 | 200 | nM | CHEMBL4585832 |
| 6.70 | IC50 | 200 | nM | CHEMBL4533281 |
| 6.70 | IC50 | 200 | nM | CHEMBL4593462 |
| 6.70 | IC50 | 200 | nM | CHEMBL4590597 |
| 6.70 | IC50 | 200 | nM | CHEMBL4527267 |
| 6.70 | IC50 | 200 | nM | CHEMBL4580403 |
| 6.70 | IC50 | 200 | nM | CHEMBL4556612 |
| 6.70 | IC50 | 200 | nM | CHEMBL4590745 |
| 6.70 | IC50 | 200 | nM | CHEMBL4557308 |
| 6.70 | IC50 | 200 | nM | CHEMBL4534946 |
| 6.70 | IC50 | 200 | nM | CHEMBL4541247 |
| 6.70 | IC50 | 200 | nM | CHEMBL4521756 |
| 6.70 | IC50 | 200 | nM | CHEMBL4588664 |
| 6.70 | IC50 | 200 | nM | CHEMBL4583154 |
| 6.70 | IC50 | 200 | nM | CHEMBL4553911 |
| 6.70 | IC50 | 200 | nM | CHEMBL4530046 |
| 6.70 | IC50 | 200 | nM | CHEMBL4574201 |
| 6.70 | IC50 | 200 | nM | CHEMBL4581055 |
| 6.70 | IC50 | 200 | nM | CHEMBL4548150 |
| 6.70 | IC50 | 200 | nM | CHEMBL4552439 |
| 6.70 | IC50 | 200 | nM | CHEMBL4539489 |
| 6.70 | IC50 | 200 | nM | CHEMBL4575333 |
| 6.70 | IC50 | 200 | nM | CHEMBL4548452 |
| 6.70 | IC50 | 200 | nM | CHEMBL4574312 |
| 6.70 | IC50 | 200 | nM | CHEMBL4514285 |
| 6.70 | IC50 | 200 | nM | CHEMBL4551619 |
| 6.70 | IC50 | 200 | nM | CHEMBL4542243 |
| 6.70 | IC50 | 200 | nM | CHEMBL4575704 |
| 6.70 | IC50 | 200 | nM | CHEMBL4562757 |
| 6.70 | IC50 | 200 | nM | CHEMBL4572877 |
| 6.70 | IC50 | 200 | nM | CHEMBL4483621 |
| 6.70 | IC50 | 200 | nM | CHEMBL4535435 |
| 6.70 | IC50 | 200 | nM | CHEMBL4568633 |
| 6.70 | IC50 | 200 | nM | CHEMBL4538680 |
| 6.70 | IC50 | 200 | nM | CHEMBL4519889 |
| 6.70 | IC50 | 200 | nM | CHEMBL4537585 |
| 6.70 | IC50 | 200 | nM | CHEMBL4569303 |
| 6.70 | IC50 | 200 | nM | CHEMBL4585155 |
| 6.70 | IC50 | 200 | nM | CHEMBL4539113 |
| 6.70 | IC50 | 200 | nM | CHEMBL4556121 |
| 6.70 | IC50 | 200 | nM | CHEMBL4565666 |
| 6.70 | IC50 | 200 | nM | CHEMBL4526977 |
| 6.70 | IC50 | 200 | nM | CHEMBL4539562 |
PubChem BioAssay actives
7 with measured affinity, of 34 total; 7 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 7-amino-N-[2-[4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-2,5-difluorophenyl]ethyl]-3-methylthieno[2,3-b]pyrazine-6-carboxamide;hydrochloride | 1504900: Inhibition of recombinant human His6-tagged USP25 expressed in baculovirus infected Sf21 insect cells using Ub-Rh110 as substrate pretreated for 30 mins followed by substrate addition measured after 45 mins by fluorescence assay | ic50 | 0.2000 | uM |
| 7-amino-N-[2-[4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-3-fluorophenyl]ethyl]-3-methylthieno[2,3-b]pyrazine-6-carboxamide;hydrochloride | 1504900: Inhibition of recombinant human His6-tagged USP25 expressed in baculovirus infected Sf21 insect cells using Ub-Rh110 as substrate pretreated for 30 mins followed by substrate addition measured after 45 mins by fluorescence assay | ic50 | 0.2000 | uM |
| 2-[[5-bromo-2-[[4-fluoro-3-(trifluoromethyl)phenyl]methoxy]phenyl]methylamino]ethanol | 1930832: Inhibition of USP25 (unknown origin) using Ub-Rho100 as substrate by calorimetric analysis | ic50 | 0.6200 | uM |
| 2-[[5-bromo-2-[[3-(trifluoromethoxy)phenyl]methoxy]phenyl]methylamino]ethanol | 1930832: Inhibition of USP25 (unknown origin) using Ub-Rho100 as substrate by calorimetric analysis | ic50 | 0.8800 | uM |
| 7-amino-N-[(2S)-2-[4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-3-fluorophenyl]propyl]-3-methylthieno[2,3-b]pyrazine-6-carboxamide | 1504900: Inhibition of recombinant human His6-tagged USP25 expressed in baculovirus infected Sf21 insect cells using Ub-Rh110 as substrate pretreated for 30 mins followed by substrate addition measured after 45 mins by fluorescence assay | ic50 | 2.0000 | uM |
| 7-amino-N-[(2R)-2-[4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-3-fluorophenyl]propyl]-3-methylthieno[2,3-b]pyrazine-6-carboxamide | 1504900: Inhibition of recombinant human His6-tagged USP25 expressed in baculovirus infected Sf21 insect cells using Ub-Rh110 as substrate pretreated for 30 mins followed by substrate addition measured after 45 mins by fluorescence assay | ic50 | 2.0000 | uM |
| 7-amino-N-[2-(2,5-difluoro-4-piperazin-1-ylphenyl)ethyl]-3-methylthieno[2,3-b]pyrazine-6-carboxamide | 1504900: Inhibition of recombinant human His6-tagged USP25 expressed in baculovirus infected Sf21 insect cells using Ub-Rh110 as substrate pretreated for 30 mins followed by substrate addition measured after 45 mins by fluorescence assay | ic50 | 2.0000 | uM |
CTD chemical–gene interactions
43 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, increases expression, affects expression | 7 |
| trichostatin A | affects cotreatment, increases expression | 3 |
| sodium arsenite | decreases expression, increases abundance | 3 |
| bisphenol A | decreases expression, decreases methylation | 2 |
| potassium chromate(VI) | decreases expression, affects cotreatment | 2 |
| entinostat | increases expression, affects cotreatment | 2 |
| Phenylmercuric Acetate | affects cotreatment, increases expression | 2 |
| Tretinoin | increases expression | 2 |
| Cyclosporine | increases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| dicrotophos | decreases expression | 1 |
| geldanamycin | increases expression | 1 |
| methylmercuric chloride | decreases expression, increases expression | 1 |
| alpha-pinene | increases oxidation, increases abundance, affects cotreatment | 1 |
| arsenite | affects binding, decreases reaction | 1 |
| butyraldehyde | decreases expression | 1 |
| methacrylaldehyde | increases abundance, affects cotreatment, increases oxidation | 1 |
| epigallocatechin gallate | affects cotreatment, decreases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| chromium hexavalent ion | decreases expression | 1 |
| perfluorooctane sulfonic acid | decreases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| dorsomorphin | increases expression, affects cotreatment | 1 |
| jinfukang | decreases expression | 1 |
| (+)-JQ1 compound | increases expression | 1 |
| Sunitinib | increases expression | 1 |
| Acetaminophen | increases expression | 1 |
| Acrolein | affects cotreatment, increases oxidation, increases abundance | 1 |
| Air Pollutants | affects cotreatment, increases abundance, increases oxidation | 1 |
ChEMBL screening assays
19 unique, capped per target: 19 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL4136598 | Binding | Inhibition of recombinant human His6-tagged USP25 expressed in baculovirus infected Sf21 insect cells using Ub-Rh110 as substrate pretreated for 30 mins followed by substrate addition measured after 45 mins by fluorescence assay | Ubiquitin-Specific Inhibitors for the Treatment of Cancers, Autoimmune, and Infectious Diseases. — ACS Med Chem Lett |
Cellosaurus cell lines
5 cell lines: 4 cancer cell line, 1 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_D6BF | HyCyte HEK293 KO-hUSP25 | Transformed cell line | Female |
| CVCL_D8Y0 | Ubigene HCT 116 USP25 KO | Cancer cell line | Male |
| CVCL_DX67 | HAP1 USP25 (-) USP28 (-) 1 | Cancer cell line | Male |
| CVCL_DX68 | HAP1 USP25 (-) USP28 (-) 2 | Cancer cell line | Male |
| CVCL_TW79 | HAP1 USP25 (-) | Cancer cell line | Male |
Clinical trials (associated diseases)
21 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT03590197 | PHASE4 | COMPLETED | Effect of Melatonin on Seizure Outcome, Neuronal Damage and Quality of Life in Patients With Generalized Epilepsy |
| NCT03940326 | PHASE4 | COMPLETED | Levetiracetam Versus Valproate in Idiopathic Generalized Tonic-clonic Seizures |
| NCT00150735 | PHASE3 | COMPLETED | Monotherapy With Levetiracetam in Newly Diagnosed Patients Suffering From Epilepsy |
| NCT00150748 | PHASE3 | COMPLETED | Long Term Follow up Treatment With Levetiracetam in Subjects of 4 Years and Older With Generalized Epilepsy |
| NCT03678753 | PHASE3 | COMPLETED | Randomized, Double-Blind Study to Evaluate Efficacy and Safety of Cenobamate Adjunctive Therapy in PGTC Seizures |
| NCT05147571 | PHASE3 | ACTIVE_NOT_RECRUITING | RNS System NAUTILUS Study |
| NCT06908356 | PHASE2 | RECRUITING | An Open Label Trial to Evaluate the Efficacy and Safety of PRAX-628 in Adults With Focal Onset or Tonic-Clonic Seizures |
| NCT06425159 | PHASE2/PHASE3 | TERMINATED | A Study to Determine if BHV-7000 is Effective and Safe in Adults With Idiopathic Generalized Epilepsy With Generalized Tonic-clonic Seizures |
| NCT00001325 | Not specified | COMPLETED | Metabolic Abnormalities in Children With Epilepsy |
| NCT00916903 | Not specified | TERMINATED | Genetic Disease Gene Identification |
| NCT01311440 | Not specified | COMPLETED | Modified Atkins Diet Treatment for Adults With Drug-resistant Epilepsy |
| NCT01432821 | Not specified | COMPLETED | Blinking and Yawning in Epilepsy: The Role of Dopamine |
| NCT03368469 | Not specified | WITHDRAWN | Transcranial Direct Current Stimulation (tDCS) in Children and Adolescents With Epilepsy and Depression |
| NCT03457961 | Not specified | UNKNOWN | Post-market Study of AMPA Receptor Antagonists for Epilepsy Patients in Hong Kong |
| NCT03955432 | Not specified | TERMINATED | Long-term Cardiac Monitoring in Epilepsy |
| NCT04252846 | Not specified | COMPLETED | A Study to Investigate Dosage, Effectiveness, and Safety of Perampanel When Used as First Add-on Therapy in Participants >=12 Years With Partial Onset Seizures With or Without Secondary Generalization or With Primary Generalized Tonic-Clonic Seizures Associated With Idiopathic Generalized Epilepsy |
| NCT04965571 | Not specified | COMPLETED | Clinical Features and Outcome of Wilson’s Disease With Generalized Epilepsy in Chinese Patients |
| NCT05374928 | Not specified | ACTIVE_NOT_RECRUITING | Human Epilepsy Project 3 |
| NCT05530109 | Not specified | TERMINATED | Study of Attentional Disorders in Patients Suffering From Idiopathic Generalized Epilepsy. |
| NCT06388174 | Not specified | RECRUITING | Idiopathic Generalized Epilepsy Syndromes |
| NCT06797791 | Not specified | COMPLETED | Assessment of Multifocal Continuous Theta Burst Transcranial Magnetic Stimulation (cTBS) Effects in Generalized Epilepsy Patients. |
Related Atlas pages
- Associated diseases: epilepsy, idiopathic generalized, susceptibility to, 19, epilepsy
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): epilepsy, idiopathic generalized, susceptibility to, 19, idiopathic generalized epilepsy, panic disorder, Parkinson disease, refractive error