USP38-DT

Summary

USP38-DT (USP38 divergent transcript, HGNC:55554) is a long non-coding RNA gene on chromosome 4q31.21.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55554
Approved symbol	USP38-DT
Name	USP38 divergent transcript
Location	4q31.21
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000250326
Ensembl biotype	lncRNA
Entrez	105377623
RNAcentral	URS0002A51824 — lncRNA, 2197 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 15 — 15 lncRNA

ENST00000507486, ENST00000507826, ENST00000657857, ENST00000725272, ENST00000733058, ENST00000733059, ENST00000733060, ENST00000733061, ENST00000733062, ENST00000733063, ENST00000733064, ENST00000733065, ENST00000733066, ENST00000733067, ENST00000733068

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000507486 — 2 exons

Exon	Start	End
ENSE00002030587	143184508	143184829
ENSE00002038063	143177660	143178096

Expression profiles

Bgee: expression breadth ubiquitous, 134 present calls, max score 95.77.

Top tissues by expression

136 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
thymus	UBERON:0002370	95.77	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.20	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	76.76	gold quality
sural nerve	UBERON:0015488	76.41	gold quality
corpus callosum	UBERON:0002336	76.27	gold quality
calcaneal tendon	UBERON:0003701	71.83	gold quality
ventricular zone	UBERON:0003053	71.65	gold quality
quadriceps femoris	UBERON:0001377	69.42	gold quality
right uterine tube	UBERON:0001302	69.25	gold quality
lymph node	UBERON:0000029	68.28	gold quality
cerebellar vermis	UBERON:0004720	67.75	gold quality
left ovary	UBERON:0002119	67.13	gold quality
colonic epithelium	UBERON:0000397	67.08	silver quality
islet of Langerhans	UBERON:0000006	66.95	gold quality
ganglionic eminence	UBERON:0004023	66.81	gold quality
ovary	UBERON:0000992	66.77	gold quality
cortical plate	UBERON:0005343	66.57	gold quality
skeletal muscle tissue	UBERON:0001134	66.44	gold quality
pancreas	UBERON:0001264	65.06	gold quality
fallopian tube	UBERON:0003889	65.01	gold quality
muscle of leg	UBERON:0001383	64.84	gold quality
tibial nerve	UBERON:0001323	64.74	gold quality
gastrocnemius	UBERON:0001388	64.72	gold quality
right ovary	UBERON:0002118	64.45	gold quality
spinal cord	UBERON:0002240	64.11	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	64.07	gold quality
body of pancreas	UBERON:0001150	63.99	gold quality
vermiform appendix	UBERON:0001154	63.73	gold quality
bone marrow cell	CL:0002092	63.65	silver quality
tibial artery	UBERON:0007610	63.29	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.70

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.