VAMP1-AS1

Summary

VAMP1-AS1 (VAMP1 antisense RNA 1, HGNC:56361) is a long non-coding RNA gene on chromosome 12p13.31.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56361
Approved symbol	VAMP1-AS1
Name	VAMP1 antisense RNA 1
Location	12p13.31
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000276718
Ensembl biotype	lncRNA
Entrez	127379716
RNAcentral	URS0000783E16 — lncRNA, 599 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000619166

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000619166 — 1 exons

Exon	Start	End
ENSE00003727803	6466537	6467135

Expression profiles

Bgee: expression breadth ubiquitous, 130 present calls, max score 81.86.

Top tissues by expression

130 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
mucosa of transverse colon	UBERON:0004991	81.86	gold quality
granulocyte	CL:0000094	81.81	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.65	silver quality
bone marrow cell	CL:0002092	79.47	gold quality
bone marrow	UBERON:0002371	78.34	gold quality
blood	UBERON:0000178	77.46	gold quality
spleen	UBERON:0002106	74.25	gold quality
transverse colon	UBERON:0001157	73.87	gold quality
small intestine Peyer’s patch	UBERON:0003454	73.86	gold quality
rectum	UBERON:0001052	73.63	gold quality
lymph node	UBERON:0000029	73.36	gold quality
small intestine	UBERON:0002108	73.17	gold quality
vermiform appendix	UBERON:0001154	73.01	gold quality
metanephros cortex	UBERON:0010533	72.32	gold quality
intestine	UBERON:0000160	72.05	gold quality
colon	UBERON:0001155	71.90	gold quality
tonsil	UBERON:0002372	71.80	gold quality
leukocyte	CL:0000738	71.15	gold quality
right uterine tube	UBERON:0001302	71.08	gold quality
hindlimb stylopod muscle	UBERON:0004252	71.03	gold quality
monocyte	CL:0000576	70.88	gold quality
right lobe of thyroid gland	UBERON:0001119	70.57	gold quality
left lobe of thyroid gland	UBERON:0001120	70.50	gold quality
muscle layer of sigmoid colon	UBERON:0035805	70.44	gold quality
colonic epithelium	UBERON:0000397	70.32	silver quality
cortex of kidney	UBERON:0001225	70.23	gold quality
thyroid gland	UBERON:0002046	70.01	gold quality
muscle tissue	UBERON:0002385	69.92	gold quality
right lobe of liver	UBERON:0001114	69.84	gold quality
duodenum	UBERON:0002114	69.22	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.66

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.