VASH1-DT

Summary

VASH1-DT (VASH1 divergent transcript, HGNC:55446) is a long non-coding RNA gene on chromosome 14q24.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55446
Approved symbol	VASH1-DT
Name	VASH1 divergent transcript
Location	14q24.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000258569
Ensembl biotype	lncRNA
Entrez	120766139
RNAcentral	URS0000031355 — lncRNA, 540 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000556271

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000556271 — 3 exons

Exon	Start	End
ENSE00002441707	76710658	76710815
ENSE00002491399	76711683	76711861
ENSE00002504931	76761186	76761388

Expression profiles

Bgee: expression breadth ubiquitous, 121 present calls, max score 87.91.

Top tissues by expression

121 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	87.91	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.27	gold quality
ganglionic eminence	UBERON:0004023	66.69	gold quality
ventricular zone	UBERON:0003053	66.38	gold quality
colonic epithelium	UBERON:0000397	65.25	silver quality
corpus callosum	UBERON:0002336	62.23	gold quality
right atrium auricular region	UBERON:0006631	62.04	gold quality
vermiform appendix	UBERON:0001154	60.77	gold quality
skeletal muscle tissue	UBERON:0001134	59.88	gold quality
stromal cell of endometrium	CL:0002255	59.50	gold quality
placenta	UBERON:0001987	59.04	gold quality
lymph node	UBERON:0000029	58.89	gold quality
monocyte	CL:0000576	58.80	gold quality
gall bladder	UBERON:0002110	58.20	gold quality
right coronary artery	UBERON:0001625	58.08	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	56.68	gold quality
heart	UBERON:0000948	56.52	gold quality
prefrontal cortex	UBERON:0000451	56.10	gold quality
islet of Langerhans	UBERON:0000006	55.45	gold quality
superior frontal gyrus	UBERON:0002661	55.38	gold quality
apex of heart	UBERON:0002098	55.29	gold quality
lower esophagus mucosa	UBERON:0035834	55.16	gold quality
primary visual cortex	UBERON:0002436	54.75	gold quality
duodenum	UBERON:0002114	54.62	gold quality
smooth muscle tissue	UBERON:0001135	54.59	gold quality
substantia nigra	UBERON:0002038	54.44	gold quality
endometrium	UBERON:0001295	54.26	gold quality
heart left ventricle	UBERON:0002084	53.96	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	53.78	gold quality
tonsil	UBERON:0002372	52.41	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.13

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.