VEPH1
geneOn this page
Also known as FLJ12604KIAA1692
Summary
VEPH1 (ventricular zone expressed PH domain containing 1, HGNC:25735) is a protein-coding gene on chromosome 3q25.31-q25.32, encoding Ventricular zone-expressed PH domain-containing protein homolog 1 (Q14D04). Interacts with TGF-beta receptor type-1 (TGFBR1) and inhibits dissociation of activated SMAD2 from TGFBR1, impeding its nuclear accumulation and resulting in impaired TGF-beta signaling.
Predicted to enable phosphatidylinositol-5-phosphate binding activity. Involved in negative regulation of SMAD protein signal transduction and negative regulation of transforming growth factor beta receptor signaling pathway. Predicted to be located in endomembrane system. Predicted to be active in plasma membrane.
Source: NCBI Gene 79674 — RefSeq curated summary.
At a glance
- GWAS associations: 7
- Clinical variants (ClinVar): 120 total
- MANE Select transcript:
NM_001167912
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:25735 |
| Approved symbol | VEPH1 |
| Name | ventricular zone expressed PH domain containing 1 |
| Location | 3q25.31-q25.32 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ12604, KIAA1692 |
| Ensembl gene | ENSG00000197415 |
| Ensembl biotype | protein_coding |
| OMIM | 609594 |
| Entrez | 79674 |
Gene structure
Transcript identifiers
Ensembl transcripts: 22 — 13 protein_coding, 5 protein_coding_CDS_not_defined, 2 retained_intron, 2 nonsense_mediated_decay
ENST00000362010, ENST00000392832, ENST00000392833, ENST00000461299, ENST00000468233, ENST00000469007, ENST00000472419, ENST00000473907, ENST00000475050, ENST00000479987, ENST00000482434, ENST00000482685, ENST00000483440, ENST00000487753, ENST00000488772, ENST00000489602, ENST00000490235, ENST00000494677, ENST00000537559, ENST00000873027, ENST00000873028, ENST00000970316
RefSeq mRNA: 6 — MANE Select: NM_001167912
NM_001167911, NM_001167912, NM_001167915, NM_001167916, NM_001167917, NM_024621
CCDS: CCDS3179, CCDS54661, CCDS54662, CCDS54663
Canonical transcript exons
ENST00000362010 — 14 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001019544 | 157363364 | 157363761 |
| ENSE00001019550 | 157317062 | 157317201 |
| ENSE00001077011 | 157265526 | 157265662 |
| ENSE00001077012 | 157286557 | 157286674 |
| ENSE00001077015 | 157313621 | 157313755 |
| ENSE00001271857 | 157259742 | 157261370 |
| ENSE00001933482 | 157503277 | 157503416 |
| ENSE00003553585 | 157364303 | 157364512 |
| ENSE00003561694 | 157495212 | 157495506 |
| ENSE00003572724 | 157470314 | 157470529 |
| ENSE00003595592 | 157381156 | 157381376 |
| ENSE00003675721 | 157460181 | 157460355 |
| ENSE00003686970 | 157413881 | 157414090 |
| ENSE00003788071 | 157428322 | 157428488 |
Expression profiles
Bgee: expression breadth ubiquitous, 178 present calls, max score 93.08.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 6.3484 / max 273.0981, expressed in 1042 samples.
FANTOM5 promoters (8 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 45315 | 3.3188 | 589 |
| 45309 | 1.6274 | 263 |
| 45308 | 0.9543 | 299 |
| 45307 | 0.1729 | 99 |
| 202996 | 0.1269 | 71 |
| 45306 | 0.1042 | 58 |
| 45311 | 0.0374 | 12 |
| 45310 | 0.0066 | 3 |
Top tissues by expression
254 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| pigmented layer of retina | UBERON:0001782 | 93.08 | gold quality |
| ventricular zone | UBERON:0003053 | 92.16 | gold quality |
| kidney epithelium | UBERON:0004819 | 91.64 | gold quality |
| lower lobe of lung | UBERON:0008949 | 89.26 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 89.02 | gold quality |
| left adrenal gland | UBERON:0001234 | 88.81 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 88.53 | gold quality |
| right adrenal gland | UBERON:0001233 | 88.29 | gold quality |
| adrenal cortex | UBERON:0001235 | 88.06 | gold quality |
| adrenal gland | UBERON:0002369 | 87.33 | gold quality |
| ganglionic eminence | UBERON:0004023 | 87.29 | gold quality |
| pituitary gland | UBERON:0000007 | 86.38 | gold quality |
| lung | UBERON:0002048 | 85.45 | gold quality |
| corpus epididymis | UBERON:0004359 | 85.08 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 85.00 | gold quality |
| adenohypophysis | UBERON:0002196 | 84.85 | gold quality |
| epithelial cell of pancreas | CL:0000083 | 83.82 | gold quality |
| kidney | UBERON:0002113 | 83.66 | gold quality |
| upper lobe of lung | UBERON:0008948 | 83.49 | gold quality |
| adult mammalian kidney | UBERON:0000082 | 83.33 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 83.02 | gold quality |
| right lung | UBERON:0002167 | 82.60 | gold quality |
| oviduct epithelium | UBERON:0004804 | 82.46 | gold quality |
| monocyte | CL:0000576 | 82.33 | gold quality |
| metanephros cortex | UBERON:0010533 | 81.69 | gold quality |
| body of pancreas | UBERON:0001150 | 81.60 | gold quality |
| renal medulla | UBERON:0000362 | 80.81 | gold quality |
| leukocyte | CL:0000738 | 80.79 | gold quality |
| adrenal tissue | UBERON:0018303 | 80.42 | gold quality |
| cortex of kidney | UBERON:0001225 | 80.15 | gold quality |
Single-cell (SCXA)
Detected in 5 experiment(s), a significant marker in 4.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 20.69 |
| E-GEOD-93593 | yes | 16.24 |
| E-GEOD-130148 | yes | 8.68 |
| E-MTAB-7249 | yes | 3.06 |
| E-CURD-11 | no | 28.81 |
Regulation
Is transcription factor: yes
Downstream targets (CollecTRI)
3 targets.
| Target | Regulation |
|---|---|
| LATS1 | Repression |
| LATS2 | Repression |
| YAP1 | Activation |
Upstream regulators (CollecTRI, top): LATS1, LATS2
miRNA regulators (miRDB)
79 targeting VEPH1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4776-3P | 100.00 | 68.73 | 1340 |
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-656-3P | 100.00 | 72.15 | 2788 |
| HSA-MIR-6758-5P | 100.00 | 66.21 | 1470 |
| HSA-MIR-6856-5P | 100.00 | 65.47 | 1298 |
| HSA-MIR-6870-5P | 99.99 | 68.55 | 2115 |
| HSA-MIR-513B-5P | 99.99 | 69.96 | 2150 |
| HSA-MIR-4803 | 99.98 | 71.99 | 3117 |
| HSA-MIR-520D-5P | 99.98 | 73.34 | 4883 |
| HSA-MIR-524-5P | 99.98 | 73.43 | 4882 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-12136 | 99.98 | 72.81 | 5713 |
| HSA-MIR-4723-5P | 99.97 | 68.70 | 2034 |
| HSA-MIR-5698 | 99.97 | 68.49 | 2029 |
| HSA-MIR-7111-5P | 99.97 | 68.48 | 2062 |
| HSA-MIR-6888-3P | 99.97 | 65.95 | 1170 |
| HSA-MIR-590-3P | 99.96 | 74.34 | 6478 |
| HSA-MIR-6721-5P | 99.93 | 68.92 | 2981 |
| HSA-MIR-4778-3P | 99.93 | 70.40 | 1818 |
| HSA-MIR-4753-3P | 99.90 | 71.03 | 3786 |
| HSA-MIR-7162-3P | 99.89 | 68.16 | 1682 |
| HSA-MIR-130B-5P | 99.83 | 68.50 | 1888 |
| HSA-MIR-6515-3P | 99.82 | 68.19 | 1933 |
| HSA-MIR-4694-3P | 99.79 | 69.53 | 2640 |
| HSA-MIR-320A-3P | 99.77 | 69.73 | 2107 |
| HSA-MIR-320B | 99.77 | 69.73 | 2107 |
| HSA-MIR-320C | 99.77 | 69.73 | 2107 |
| HSA-MIR-320D | 99.77 | 69.73 | 2107 |
| HSA-MIR-4429 | 99.77 | 69.62 | 2111 |
| HSA-MIR-4766-5P | 99.75 | 69.23 | 2662 |
Literature-anchored findings (GeneRIF, showing 7)
- studies indicate that VEPH1 inhibits TGF-beta signaling by impeding the release of activated SMAD2 from TbetaRI and may modulate TGF-beta signaling during development and cancer initiation or progression (PMID:26039994)
- Low VEPH1 expression is associated with ovarian cancer. (PMID:28301874)
- VEPH1 acts to enhance Androgen Receptor (AR) activity in ovarian cancer cells by decreasing SMAD3 and pAKT levels, resulting in increased levels of AR protein. (PMID:31614206)
- A novel role of VEPH1 in regulating AoSMC phenotypic switching. (PMID:32342520)
- Dampened VEPH1 activates mTORC1 signaling by weakening the TSC1/TSC2 association in hepatocellular carcinoma. (PMID:32610114)
- The adaptor protein VEPH1 interacts with the kinase domain of ERBB2 and impacts EGF signaling in ovarian cancer cells. (PMID:36828346)
- VEPH1 suppresses the progression of gastric cancer by regulating the Hippo-YAP signalling pathway. (PMID:37244789)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | veph1 | ENSDARG00000031095 |
| mus_musculus | Veph1 | ENSMUSG00000027831 |
| rattus_norvegicus | Veph1 | ENSRNOG00000012427 |
| drosophila_melanogaster | melt | FBGN0023001 |
| caenorhabditis_elegans | WBGENE00019615 |
Protein
Protein identifiers
Ventricular zone-expressed PH domain-containing protein homolog 1 — Q14D04 (reviewed: Q14D04)
Alternative names: Protein melted
All UniProt accessions (7): C9IZY4, C9J379, C9J4U8, C9JRT0, Q14D04, F8WBD3, F8WBQ3
UniProt curated annotations — full annotation on UniProt →
Function. Interacts with TGF-beta receptor type-1 (TGFBR1) and inhibits dissociation of activated SMAD2 from TGFBR1, impeding its nuclear accumulation and resulting in impaired TGF-beta signaling. May also affect FOXO, Hippo and Wnt signaling.
Subunit / interactions. Interacts with TGFBR1.
Subcellular location. Cell membrane.
Domain organisation. The PH domain is required for membrane targeting.
Similarity. Belongs to the MELT/VEPH family.
Isoforms (4)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q14D04-1 | 1 | yes |
| Q14D04-2 | 2 | |
| Q14D04-3 | 3 | |
| Q14D04-4 | 4 |
RefSeq proteins (6): NP_001161383, NP_001161384, NP_001161387, NP_001161388, NP_001161389, NP_078897 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001849 | PH_domain | Domain |
| IPR011993 | PH-like_dom_sf | Homologous_superfamily |
| IPR016024 | ARM-type_fold | Homologous_superfamily |
| IPR039888 | Melted-like | Family |
Pfam: PF00169
UniProt features (21 total): sequence variant 8, splice variant 5, region of interest 3, sequence conflict 2, chain 1, domain 1, compositionally biased region 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q14D04-F1 | 73.24 | 0.23 |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 0 (showing top):
GO Biological Process (3): regulation of signal transduction (GO:0009966), negative regulation of transforming growth factor beta receptor signaling pathway (GO:0030512), negative regulation of SMAD protein signal transduction (GO:0060392)
GO Molecular Function (2): phosphatidylinositol-5-phosphate binding (GO:0010314), protein binding (GO:0005515)
GO Cellular Component (3): plasma membrane (GO:0005886), endomembrane system (GO:0012505), membrane (GO:0016020)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| negative regulation of transmembrane receptor protein serine/threonine kinase signaling pathway | 2 |
| cellular anatomical structure | 2 |
| signal transduction | 1 |
| regulation of cell communication | 1 |
| regulation of signaling | 1 |
| regulation of response to stimulus | 1 |
| transforming growth factor beta receptor signaling pathway | 1 |
| regulation of transforming growth factor beta receptor signaling pathway | 1 |
| regulation of SMAD protein signal transduction | 1 |
| SMAD protein signal transduction | 1 |
| negative regulation of intracellular signal transduction | 1 |
| anion binding | 1 |
| phosphatidylinositol phosphate binding | 1 |
| binding | 1 |
| membrane | 1 |
| cell periphery | 1 |
| vacuole | 1 |
| plasma membrane | 1 |
Protein interactions and networks
STRING
398 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| VEPH1 | PLEK2 | Q9NYT0 | 610 |
| VEPH1 | CCDC117 | Q8IWD4 | 607 |
| VEPH1 | PLEK | P08567 | 596 |
| VEPH1 | MEGF11 | A6BM72 | 532 |
| VEPH1 | SPMIP2 | Q96LM5 | 490 |
| VEPH1 | ACVR1 | Q04771 | 460 |
| VEPH1 | MSANTD4 | Q8NCY6 | 452 |
| VEPH1 | BMPR1B | P78366 | 427 |
| VEPH1 | SLC16A4 | O15374 | 407 |
| VEPH1 | PTAFR | P25105 | 395 |
| VEPH1 | SLC66A1LP | A1A4F0 | 377 |
| VEPH1 | CNTNAP5 | Q8WYK1 | 369 |
| VEPH1 | CIT | O14578 | 354 |
| VEPH1 | LRRC4 | Q9HBW1 | 329 |
| VEPH1 | F5GXT2 | F5GXT2 | 324 |
IntAct
13 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| SCRIB | VEPH1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| SHANK1 | VEPH1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| VEPH1 | DLG5 | psi-mi:“MI:0915”(physical association) | 0.400 |
| VEPH1 | CFTR | psi-mi:“MI:0915”(physical association) | 0.370 |
| P | psi-mi:“MI:0914”(association) | 0.350 | |
| M | psi-mi:“MI:0914”(association) | 0.350 | |
| VEPH1 | TOP3B | psi-mi:“MI:0914”(association) | 0.350 |
| EIF1B | VEPH1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| GSTK1 | VEPH1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| TSC22D1 | VEPH1 | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (6): TNFAIP3 (Affinity Capture-MS), TOP3B (Affinity Capture-MS), TUBA4A (Affinity Capture-MS), DLG5 (Affinity Capture-MS), VEPH1 (PCA), VEPH1 (Protein-peptide)
ESM2 similar proteins: A0A1B0GW35, A6QNM3, B0R034, B1ANS9, B9EK06, D2KC46, D3ZY60, F1MS15, F1P065, F1REV3, O00522, O15091, O75747, P10911, P58069, Q008S8, Q14449, Q14D04, Q15283, Q32NR9, Q45GW3, Q4R366, Q4R6T7, Q5H9U9, Q5K651, Q5PQS3, Q5XGX5, Q5XIZ9, Q5ZLD2, Q60862, Q63713, Q69Z37, Q6DCF6, Q6S5J6, Q6TNJ1, Q75PQ8, Q80W71, Q86VD1, Q86YR7, Q8C5W4
Diamond homologs: A1A535, A2BID5, Q14D04, Q5PQS3, Q9VS24
SIGNOR signaling
7 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| LATS1 | “down-regulates quantity by repression” | VEPH1 | “transcriptional regulation” |
| LATS2 | “down-regulates quantity by repression” | VEPH1 | “transcriptional regulation” |
| VEPH1 | “down-regulates quantity by repression” | LATS1 | “transcriptional regulation” |
| VEPH1 | “down-regulates quantity by repression” | LATS2 | “transcriptional regulation” |
| VEPH1 | “up-regulates quantity by expression” | YAP1 | “transcriptional regulation” |
| VEPH1 | “down-regulates quantity by repression” | LATS1/2 | “transcriptional regulation” |
| LATS1/2 | “down-regulates quantity by repression” | VEPH1 | “transcriptional regulation” |
Disease & clinical
Clinical variants and AI predictions
ClinVar
120 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 91 |
| Likely benign | 6 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
4045 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 3:157289535:T:C | acceptor_gain | 1.0000 |
| 3:157317199:TGT:T | acceptor_gain | 1.0000 |
| 3:157317202:C:CC | acceptor_gain | 1.0000 |
| 3:157363359:CTTA:C | donor_loss | 1.0000 |
| 3:157363360:TTACC:T | donor_loss | 1.0000 |
| 3:157363361:TA:T | donor_loss | 1.0000 |
| 3:157363362:A:T | donor_loss | 1.0000 |
| 3:157364298:TATA:T | donor_loss | 1.0000 |
| 3:157364300:TACCT:T | donor_loss | 1.0000 |
| 3:157364301:A:AG | donor_loss | 1.0000 |
| 3:157364302:C:CT | donor_loss | 1.0000 |
| 3:157364508:TTCTC:T | acceptor_gain | 1.0000 |
| 3:157364509:TCTC:T | acceptor_gain | 1.0000 |
| 3:157364510:CTC:C | acceptor_gain | 1.0000 |
| 3:157364510:CTCC:C | acceptor_gain | 1.0000 |
| 3:157364511:TC:T | acceptor_gain | 1.0000 |
| 3:157364511:TCC:T | acceptor_gain | 1.0000 |
| 3:157364512:CC:C | acceptor_gain | 1.0000 |
| 3:157364513:C:CC | acceptor_gain | 1.0000 |
| 3:157364513:C:T | acceptor_gain | 1.0000 |
| 3:157364514:T:G | acceptor_loss | 1.0000 |
| 3:157381151:CTCA:C | donor_loss | 1.0000 |
| 3:157381152:TCA:T | donor_loss | 1.0000 |
| 3:157381153:CA:C | donor_loss | 1.0000 |
| 3:157381155:C:CT | donor_loss | 1.0000 |
| 3:157381381:C:CT | acceptor_gain | 1.0000 |
| 3:157413875:ACTT:A | donor_loss | 1.0000 |
| 3:157413876:CTT:C | donor_loss | 1.0000 |
| 3:157413877:TTAC:T | donor_loss | 1.0000 |
| 3:157413878:TA:T | donor_loss | 1.0000 |
AlphaMissense
5554 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 3:157261206:C:A | W810C | 0.999 |
| 3:157261206:C:G | W810C | 0.999 |
| 3:157261208:A:G | W810R | 0.999 |
| 3:157261208:A:T | W810R | 0.999 |
| 3:157261273:A:G | F788S | 0.999 |
| 3:157265585:A:G | W736R | 0.999 |
| 3:157265585:A:T | W736R | 0.999 |
| 3:157286590:A:G | C699R | 0.999 |
| 3:157261267:A:C | I790S | 0.998 |
| 3:157261267:A:G | I790T | 0.998 |
| 3:157265563:A:G | L743P | 0.998 |
| 3:157265583:C:A | W736C | 0.998 |
| 3:157265583:C:G | W736C | 0.998 |
| 3:157265623:A:G | L723P | 0.998 |
| 3:157261240:A:G | F799S | 0.997 |
| 3:157261267:A:T | I790N | 0.997 |
| 3:157261330:A:T | V769E | 0.997 |
| 3:157261339:A:T | L766H | 0.997 |
| 3:157265548:A:G | L748P | 0.997 |
| 3:157265569:A:G | F741S | 0.997 |
| 3:157286581:A:G | C702R | 0.997 |
| 3:157286588:G:C | C699W | 0.997 |
| 3:157286596:A:G | W697R | 0.997 |
| 3:157286596:A:T | W697R | 0.997 |
| 3:157317140:G:C | C599W | 0.997 |
| 3:157317142:A:G | C599R | 0.997 |
| 3:157470466:C:G | A68P | 0.997 |
| 3:157495287:G:C | F21L | 0.997 |
| 3:157495287:G:T | F21L | 0.997 |
| 3:157495289:A:G | F21L | 0.997 |
dbSNP variants (sampled 300 via entrez): RS1000029998 (3:157503339 C>T), RS1000031187 (3:157391192 C>A), RS1000036006 (3:157372253 C>G,T), RS1000038135 (3:157325551 G>A,T), RS1000041938 (3:157289707 C>T), RS1000065281 (3:157401289 T>C), RS1000074101 (3:157437519 C>A,G,T), RS1000083255 (3:157287953 C>T), RS1000121904 (3:157277579 C>A), RS1000142113 (3:157382081 G>A), RS1000145280 (3:157348961 CA>C), RS1000148183 (3:157460780 G>A), RS1000154626 (3:157479958 G>A), RS1000158314 (3:157489515 T>G), RS1000180454 (3:157463159 G>A)
Disease associations
OMIM: gene MIM:609594 | disease phenotypes: MIM:192500
GenCC curated gene-disease
Mondo (1): familial long QT syndrome (MONDO:0019171)
Orphanet (2): Romano-Ward syndrome (Orphanet:101016), Congenital long QT syndrome (Orphanet:768)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
7 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001017_11 | Diabetic retinopathy | 9.000000e-07 |
| GCST001108_2 | Smoking cessation in chronic obstructive pulmonary disease | 8.000000e-06 |
| GCST003189_1 | Hepatocellular carcinoma in hepatitis B infection | 2.000000e-06 |
| GCST005951_143 | Body mass index | 4.000000e-08 |
| GCST009188_5 | Lingual gyrus volume | 8.000000e-06 |
| GCST011365_88 | Myocardial infarction | 5.000000e-07 |
| GCST90020029_724 | Waist circumference adjusted for body mass index | 3.000000e-09 |
EFO canonical traits (3, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004319 | smoking cessation |
| EFO:0004340 | body mass index |
| EFO:0007789 | BMI-adjusted waist circumference |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
53 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | decreases expression, affects cotreatment, increases abundance, increases expression | 4 |
| Valproic Acid | decreases expression, increases expression | 3 |
| bisphenol A | decreases methylation, increases expression, affects methylation, affects cotreatment | 2 |
| entinostat | increases expression, affects cotreatment | 2 |
| (+)-JQ1 compound | decreases expression | 2 |
| Panobinostat | affects cotreatment, increases expression | 2 |
| Arsenic | affects expression, affects cotreatment, increases abundance, increases expression | 2 |
| Nickel | decreases expression | 2 |
| Aflatoxin B1 | decreases expression, decreases methylation | 2 |
| FR900359 | increases phosphorylation | 1 |
| sotorasib | affects cotreatment, decreases expression | 1 |
| methyleugenol | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| beta-lapachone | decreases expression | 1 |
| mono-(2-ethylhexyl)phthalate | increases expression | 1 |
| cobaltous chloride | decreases expression | 1 |
| perfluorooctane sulfonic acid | increases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| 2-palmitoylglycerol | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| belinostat | affects cotreatment, increases expression | 1 |
| abrine | decreases expression | 1 |
| dorsomorphin | affects cotreatment, increases expression | 1 |
| bisphenol S | decreases methylation | 1 |
| jinfukang | affects cotreatment, decreases expression | 1 |
| incobotulinumtoxinA | increases expression | 1 |
| NSC 689534 | affects binding, increases expression | 1 |
| trametinib | affects cotreatment, decreases expression | 1 |
| NVP-BKM120 | decreases expression, affects cotreatment | 1 |
| Dasatinib | decreases expression | 1 |
Clinical trials (associated diseases)
66 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT02513940 | PHASE4 | COMPLETED | Influence of Testosterone Administration on Drug-Induced QT Interval Prolongation and Torsades de Pointes |
| NCT03834883 | PHASE4 | COMPLETED | Reducing the Risk of Drug-Induced QT Interval Lengthening in Women |
| NCT04169100 | PHASE4 | UNKNOWN | Novel Form of Acquired Long QT Syndrome |
| NCT04675788 | PHASE4 | COMPLETED | Novel Approaches for Minimizing Drug-Induced QT Interval Lengthening |
| NCT01648205 | PHASE2 | COMPLETED | Long-term Efficacy Study of Sodium Channel Blocker in LQT3 Patients |
| NCT02412709 | PHASE2 | UNKNOWN | Long QT Syndrome Screening in Newborns |
| NCT04581408 | PHASE2 | COMPLETED | Mutation-specific Therapy for the Long QT Syndrome |
| NCT00316459 | PHASE1 | COMPLETED | Study Evaluating the Effects of Multiple Oral Doses of ERB-041 on Cardiac Repolarization in Healthy Subjects |
| NCT01849003 | PHASE1 | COMPLETED | Study of the Effect of GS-6615 in Subjects With LQT-3 |
| NCT02365532 | PHASE1 | COMPLETED | Effect of Oral GS-6615 on Dofetilide-Induced QT Prolongation, Safety, and Tolerability in Healthy Adults |
| NCT02412098 | PHASE1 | COMPLETED | Pharmacokinetics of Eleclazine in Adults With Normal and Impaired Hepatic Function |
| NCT02441829 | PHASE1 | COMPLETED | Pharmacokinetics of Eleclazine in Adults With Normal and Impaired Renal Function |
| NCT05759962 | PHASE1 | COMPLETED | Phase 1 Study of LQT-1213 in Healthy Adults |
| NCT05906732 | PHASE1/PHASE2 | TERMINATED | Study of LQT-1213 on QTc-induced Prolongation in Healthy Adult Subjects (Part1) and on Congenital Long QT in Patients Diagnosed With Type 2 or 3 Long QT Syndrome (Part 2). |
| NCT00005176 | Not specified | COMPLETED | Long QT Syndrome-Population Genetics and Cardiac Studies |
| NCT00005250 | Not specified | COMPLETED | Linkage Study of Long QT Syndrome In An Amish Kindred |
| NCT00005367 | Not specified | COMPLETED | Epidemiology of Long QTand Asian Sudden Death in Sleep |
| NCT00221832 | Not specified | UNKNOWN | Molecular Genetic Screening and Identification of Congenital Arrhythmogenic Diseases |
| NCT00292032 | Not specified | COMPLETED | Registry of Unexplained Cardiac Arrest |
| NCT00335036 | Not specified | TERMINATED | Pediatric Lead Extractability and Survival Evaluation (PLEASE) |
| NCT00399412 | Not specified | COMPLETED | ECG Signal Collection From Long QT Syndrome, Wide QRS Complexes, Heart Failure, and Cardiac Resynchronization Patients |
| NCT00488254 | Not specified | COMPLETED | The Long QT Syndrome in Pregnancy |
| NCT00588965 | Not specified | COMPLETED | Effect of Beta-blocker Therapy on QTc Response in Exercise and Recovery in Normal Subjects |
| NCT01705925 | Not specified | COMPLETED | Multicenter Evaluation of Children and Young Adults With Genotype Positive Long QT Syndrome |
| NCT01903564 | Not specified | COMPLETED | Fetal and Neonatal Magnetophysiology |
| NCT02082431 | Not specified | COMPLETED | Determine the Incidence of Long QT Amongst a Large Cohort of Subjects Diagnosed With Unilateral or Bilateral Sensorineural Hearing Loss. |
| NCT02413450 | Not specified | ENROLLING_BY_INVITATION | Derivation of Human Induced Pluripotent Stem (iPS) Cells to Heritable Cardiac Arrhythmias |
| NCT02425189 | Not specified | COMPLETED | The Canadian National Long QT Syndrome Registry |
| NCT02439645 | Not specified | TERMINATED | A Registry to Determine the Clinical and Genetic Risk Factors for Torsade De Pointes |
| NCT02439658 | Not specified | UNKNOWN | Genetics of QT Prolongation With Antiarrhythmics |
| NCT02549664 | Not specified | COMPLETED | Exercise in Genetic Cardiovascular Conditions |
| NCT02581241 | Not specified | COMPLETED | Abnormal QT-Response to the Sudden Tachycardia Provoked by Standing in Individuals With Drug-induced Long QT Syndrome |
| NCT02680080 | Not specified | COMPLETED | Effect of Grapefruit on QT Interval in Healthy Volunteers and Patients With Congenital Long QT Syndrome |
| NCT02775513 | Not specified | UNKNOWN | Metabolism of Patients With Genetically Caused Cardiac Arrhythmia |
| NCT02814981 | Not specified | UNKNOWN | Hydroxyzine and Risk of Prolongation of QT Interval |
| NCT02876380 | Not specified | COMPLETED | Prospective Identification of Long QT Syndrome in Fetal Life |
| NCT03182777 | Not specified | COMPLETED | Safety of Local Dental Anesthesia in Patients With Cardiac Channelopathies |
| NCT03544918 | Not specified | COMPLETED | Prevalence of Congenital Long QT Syndrome and Acquired QT Prolongation in a Hospital Cohort |
| NCT03642405 | Not specified | UNKNOWN | Drug-induced Repolarization ECG Changes |
| NCT03678311 | Not specified | COMPLETED | Long QT Syndrome and Sleep Apnea |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): diabetic retinopathy, familial long QT syndrome, hepatocellular carcinoma