VOPP1-DT

Summary

VOPP1-DT (VOPP1 divergent transcript, HGNC:55874) is a long non-coding RNA gene on chromosome 7p11.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55874
Approved symbol	VOPP1-DT
Name	VOPP1 divergent transcript
Location	7p11.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000223475
Ensembl biotype	lncRNA
Entrez	105375287
RNAcentral	URS00026A1BEE — lncRNA, 5699 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000454777

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000454777 — 3 exons

Exon	Start	End
ENSE00001628331	55573171	55573317
ENSE00001765139	55588096	55588336
ENSE00001796083	55587771	55587934

Expression profiles

Bgee: expression breadth ubiquitous, 106 present calls, max score 70.20.

Top tissues by expression

106 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
pituitary gland	UBERON:0000007	70.20	gold quality
adenohypophysis	UBERON:0002196	68.68	gold quality
bone marrow cell	CL:0002092	66.55	silver quality
hindlimb stylopod muscle	UBERON:0004252	64.44	gold quality
smooth muscle tissue	UBERON:0001135	57.22	gold quality
lymph node	UBERON:0000029	56.43	gold quality
bone marrow	UBERON:0002371	55.84	silver quality
tonsil	UBERON:0002372	55.33	gold quality
vermiform appendix	UBERON:0001154	54.35	gold quality
gall bladder	UBERON:0002110	53.57	gold quality
calcaneal tendon	UBERON:0003701	52.59	gold quality
muscle of leg	UBERON:0001383	52.37	gold quality
monocyte	CL:0000576	51.97	gold quality
gastrocnemius	UBERON:0001388	51.87	gold quality
prefrontal cortex	UBERON:0000451	51.72	gold quality
islet of Langerhans	UBERON:0000006	51.67	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	51.19	gold quality
mucosa of stomach	UBERON:0001199	51.10	gold quality
liver	UBERON:0002107	50.71	gold quality
blood	UBERON:0000178	49.86	silver quality
endometrium	UBERON:0001295	48.83	gold quality
superior frontal gyrus	UBERON:0002661	48.78	gold quality
brain	UBERON:0000955	48.66	gold quality
lower esophagus muscularis layer	UBERON:0035833	48.54	gold quality
lower esophagus	UBERON:0013473	48.47	gold quality
adult mammalian kidney	UBERON:0000082	48.03	gold quality
primary visual cortex	UBERON:0002436	47.82	silver quality
esophagogastric junction muscularis propria	UBERON:0035841	47.60	gold quality
kidney	UBERON:0002113	47.49	gold quality
esophagus	UBERON:0001043	47.37	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.82

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.