VPS13C-DT

Summary

VPS13C-DT (VPS13C divergent transcript, HGNC:55425) is a long non-coding RNA gene on chromosome 15q22.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55425
Approved symbol	VPS13C-DT
Name	VPS13C divergent transcript
Location	15q22.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000259251
Ensembl biotype	lncRNA
Entrez	101928907
RNAcentral	URS0000A775C3 — lncRNA, 1823 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000558368, ENST00000560813, ENST00000818616

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000558368 — 1 exons

Exon	Start	End
ENSE00002559220	62060514	62062434

Expression profiles

Bgee: expression breadth ubiquitous, 142 present calls, max score 81.52.

Top tissues by expression

230 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.52	gold quality
buccal mucosa cell	CL:0002336	81.10	silver quality
bone marrow cell	CL:0002092	65.65	silver quality
ganglionic eminence	UBERON:0004023	64.72	gold quality
right uterine tube	UBERON:0001302	64.48	gold quality
ventricular zone	UBERON:0003053	63.52	gold quality
nucleus accumbens	UBERON:0001882	60.67	gold quality
left testis	UBERON:0004533	60.33	gold quality
islet of Langerhans	UBERON:0000006	59.64	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	59.59	gold quality
caudate nucleus	UBERON:0001873	59.51	gold quality
testis	UBERON:0000473	59.17	gold quality
right testis	UBERON:0004534	58.68	gold quality
putamen	UBERON:0001874	58.53	gold quality
anterior cingulate cortex	UBERON:0009835	58.49	gold quality
prefrontal cortex	UBERON:0000451	58.30	gold quality
amygdala	UBERON:0001876	58.01	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	57.78	gold quality
hypothalamus	UBERON:0001898	57.53	gold quality
spinal cord	UBERON:0002240	56.18	gold quality
ectocervix	UBERON:0012249	55.72	gold quality
substantia nigra	UBERON:0002038	55.39	gold quality
granulocyte	CL:0000094	55.19	gold quality
Brodmann (1909) area 9	UBERON:0013540	55.08	gold quality
oviduct epithelium	UBERON:0004804	54.86	silver quality
leukocyte	CL:0000738	54.56	silver quality
sural nerve	UBERON:0015488	53.97	silver quality
neocortex	UBERON:0001950	53.93	gold quality
forebrain	UBERON:0001890	53.60	gold quality
midbrain	UBERON:0001891	53.50	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.93

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.