WHAMM
gene geneOn this page
Also known as KIAA1971WHAMM1
Summary
WHAMM (WASP homolog associated with actin, golgi membranes and microtubules, HGNC:30493) is a protein-coding gene on chromosome 15q25.2, encoding WASP homolog-associated protein with actin, membranes and microtubules (Q8TF30). Acts as a nucleation-promoting factor (NPF) that stimulates Arp2/3-mediated actin polymerization both at the Golgi apparatus and along tubular membranes.
This gene encodes a protein that plays a role in actin nucleation, Golgi membrane association and microtubule binding. The encoded protein is a nucleation-promoting factor that regulates the Actin-related protein 2/3 complex. The activated complex initiates growth of new actin filaments by binding to existing actin filaments. The encoded protein also functions in regulation of transport from the endoplasmic reticulum to the Golgi complex and in maintenance of the Golgi complex near the centrosome. Four pseudogenes of this gene are present on the same arm of chromosome 15 as this gene.
Source: NCBI Gene 123720 — RefSeq curated summary.
At a glance
- GWAS associations: 1
- Clinical variants (ClinVar): 109 total
- MANE Select transcript:
NM_001080435
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:30493 |
| Approved symbol | WHAMM |
| Name | WASP homolog associated with actin, golgi membranes and microtubules |
| Location | 15q25.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | KIAA1971, WHAMM1 |
| Ensembl gene | ENSG00000156232 |
| Ensembl biotype | protein_coding |
| OMIM | 612393 |
| Entrez | 123720 |
Gene structure
Transcript identifiers
Ensembl transcripts: 4 — 3 protein_coding, 1 retained_intron
ENST00000286760, ENST00000560964, ENST00000944533, ENST00000944534
RefSeq mRNA: 1 — MANE Select: NM_001080435
NM_001080435
CCDS: CCDS45333
Canonical transcript exons
ENST00000286760 — 10 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001104686 | 82830599 | 82831079 |
| ENSE00001104799 | 82813103 | 82813276 |
| ENSE00001184594 | 82826751 | 82826846 |
| ENSE00001184630 | 82833229 | 82836108 |
| ENSE00001753680 | 82826410 | 82826496 |
| ENSE00001755454 | 82816692 | 82816842 |
| ENSE00002550159 | 82809628 | 82810335 |
| ENSE00003582234 | 82819323 | 82819488 |
| ENSE00003631259 | 82823100 | 82823287 |
| ENSE00003661000 | 82817920 | 82818089 |
Expression profiles
Bgee: expression breadth ubiquitous, 244 present calls, max score 92.38.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 11.2415 / max 388.2914, expressed in 1767 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 148104 | 8.0893 | 1712 |
| 148105 | 1.8802 | 671 |
| 148103 | 1.2721 | 798 |
Top tissues by expression
263 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| amniotic fluid | UBERON:0000173 | 92.38 | gold quality |
| oviduct epithelium | UBERON:0004804 | 89.52 | gold quality |
| calcaneal tendon | UBERON:0003701 | 87.31 | gold quality |
| epithelial cell of pancreas | CL:0000083 | 87.01 | silver quality |
| gastrocnemius | UBERON:0001388 | 86.41 | gold quality |
| muscle of leg | UBERON:0001383 | 85.80 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 85.48 | gold quality |
| tibialis anterior | UBERON:0001385 | 85.37 | silver quality |
| skeletal muscle tissue | UBERON:0001134 | 85.31 | gold quality |
| skeletal muscle organ | UBERON:0014892 | 85.28 | gold quality |
| tendon | UBERON:0000043 | 85.25 | gold quality |
| upper arm skin | UBERON:0004263 | 85.25 | silver quality |
| deltoid | UBERON:0001476 | 84.67 | silver quality |
| ileal mucosa | UBERON:0000331 | 84.65 | silver quality |
| granulocyte | CL:0000094 | 83.98 | gold quality |
| muscle tissue | UBERON:0002385 | 83.97 | gold quality |
| bone marrow cell | CL:0002092 | 83.74 | gold quality |
| sural nerve | UBERON:0015488 | 83.73 | gold quality |
| quadriceps femoris | UBERON:0001377 | 82.36 | gold quality |
| vastus lateralis | UBERON:0001379 | 82.15 | silver quality |
| pancreatic ductal cell | CL:0002079 | 82.14 | silver quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 81.81 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 81.73 | gold quality |
| jejunum | UBERON:0002115 | 81.64 | gold quality |
| biceps brachii | UBERON:0001507 | 81.52 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 81.47 | gold quality |
| palpebral conjunctiva | UBERON:0001812 | 81.33 | gold quality |
| parietal pleura | UBERON:0002400 | 81.24 | gold quality |
| islet of Langerhans | UBERON:0000006 | 81.07 | gold quality |
| jejunal mucosa | UBERON:0000399 | 81.06 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 3.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-4 | yes | 96.18 |
| E-ANND-3 | yes | 5.50 |
| E-MTAB-6678 | yes | 5.01 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
63 targeting WHAMM, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-LET-7A-3P | 100.00 | 74.03 | 3932 |
| HSA-LET-7B-3P | 100.00 | 74.08 | 3913 |
| HSA-LET-7F-1-3P | 100.00 | 74.02 | 3928 |
| HSA-MIR-98-3P | 100.00 | 74.08 | 3907 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-4262 | 100.00 | 73.26 | 3931 |
| HSA-MIR-371B-5P | 99.99 | 75.34 | 4759 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-5696 | 99.98 | 72.36 | 4487 |
| HSA-MIR-373-5P | 99.98 | 75.36 | 4753 |
| HSA-MIR-616-5P | 99.98 | 75.58 | 4775 |
| HSA-MIR-6888-3P | 99.97 | 65.95 | 1170 |
| HSA-MIR-548AJ-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-548X-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-23A-3P | 99.95 | 74.24 | 3163 |
| HSA-MIR-23B-3P | 99.95 | 74.24 | 3163 |
| HSA-MIR-23C | 99.95 | 73.92 | 3192 |
| HSA-MIR-539-5P | 99.93 | 70.30 | 2855 |
| HSA-MIR-6744-5P | 99.93 | 66.82 | 748 |
| HSA-MIR-4492 | 99.87 | 68.25 | 3611 |
| HSA-MIR-579-3P | 99.86 | 71.66 | 3628 |
| HSA-MIR-664B-3P | 99.84 | 71.65 | 3590 |
| HSA-MIR-199A-3P | 99.75 | 70.48 | 929 |
| HSA-MIR-199B-3P | 99.75 | 70.48 | 929 |
| HSA-MIR-3129-5P | 99.75 | 70.46 | 914 |
| HSA-MIR-4524A-3P | 99.72 | 66.85 | 2406 |
| HSA-MIR-33A-3P | 99.70 | 70.27 | 3362 |
| HSA-MIR-1827 | 99.63 | 68.57 | 3265 |
| HSA-MIR-142-3P | 99.62 | 71.30 | 974 |
| HSA-MIR-762 | 99.58 | 66.61 | 1994 |
Literature-anchored findings (GeneRIF, showing 7)
- results give rise to a model whereby distinct MT-bound and actin-nucleating populations of WHAMM collaborate during membrane tubulation (PMID:23027905)
- Data show that RhoD binds the actin nucleation-promoting factor WHAMM (WASp homologue associated with actin Golgi membranes and microtubules), as well as the related filamin A-binding protein FILIP1. (PMID:23087206)
- WHAMM directs the Arp2/3 complex to the endoplasmic reticulum for autophagosome biogenesis through an actin comet tail mechanism. (PMID:26096974)
- WHAMM is required for autophagic lysosome reformation. WHAMM works as an actin nucleation promoting factor which promotes assembly of an actin scaffold on the surface of the autolysosome to promote autolysosome tabulation. (PMID:31420534)
- An actin-WHAMM interaction linking SETD2 and autophagy. (PMID:33036756)
- The actin nucleation factors JMY and WHAMM enable a rapid Arp2/3 complex-mediated intrinsic pathway of apoptosis. (PMID:33872315)
- WHAMM functions in kidney reabsorption and polymerizes actin to promote autophagosomal membrane closure and cargo sequestration. (PMID:38598293)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | ENSDARG00000103011 | |
| mus_musculus | Whamm | ENSMUSG00000045795 |
| rattus_norvegicus | Whamm | ENSRNOG00000028113 |
Paralogs (2): PRR11 (ENSG00000068489), JMY (ENSG00000152409)
Protein
Protein identifiers
WASP homolog-associated protein with actin, membranes and microtubules — Q8TF30 (reviewed: Q8TF30)
Alternative names: WAS protein homology region 2 domain-containing protein 1
All UniProt accessions (1): Q8TF30
UniProt curated annotations — full annotation on UniProt →
Function. Acts as a nucleation-promoting factor (NPF) that stimulates Arp2/3-mediated actin polymerization both at the Golgi apparatus and along tubular membranes. Its activity in membrane tubulation requires F-actin and interaction with microtubules. Proposed to use coordinated actin-nucleating and microtubule-binding activities of distinct WHAMM molecules to drive membrane tubule elongation; when MT-bound can recruit and remodel membrane vesicles but is prevented to activate the Arp2/3 complex. Involved as a regulator of Golgi positioning and morphology. Participates in vesicle transport between the reticulum endoplasmic and the Golgi complex. Required for RhoD-dependent actin reorganization such as in cell adhesion and cell migration.
Subunit / interactions. Interacts with ACTR3; indicative for an association with the ARP2/3 complex. Associates with microtubules; in vitro binds to tubulin heterodimer in a 1:1 stoichiometry; decorates microtubules with a repeat of 80 A along protofilaments. Interacts with RHOD (in GTP-bound form).
Subcellular location. Cytoplasm. Endoplasmic reticulum-Golgi intermediate compartment. Cytoplasmic vesicle membrane. Golgi apparatus. cis-Golgi network.
Tissue specificity. Expressed in brain, lung, heart, colon and kidney (at protein level).
Domain organisation. The N-terminal region associates with membranes, the coiled-coil region binds to microtubules and the WH2 domains promotes actin nucleation.
RefSeq proteins (1): NP_001073904* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR003124 | WH2_dom | Domain |
| IPR031738 | JMY/WHAMM | Domain |
| IPR031808 | JMY/WHAMM_N | Domain |
Pfam: PF15871, PF15920
UniProt features (29 total): region of interest 8, sequence variant 6, compositionally biased region 5, coiled-coil region 4, domain 2, modified residue 2, chain 1, mutagenesis site 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 5X1G | ELECTRON MICROSCOPY | 4.5 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q8TF30-F1 | 73.76 | 0.41 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (2): 606, 795
Mutagenesis-validated functional residues (1):
| Position | Phenotype |
|---|---|
| 807 | decreases nucleation-promoting factor activity and arp2/3 complex activation. |
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-9013405 | RHOD GTPase cycle |
MSigDB gene sets: 149 (showing top):
GOBP_REGULATION_OF_ACTIN_NUCLEATION, GOBP_FOCAL_ADHESION_ASSEMBLY, GOBP_PLASMA_MEMBRANE_ORGANIZATION, BROWNE_HCMV_INFECTION_16HR_UP, GOBP_VESICLE_MEDIATED_TRANSPORT, GOMF_GTPASE_BINDING, GOBP_POSITIVE_REGULATION_OF_ORGANELLE_ORGANIZATION, GOBP_REGULATION_OF_ACTIN_FILAMENT_BASED_PROCESS, GOBP_CELL_JUNCTION_ORGANIZATION, GOBP_ENDOPLASMIC_RETICULUM_TO_GOLGI_VESICLE_MEDIATED_TRANSPORT, FOSTER_TOLERANT_MACROPHAGE_UP, GOBP_POSITIVE_REGULATION_OF_ACTIN_NUCLEATION, GOBP_ACTIN_FILAMENT_ORGANIZATION, GOBP_ENDOMEMBRANE_SYSTEM_ORGANIZATION, GOBP_LAMELLIPODIUM_ORGANIZATION
GO Biological Process (7): endoplasmic reticulum to Golgi vesicle-mediated transport (GO:0006888), actin filament organization (GO:0007015), lamellipodium assembly (GO:0030032), Arp2/3 complex-mediated actin nucleation (GO:0034314), focal adhesion assembly (GO:0048041), positive regulation of actin nucleation (GO:0051127), plasma membrane tubulation (GO:0097320)
GO Molecular Function (4): actin binding (GO:0003779), microtubule binding (GO:0008017), small GTPase binding (GO:0031267), Arp2/3 complex binding (GO:0071933)
GO Cellular Component (10): Golgi membrane (GO:0000139), cytoplasm (GO:0005737), cytosol (GO:0005829), microtubule (GO:0005874), cytoplasmic vesicle membrane (GO:0030659), endoplasmic reticulum-Golgi intermediate compartment membrane (GO:0033116), endoplasmic reticulum-Golgi intermediate compartment (GO:0005793), Golgi apparatus (GO:0005794), membrane (GO:0016020), cytoplasmic vesicle (GO:0031410)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| RHO GTPase cycle | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cytoplasm | 5 |
| cellular anatomical structure | 3 |
| actin nucleation | 2 |
| bounding membrane of organelle | 2 |
| intracellular membrane-bounded organelle | 2 |
| intercellular transport | 1 |
| intracellular transport | 1 |
| Golgi vesicle transport | 1 |
| actin cytoskeleton organization | 1 |
| supramolecular fiber organization | 1 |
| lamellipodium organization | 1 |
| plasma membrane bounded cell projection assembly | 1 |
| cell-substrate junction assembly | 1 |
| cell-matrix adhesion | 1 |
| regulation of actin nucleation | 1 |
| positive regulation of cytoskeleton organization | 1 |
| positive regulation of supramolecular fiber organization | 1 |
| plasma membrane organization | 1 |
| cytoskeletal protein binding | 1 |
| tubulin binding | 1 |
| GTPase binding | 1 |
| protein-containing complex binding | 1 |
| Golgi apparatus | 1 |
| intracellular anatomical structure | 1 |
| microtubule cytoskeleton | 1 |
| polymeric cytoskeletal fiber | 1 |
| vesicle membrane | 1 |
| cytoplasmic vesicle | 1 |
| endoplasmic reticulum-Golgi intermediate compartment | 1 |
| endomembrane system | 1 |
| intracellular vesicle | 1 |
Protein interactions and networks
STRING
1072 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| WHAMM | WAS | P42768 | 871 |
| WHAMM | WASF1 | Q92558 | 838 |
| WHAMM | GOLGA2 | Q08379 | 749 |
| WHAMM | RHOD | O00212 | 661 |
| WHAMM | FILIP1 | Q7Z7B0 | 587 |
| WHAMM | WASF2 | Q9Y6W5 | 581 |
| WHAMM | AP3B2 | Q13367 | 571 |
| WHAMM | ABHD12B | Q7Z5M8 | 571 |
| WHAMM | CFL2 | Q9Y281 | 568 |
| WHAMM | CFL1 | P23528 | 567 |
| WHAMM | BRK1 | Q8WUW1 | 540 |
| WHAMM | WASF3 | Q9UPY6 | 516 |
| WHAMM | WASHC3 | Q9Y3C0 | 510 |
| WHAMM | HCLS1 | P14317 | 491 |
| WHAMM | CTTN | Q14247 | 488 |
IntAct
13 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| RAB39B | CBL | psi-mi:“MI:0914”(association) | 0.530 |
| WHAMM | psi-mi:“MI:0915”(physical association) | 0.460 | |
| WHAMM | psi-mi:“MI:0403”(colocalization) | 0.460 | |
| ESR1 | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| ACTG1 | ENAH | psi-mi:“MI:0914”(association) | 0.350 |
| RAB43 | TRAPPC13 | psi-mi:“MI:0914”(association) | 0.350 |
| TXLNA | CENPF | psi-mi:“MI:0914”(association) | 0.350 |
| CDC5L | WHAMM | psi-mi:“MI:0915”(physical association) | 0.000 |
| ITSN1 | WHAMM | psi-mi:“MI:0915”(physical association) | 0.000 |
| TTC3 | WHAMM | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (13): WHAMM (Affinity Capture-MS), WHAMM (Affinity Capture-MS), WHAMM (Proximity Label-MS), WHAMM (Affinity Capture-MS), WHAMM (Affinity Capture-MS), WHAMM (Affinity Capture-MS), WHAMM (Affinity Capture-MS), WHAMM (Affinity Capture-MS), WHAMM (Two-hybrid), WHAMM (Two-hybrid), WHAMM (Affinity Capture-RNA), WHAMM (Proximity Label-MS), WHAMM (Proximity Label-MS)
ESM2 similar proteins: A0JNG4, A1L3T7, B1AVH7, B5DFA1, D2H0G5, E1U8D0, E9QHE3, I1VZH0, O08629, O60826, O75052, O94964, P58660, P86182, P98171, Q13263, Q149G0, Q1LWB0, Q1RMI8, Q3ULW6, Q3V3A7, Q571B6, Q58D79, Q5JV73, Q5R8S0, Q62318, Q6P4K6, Q6PGG2, Q6ZQ29, Q6ZRF8, Q768S4, Q7TSI1, Q80TQ5, Q8BL43, Q8C7B8, Q8IWE5, Q8K1S6, Q8N163, Q8TF30, Q8VDP4
Diamond homologs: A8E4X8, Q1A5X7, Q571B6, Q6NVC9, Q8N9B5, Q8TF30, Q9QXM1
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| WHAMM | “up-regulates activity” | ARP2/3 | binding |
Disease & clinical
Clinical variants and AI predictions
ClinVar
109 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 96 |
| Likely benign | 5 |
| Benign | 2 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1951 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 15:82810333:CAGGT:C | donor_loss | 1.0000 |
| 15:82810336:GT:G | donor_loss | 1.0000 |
| 15:82810337:T:G | donor_loss | 1.0000 |
| 15:82811352:G:GT | donor_gain | 1.0000 |
| 15:82813090:ATTT:A | acceptor_gain | 1.0000 |
| 15:82813101:A:AG | acceptor_gain | 1.0000 |
| 15:82813101:AG:A | acceptor_gain | 1.0000 |
| 15:82813102:G:GT | acceptor_gain | 1.0000 |
| 15:82813102:GG:G | acceptor_gain | 1.0000 |
| 15:82813102:GGT:G | acceptor_gain | 1.0000 |
| 15:82813102:GGTT:G | acceptor_gain | 1.0000 |
| 15:82813102:GGTTA:G | acceptor_gain | 1.0000 |
| 15:82813181:G:GT | donor_gain | 1.0000 |
| 15:82813213:G:GG | donor_gain | 1.0000 |
| 15:82813234:GGC:G | donor_gain | 1.0000 |
| 15:82813244:G:GT | donor_gain | 1.0000 |
| 15:82813260:G:GG | donor_gain | 1.0000 |
| 15:82816686:CTGTA:C | acceptor_loss | 1.0000 |
| 15:82816687:TGTA:T | acceptor_loss | 1.0000 |
| 15:82816688:GTAGA:G | acceptor_loss | 1.0000 |
| 15:82816690:A:AG | acceptor_gain | 1.0000 |
| 15:82816691:G:C | acceptor_loss | 1.0000 |
| 15:82816691:G:GA | acceptor_gain | 1.0000 |
| 15:82816691:GA:G | acceptor_gain | 1.0000 |
| 15:82816691:GAA:G | acceptor_gain | 1.0000 |
| 15:82816691:GAAGT:G | acceptor_gain | 1.0000 |
| 15:82816797:G:GT | donor_gain | 1.0000 |
| 15:82816806:G:GG | donor_gain | 1.0000 |
| 15:82816827:G:GG | donor_gain | 1.0000 |
| 15:82816839:GCAGG:G | donor_loss | 1.0000 |
AlphaMissense
5253 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 15:82826809:G:C | R535P | 0.995 |
| 15:82809814:T:C | F30L | 0.993 |
| 15:82809815:T:C | F30S | 0.993 |
| 15:82809816:C:A | F30L | 0.993 |
| 15:82809816:C:G | F30L | 0.993 |
| 15:82826808:C:A | R535S | 0.991 |
| 15:82809848:T:C | F41S | 0.989 |
| 15:82826830:T:C | L542S | 0.988 |
| 15:82826827:G:C | R541P | 0.987 |
| 15:82809760:T:A | W12R | 0.981 |
| 15:82809760:T:C | W12R | 0.981 |
| 15:82809847:T:C | F41L | 0.978 |
| 15:82809849:C:A | F41L | 0.978 |
| 15:82809849:C:G | F41L | 0.978 |
| 15:82816815:T:C | F303L | 0.977 |
| 15:82816817:T:A | F303L | 0.977 |
| 15:82816817:T:G | F303L | 0.977 |
| 15:82809848:T:G | F41C | 0.976 |
| 15:82817955:T:C | F324L | 0.975 |
| 15:82817957:T:A | F324L | 0.975 |
| 15:82817957:T:G | F324L | 0.975 |
| 15:82809762:G:C | W12C | 0.973 |
| 15:82809762:G:T | W12C | 0.973 |
| 15:82810180:T:C | Y152H | 0.966 |
| 15:82826821:T:C | L539P | 0.965 |
| 15:82833346:T:C | I747T | 0.965 |
| 15:82823244:G:C | R472P | 0.964 |
| 15:82809826:T:A | W34R | 0.961 |
| 15:82809826:T:C | W34R | 0.961 |
| 15:82809854:T:A | V43E | 0.961 |
dbSNP variants (sampled 300 via entrez): RS1000019937 (15:82832654 C>T), RS1000053567 (15:82829410 A>C,G), RS1000078693 (15:82808340 A>G), RS1000216909 (15:82825890 C>G), RS1000363922 (15:82832297 A>G), RS1000393073 (15:82831910 T>C), RS1000537285 (15:82835794 T>A), RS1000728897 (15:82832353 G>A,C,T), RS1000821655 (15:82835572 C>T), RS1000844679 (15:82808976 T>C), RS1000879808 (15:82815810 G>A), RS1000977794 (15:82836447 G>A,T), RS1000978635 (15:82809151 A>C), RS1001003350 (15:82821829 C>T), RS1001171085 (15:82812956 G>A,T)
Disease associations
OMIM: gene MIM:612393 | disease phenotypes:
GenCC curated gene-disease
Mondo (1): primary ovarian failure (MONDO:0005387)
Orphanet (1): NON RARE IN EUROPE: Primary ovarian failure (Orphanet:619)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST007277_21 | Tourette syndrome | 7.000000e-06 |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D016649 | Primary Ovarian Insufficiency | C12.050.351.500.056.630.750; C12.100.250.056.630.750; C19.391.630.750 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
42 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol A | decreases methylation, affects cotreatment, increases expression | 2 |
| Phenylmercuric Acetate | affects cotreatment, increases expression | 2 |
| Tobacco Smoke Pollution | increases expression | 2 |
| Valproic Acid | decreases methylation, increases expression | 2 |
| aristolochic acid I | increases expression | 1 |
| GSK-J4 | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | increases expression | 1 |
| sodium arsenite | increases expression | 1 |
| zinc chromate | increases abundance, increases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| chromium hexavalent ion | increases abundance, increases expression | 1 |
| cylindrospermopsin | increases expression | 1 |
| K 7174 | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| abrine | increases expression | 1 |
| dorsomorphin | affects cotreatment, increases expression | 1 |
| bisphenol S | affects cotreatment, increases expression | 1 |
| jinfukang | affects cotreatment, decreases expression | 1 |
| Sunitinib | increases expression | 1 |
| Zoledronic Acid | increases expression | 1 |
| Air Pollutants, Occupational | increases expression | 1 |
| Arsenic | decreases expression | 1 |
| Benzo(a)pyrene | decreases methylation | 1 |
| Caffeine | increases phosphorylation | 1 |
| Cisplatin | affects cotreatment, decreases expression | 1 |
| Dexamethasone | affects cotreatment, increases expression | 1 |
| Doxorubicin | decreases expression | 1 |
| Ethyl Methanesulfonate | increases expression | 1 |
| Formaldehyde | increases expression | 1 |
Cellosaurus cell lines
6 cell lines: 4 cancer cell line, 1 transformed cell line, 1 finite cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_IW09 | GM25245 | Transformed cell line | Female |
| CVCL_JF29 | GM25246 | Finite cell line | Female |
| CVCL_TX97 | HAP1 WHAMM (-) 1 | Cancer cell line | Male |
| CVCL_TX98 | HAP1 WHAMM (-) 2 | Cancer cell line | Male |
| CVCL_TX99 | HAP1 WHAMM (-) 3 | Cancer cell line | Male |
| CVCL_TY00 | HAP1 WHAMM (-) 4 | Cancer cell line | Male |
Clinical trials (associated diseases)
75 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00417066 | PHASE4 | COMPLETED | Flexible GnRH Antagonist vs Flare up GnRH Agonist Protocol in Poor Responders |
| NCT00732693 | PHASE4 | COMPLETED | Evaluation of Physiologic and Standard Sex Steroid Replacement Regimens in Women With Premature Ovarian Failure |
| NCT00837616 | PHASE4 | COMPLETED | Estrogen Dosing in Turner Syndrome: Pharmacology and Metabolism |
| NCT01853501 | PHASE4 | UNKNOWN | Effects of ADSC Therapy in Women With POF |
| NCT02783937 | PHASE4 | COMPLETED | Filgrastim for Premature Ovarian Insufficiency |
| NCT03535480 | PHASE4 | UNKNOWN | Autologous Bone Marrow Stem Cell Ovarian Transplantation to Restore Ovarian Function in Premature Ovarian Failure |
| NCT00140998 | PHASE3 | COMPLETED | Estrogen Treatment (Oral vs. Patches) in Turner Syndrome |
| NCT00001951 | PHASE2 | COMPLETED | Hormone Replacement in Young Women With Premature Ovarian Failure |
| NCT00370019 | PHASE2 | WITHDRAWN | Effects of an Estrogen Replacement Therapy Skin Patch on Ovulation in Women With Premature Ovarian Failure |
| NCT00429494 | PHASE2 | COMPLETED | GnRH Analogue for Ovarian Function Preservation in Hematopoietic Stem Cell Transplantation Patients |
| NCT03816852 | PHASE2 | SUSPENDED | The Safety and Efficiency Study of Mesenchymal Stem Cell (19#iSCLife®-POI) in Premature Ovarian Insufficiency |
| NCT04536467 | PHASE2 | UNKNOWN | Prevention of Chemotherapy-Induced Ovarian Failure With Goserelin in Premenopausal Lymphoma Patients |
| NCT06117982 | PHASE2 | COMPLETED | The Impact of Granulocyte Colony Stimulating Factor on Premature Ovarian Insufficiency |
| NCT02912104 | PHASE1 | COMPLETED | A Therapeutic Trial of Human Amniotic Epithelial Cells Transplantation for Primary Ovarian Failure |
| NCT03178695 | PHASE1 | COMPLETED | Inovium Ovarian Rejuvenation Trials |
| NCT04815213 | PHASE1 | ACTIVE_NOT_RECRUITING | The Use of Expandeded Mesenchymal Stromal Cells (MSC) in Premature Ovarian Failure (POF) in Adult Humans |
| NCT05138367 | PHASE1 | COMPLETED | Effects of UCA-PSCs in Women With POF |
| NCT06132542 | PHASE1 | UNKNOWN | Autologous ADMSC Transplantation in Patients With POI |
| NCT00948857 | PHASE2/PHASE3 | TERMINATED | Dehydroepiandrosterone (DHEA) Treatment and Premature Ovarian Failure (POF) |
| NCT04031456 | PHASE2/PHASE3 | RECRUITING | Autologous PRP Infusion May Restore Ovarian Function and May Promote Folliculogenesis in POI Patients |
| NCT02043743 | PHASE1/PHASE2 | UNKNOWN | Autologous Stem Cells Transplantation in Patients With Idiopathic and Drug Induced Premature Ovarian Failure |
| NCT02062931 | PHASE1/PHASE2 | UNKNOWN | Autologous Mesenchymal Stem Cells Transplantation In Women With Premature Ovarian Failure |
| NCT02151890 | PHASE1/PHASE2 | COMPLETED | Pregnancy After Stem Cell Transplantation in Premature Ovarian Failure |
| NCT02372474 | PHASE1/PHASE2 | COMPLETED | It is a Real The First Baby Of Autologous Stem Cell Therapy in Premature Ovarian Failure |
| NCT02603744 | PHASE1/PHASE2 | UNKNOWN | Autologous Adipose Derived Mesenchymal Stromal Cells Transplantation in Women With Premature Ovarian Failure (POF) |
| NCT02644447 | PHASE1/PHASE2 | COMPLETED | Transplantation of HUC-MSCs With Injectable Collagen Scaffold for POF |
| NCT03069209 | PHASE1/PHASE2 | UNKNOWN | Autologous Bone Marrow-Derived Stem Cell Transplantation in Patients With Premature Ovarian Failure (POF) |
| NCT03985462 | PHASE1/PHASE2 | WITHDRAWN | Very Small Embryonic-like Stem Cells for Ovary |
| NCT04009473 | PHASE1/PHASE2 | UNKNOWN | Stem Cell Therapy and Growth Factor Ovarian in Vitro Activation |
| NCT04071574 | PHASE1/PHASE2 | COMPLETED | Comparative Study on the Efficacy of Ovarian Stimulation Protocols on the Success Rate of ICSI in Female Infertility |
| NCT04922398 | PHASE1/PHASE2 | UNKNOWN | Ovarian Injection of PRP (Platelet -Rich Plasma) Vs Normal Saline in Premature Ovarian Insufficiency |
| NCT05462379 | PHASE1/PHASE2 | ACTIVE_NOT_RECRUITING | Autologous Heterotopic Fresh Ovarian Graft in Woman With LACC Eligible for Pelvic Radiotherapy Treatment. |
| NCT06202547 | PHASE1/PHASE2 | UNKNOWN | Intra-ovarian Injection of MSC-EVs in Idiopathic Premature Ovarian Failure |
| NCT01129947 | EARLY_PHASE1 | WITHDRAWN | The Use of DHEA in Women With Premature Ovarian Failure |
| NCT05522634 | EARLY_PHASE1 | UNKNOWN | A Clinical Study of Chinese Herbal Compound TJAOA101 in the Treatment of Premature Ovarian Insufficiency |
| NCT07308327 | EARLY_PHASE1 | ACTIVE_NOT_RECRUITING | The Influence of Gut Microbiota on Ovarian Function: A Single-center, Randomized,Double Blind, Parallel-controlled, Exploratory Clinical Trial |
| NCT00001275 | Not specified | COMPLETED | Ovarian Follicle Function in Patients With Primary Ovarian Failure |
| NCT00001306 | Not specified | COMPLETED | Steroid Therapy in Autoimmune Premature Ovarian Failure |
| NCT00006156 | Not specified | COMPLETED | Feasibility Study for Development of an Early Test for Ovarian Failure |
| NCT00119925 | Not specified | UNKNOWN | ‘SPRING’-Study: Subfertility Guidelines: Patient Related Implementation in the Netherlands Among Gynaecologists |
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.