WNT5A-AS1

Summary

WNT5A-AS1 (WNT5A antisense RNA 1, HGNC:40616) is a long non-coding RNA gene on chromosome 3p14.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:40616
Approved symbol	WNT5A-AS1
Name	WNT5A antisense RNA 1
Location	3p14.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000244586
Ensembl biotype	lncRNA
Entrez	100874008
RNAcentral	URS00026A239A — lncRNA, 581 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000469484

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000469484 — 2 exons

Exon	Start	End
ENSE00001810912	55487699	55487879
ENSE00001895831	55487990	55488308

Expression profiles

Bgee: expression breadth ubiquitous, 121 present calls, max score 93.54.

Top tissues by expression

121 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
stromal cell of endometrium	CL:0002255	93.54	gold quality
bone marrow cell	CL:0002092	80.89	gold quality
endometrium	UBERON:0001295	76.80	gold quality
esophagus mucosa	UBERON:0002469	73.44	gold quality
islet of Langerhans	UBERON:0000006	73.39	gold quality
smooth muscle tissue	UBERON:0001135	73.34	gold quality
lower esophagus mucosa	UBERON:0035834	73.12	gold quality
urinary bladder	UBERON:0001255	70.55	gold quality
colonic epithelium	UBERON:0000397	69.97	gold quality
tonsil	UBERON:0002372	69.97	gold quality
gall bladder	UBERON:0002110	68.80	gold quality
body of uterus	UBERON:0009853	66.86	gold quality
esophagus	UBERON:0001043	66.71	gold quality
vagina	UBERON:0000996	66.62	gold quality
hindlimb stylopod muscle	UBERON:0004252	66.35	gold quality
myometrium	UBERON:0001296	65.90	gold quality
fallopian tube	UBERON:0003889	65.81	gold quality
ventricular zone	UBERON:0003053	65.57	gold quality
placenta	UBERON:0001987	64.06	gold quality
vermiform appendix	UBERON:0001154	63.65	gold quality
left ovary	UBERON:0002119	63.60	gold quality
saliva-secreting gland	UBERON:0001044	63.33	gold quality
pancreas	UBERON:0001264	63.27	gold quality
ovary	UBERON:0000992	63.18	gold quality
right lung	UBERON:0002167	62.99	gold quality
uterine cervix	UBERON:0000002	62.21	gold quality
minor salivary gland	UBERON:0001830	62.12	gold quality
liver	UBERON:0002107	62.04	gold quality
ectocervix	UBERON:0012249	61.91	gold quality
lymph node	UBERON:0000029	61.64	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.76

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.