XIRP2
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Summary
XIRP2 (xin actin binding repeat containing 2, HGNC:14303) is a protein-coding gene on chromosome 2q24.3, encoding Xin actin-binding repeat-containing protein 2 (A4UGR9). Protects actin filaments from depolymerization.
Enables actin filament binding activity. Predicted to be involved in actin filament organization and regulation of actin filament organization. Predicted to act upstream of or within cardiac muscle tissue morphogenesis; cell-cell junction organization; and ventricular septum development. Located in focal adhesion and stress fiber. Implicated in depressive disorder.
Source: NCBI Gene 129446 — RefSeq curated summary.
At a glance
- GWAS associations: 5
- Clinical variants (ClinVar): 724 total
- Phenotypes (HPO): 1
- MANE Select transcript:
NM_152381
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:14303 |
| Approved symbol | XIRP2 |
| Name | xin actin binding repeat containing 2 |
| Location | 2q24.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000163092 |
| Ensembl biotype | protein_coding |
| OMIM | 609778 |
| Entrez | 129446 |
Gene structure
Transcript identifiers
Ensembl transcripts: 9 — 8 protein_coding, 1 retained_intron
ENST00000409043, ENST00000409195, ENST00000409273, ENST00000409605, ENST00000409728, ENST00000628543, ENST00000672277, ENST00000672671, ENST00000672716
RefSeq mRNA: 5 — MANE Select: NM_152381
NM_001079810, NM_001199143, NM_001199144, NM_001199145, NM_152381
CCDS: CCDS42768, CCDS42769, CCDS56143, CCDS56144, CCDS56145
Canonical transcript exons
ENST00000409195 — 11 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000000295 | 166888480 | 166888557 |
| ENSE00001276753 | 167242569 | 167251947 |
| ENSE00001299302 | 167135909 | 167136062 |
| ENSE00001300610 | 167239855 | 167239965 |
| ENSE00001317162 | 167241777 | 167241910 |
| ENSE00001320657 | 167240664 | 167240736 |
| ENSE00001324449 | 167218166 | 167218300 |
| ENSE00001580025 | 166903465 | 166903890 |
| ENSE00003591481 | 167210735 | 167210895 |
| ENSE00003607800 | 167254032 | 167254165 |
| ENSE00003901999 | 167257857 | 167259753 |
Expression profiles
Bgee: expression breadth ubiquitous, 150 present calls, max score 99.92.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 5.4002 / max 2598.6808, expressed in 77 samples.
FANTOM5 promoters (45 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 23450 | 3.6872 | 55 |
| 23449 | 0.3343 | 32 |
| 23494 | 0.1189 | 18 |
| 23490 | 0.1046 | 20 |
| 23480 | 0.0815 | 17 |
| 23472 | 0.0757 | 17 |
| 23498 | 0.0745 | 18 |
| 23482 | 0.0703 | 14 |
| 23477 | 0.0638 | 11 |
| 23481 | 0.0505 | 12 |
Top tissues by expression
256 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| deltoid | UBERON:0001476 | 99.92 | gold quality |
| biceps brachii | UBERON:0001507 | 99.86 | gold quality |
| quadriceps femoris | UBERON:0001377 | 99.85 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 99.85 | gold quality |
| vastus lateralis | UBERON:0001379 | 99.84 | gold quality |
| tibialis anterior | UBERON:0001385 | 99.84 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 99.82 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 99.69 | gold quality |
| left ventricle myocardium | UBERON:0006566 | 99.68 | gold quality |
| body of tongue | UBERON:0011876 | 99.48 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 99.45 | gold quality |
| heart right ventricle | UBERON:0002080 | 99.27 | gold quality |
| gastrocnemius | UBERON:0001388 | 99.26 | gold quality |
| myocardium | UBERON:0002349 | 98.25 | gold quality |
| apex of heart | UBERON:0002098 | 98.08 | gold quality |
| muscle organ | UBERON:0001630 | 97.90 | gold quality |
| skeletal muscle organ | UBERON:0014892 | 97.90 | gold quality |
| muscle of leg | UBERON:0001383 | 97.39 | gold quality |
| cardiac muscle of right atrium | UBERON:0003379 | 96.30 | gold quality |
| cardiac ventricle | UBERON:0002082 | 96.25 | gold quality |
| heart left ventricle | UBERON:0002084 | 96.18 | gold quality |
| tongue | UBERON:0001723 | 93.25 | gold quality |
| muscle tissue | UBERON:0002385 | 93.25 | gold quality |
| heart | UBERON:0000948 | 87.56 | gold quality |
| cardiac atrium | UBERON:0002081 | 86.37 | gold quality |
| right atrium auricular region | UBERON:0006631 | 85.72 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 84.33 | silver quality |
| superior surface of tongue | UBERON:0007371 | 83.95 | gold quality |
| pharyngeal mucosa | UBERON:0000355 | 82.44 | gold quality |
| larynx | UBERON:0001737 | 82.35 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-11268 | no | 1929.05 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): MEF2A
miRNA regulators (miRDB)
99 targeting XIRP2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4795-3P | 100.00 | 74.62 | 4024 |
| HSA-MIR-4789-3P | 99.99 | 70.75 | 2484 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
| HSA-MIR-570-3P | 99.96 | 72.41 | 4910 |
| HSA-MIR-590-3P | 99.96 | 74.34 | 6478 |
| HSA-MIR-3912-5P | 99.95 | 66.11 | 925 |
| HSA-MIR-23A-3P | 99.95 | 74.24 | 3163 |
| HSA-MIR-23B-3P | 99.95 | 74.24 | 3163 |
| HSA-MIR-23C | 99.95 | 73.92 | 3192 |
| HSA-MIR-767-5P | 99.95 | 70.85 | 993 |
| HSA-MIR-144-3P | 99.94 | 73.98 | 2698 |
| HSA-MIR-1236-3P | 99.94 | 68.04 | 1695 |
| HSA-MIR-335-3P | 99.93 | 73.36 | 4958 |
| HSA-MIR-4760-3P | 99.93 | 70.50 | 2385 |
| HSA-MIR-205-3P | 99.92 | 69.92 | 3165 |
| HSA-MIR-145-5P | 99.92 | 71.13 | 1836 |
| HSA-MIR-5195-3P | 99.92 | 70.92 | 1877 |
| HSA-MIR-589-3P | 99.91 | 69.62 | 2088 |
| HSA-MIR-374A-5P | 99.90 | 71.34 | 2923 |
| HSA-MIR-374B-5P | 99.90 | 69.98 | 2734 |
| HSA-MIR-106A-5P | 99.90 | 73.94 | 2683 |
| HSA-MIR-627-3P | 99.90 | 71.42 | 3316 |
| HSA-MIR-6499-3P | 99.90 | 66.38 | 1212 |
| HSA-MIR-153-5P | 99.89 | 73.86 | 6317 |
| HSA-MIR-17-5P | 99.89 | 73.83 | 2665 |
| HSA-MIR-106B-5P | 99.88 | 74.72 | 2795 |
| HSA-MIR-20B-5P | 99.88 | 74.01 | 2621 |
| HSA-MIR-519D-3P | 99.88 | 73.97 | 2607 |
| HSA-MIR-526B-3P | 99.88 | 74.06 | 2587 |
Literature-anchored findings (GeneRIF, showing 4)
- Xin and XIRP2 define a novel actin-binding motif (PMID:15454575)
- Genetic information from this patient implies that genes involved in development and maintenance of extraocular muscles can cause congenital ocular motility disorders as well. (PMID:24475916)
- A genome-wide association study reveals 2 new susceptibility loci for atopic dermatitis, XIRP2 and DMRTA1. (PMID:25865352)
- Report pathogenic XIRP1/2 rare variants in arrhythmogenic disorders such as sudden unexplained nocturnal death syndrome and Brugada syndrome. (PMID:29306897)
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Xirp2 | ENSMUSG00000027022 |
| rattus_norvegicus | Xirp2 | ENSRNOG00000034258 |
Paralogs (1): XIRP1 (ENSG00000168334)
Protein
Protein identifiers
Xin actin-binding repeat-containing protein 2 — A4UGR9 (reviewed: A4UGR9)
Alternative names: Beta-xin, Cardiomyopathy-associated protein 3, Xeplin
All UniProt accessions (3): A0A5F9ZH43, A0A5F9ZHW6, A4UGR9
UniProt curated annotations — full annotation on UniProt →
Function. Protects actin filaments from depolymerization. Required for correct morphology of cell membranes and maturation of intercalated disks of cardiomyocytes via facilitating localization of XIRP1 and CDH2 to the termini of aligned mature cardiomyocytes. Thereby required for correct postnatal heart development and growth regulation that is crucial for overall heart morphology and diastolic function. Required for normal electrical conduction in the heart including formation of the infranodal ventricular conduction system and normal action potential configuration, as a result of its interaction with the cardiac ion channel components Scn5a/Nav1.5 and Kcna5/Kv1.5. Required for regular actin filament spacing of the paracrystalline array in both inner and outer hair cells of the cochlea, thereby required for maintenance of stereocilia morphology.
Subunit / interactions. Interacts with ACTN2. Interacts with F-actin. Interacts with NEBL (via SH3 domain). Interacts with Kcna5/Kv1.5 and Scn5a/Nav1.5; the interactions are required for normal action potential configuration in the heart.
Subcellular location. Cell junction.
Tissue specificity. Expressed in skeletal muscle at areas of Z-disk disruption in a longitudinal pattern spanning one or more sarcomeres (at protein level). Weakly expressed in mature myofibrils (at protein level). Expressed in the blood.
Domain organisation. Xin repeats bind F-actin.
Miscellaneous. ‘Xin’ means ‘heart’ in Chinese.
Similarity. Belongs to the Xin family.
Isoforms (8)
| UniProt ID | Names | Canonical? |
|---|---|---|
| A4UGR9-1 | 1 | yes |
| A4UGR9-2 | 2 | |
| A4UGR9-3 | 3 | |
| A4UGR9-4 | 4 | |
| A4UGR9-5 | 5 | |
| A4UGR9-6 | 6 | |
| A4UGR9-7 | 7 | |
| A4UGR9-8 | 8 |
RefSeq proteins (5): NP_001073278, NP_001186072, NP_001186073, NP_001186074, NP_689594* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR012510 | Actin-binding_Xin_repeat | Repeat |
| IPR030072 | XIRP1/XIRP2 | Family |
Pfam: PF08043
UniProt features (123 total): sequence variant 32, repeat 28, sequence conflict 17, compositionally biased region 15, modified residue 11, region of interest 8, splice variant 7, coiled-coil region 4, chain 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 4F14 | X-RAY DIFFRACTION | 1.2 |
Predicted structure (AlphaFold)
No AlphaFold model available for A4UGR9 — AlphaFold DB does not currently provide models for proteins above ~3000 aa.
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (11): 621, 868, 1265, 1629, 1989, 1994, 2222, 2276, 2318, 3059, 3297
Function
Pathways and Gene Ontology
Reactome pathways
2 pathways
| ID | Pathway |
|---|---|
| R-HSA-9662360 | Sensory processing of sound by inner hair cells of the cochlea |
| R-HSA-9662361 | Sensory processing of sound by outer hair cells of the cochlea |
MSigDB gene sets: 97 (showing top):
GOBP_CARDIAC_CHAMBER_DEVELOPMENT, LI_CISPLATIN_RESISTANCE_DN, GOBP_MUSCLE_TISSUE_DEVELOPMENT, GOBP_CARDIAC_SEPTUM_DEVELOPMENT, GOBP_POSITIVE_REGULATION_OF_PROTEIN_LOCALIZATION, GOBP_REGULATION_OF_ACTIN_FILAMENT_BASED_PROCESS, GOBP_ANIMAL_ORGAN_MORPHOGENESIS, GOBP_CELL_JUNCTION_ORGANIZATION, GOBP_MUSCLE_STRUCTURE_DEVELOPMENT, GOBP_HEART_MORPHOGENESIS, GOBP_ACTIN_FILAMENT_ORGANIZATION, chr2q24, GOBP_CARDIAC_MUSCLE_TISSUE_MORPHOGENESIS, GOBP_MUSCLE_ORGAN_MORPHOGENESIS, GOBP_CARDIAC_VENTRICLE_DEVELOPMENT
GO Biological Process (7): ventricular septum development (GO:0003281), actin filament organization (GO:0007015), cell-cell junction organization (GO:0045216), cardiac muscle tissue morphogenesis (GO:0055008), regulation of actin filament organization (GO:0110053), positive regulation of protein localization (GO:1903829), actin cytoskeleton organization (GO:0030036)
GO Molecular Function (5): actin filament binding (GO:0051015), alpha-actinin binding (GO:0051393), actin binding (GO:0003779), protein binding (GO:0005515), metal ion binding (GO:0046872)
GO Cellular Component (6): cell-cell junction (GO:0005911), Z disc (GO:0030018), stress fiber (GO:0001725), focal adhesion (GO:0005925), cell junction (GO:0030054), anchoring junction (GO:0070161)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Sensory processing of sound | 2 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 2 |
| cardiac ventricle development | 1 |
| cardiac septum development | 1 |
| actin cytoskeleton organization | 1 |
| supramolecular fiber organization | 1 |
| cell junction organization | 1 |
| heart morphogenesis | 1 |
| cardiac muscle tissue development | 1 |
| muscle tissue morphogenesis | 1 |
| actin filament organization | 1 |
| regulation of actin cytoskeleton organization | 1 |
| regulation of supramolecular fiber organization | 1 |
| intracellular protein localization | 1 |
| regulation of protein localization | 1 |
| positive regulation of biological process | 1 |
| cytoskeleton organization | 1 |
| actin filament-based process | 1 |
| actin binding | 1 |
| protein-containing complex binding | 1 |
| actinin binding | 1 |
| cytoskeletal protein binding | 1 |
| binding | 1 |
| cation binding | 1 |
| anchoring junction | 1 |
| I band | 1 |
| actomyosin | 1 |
| contractile actin filament bundle | 1 |
| cell-substrate junction | 1 |
| cell junction | 1 |
Protein interactions and networks
STRING
1658 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| XIRP2 | MEF2A | Q02078 | 753 |
| XIRP2 | ACTN2 | P35609 | 725 |
| XIRP2 | NEBL | O76041 | 631 |
| XIRP2 | CSMD3 | Q7Z407 | 605 |
| XIRP2 | LRP1B | Q9NZR2 | 576 |
| XIRP2 | USH2A | O75445 | 547 |
| XIRP2 | ZFHX4 | Q86UP3 | 544 |
| XIRP2 | TTN | Q8WZ42 | 537 |
| XIRP2 | MUC16 | Q8WXI7 | 510 |
| XIRP2 | RYR2 | Q92736 | 491 |
| XIRP2 | PKHD1L1 | Q86WI1 | 486 |
| XIRP2 | PCLO | Q9Y6V0 | 482 |
| XIRP2 | NAV3 | Q8IVL0 | 470 |
| XIRP2 | CNBD1 | Q8NA66 | 467 |
| XIRP2 | SPTA1 | P02549 | 459 |
IntAct
29 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| XIRP2 | NEBL | psi-mi:“MI:0915”(physical association) | 0.670 |
| NEBL | XIRP2 | psi-mi:“MI:0407”(direct interaction) | 0.670 |
| XIRP2 | NEBL | psi-mi:“MI:0407”(direct interaction) | 0.670 |
| XIRP2 | NEB | psi-mi:“MI:0915”(physical association) | 0.600 |
| XIRP2 | NEB | psi-mi:“MI:0407”(direct interaction) | 0.600 |
| NEB | XIRP2 | psi-mi:“MI:0407”(direct interaction) | 0.600 |
| VASP | XIRP2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| XIRP2 | LRRK2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| XIRP2 | PNPT1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| XIRP2 | H2BC9 | psi-mi:“MI:0915”(physical association) | 0.400 |
| XIRP2 | H1-5 | psi-mi:“MI:0915”(physical association) | 0.400 |
| XIRP2 | H1-4 | psi-mi:“MI:0915”(physical association) | 0.400 |
| TTK | XIRP2 | psi-mi:“MI:0915”(physical association) | 0.400 |
| PCNA | XIRP2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| CRY1 | IGKV2D-30 | psi-mi:“MI:0914”(association) | 0.350 |
| NSMAF | XIRP2 | psi-mi:“MI:0914”(association) | 0.350 |
| DYRK1A | TEX13D | psi-mi:“MI:0914”(association) | 0.350 |
| PDE3A | TMEM131L | psi-mi:“MI:0914”(association) | 0.350 |
| XIRP2 | ATE1 | psi-mi:“MI:0914”(association) | 0.350 |
| AKT1 | XIRP2 | psi-mi:“MI:2364”(proximity) | 0.270 |
| BRAF | XIRP2 | psi-mi:“MI:2364”(proximity) | 0.270 |
| FBXW7 | XIRP2 | psi-mi:“MI:2364”(proximity) | 0.270 |
| SMAD4 | XIRP2 | psi-mi:“MI:2364”(proximity) | 0.270 |
| XIRP2 | DYSF | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (48): XIRP2 (Reconstituted Complex), HIST1H1E (Proximity Label-MS), PNPT1 (Proximity Label-MS), HIST1H1B (Proximity Label-MS), HIST1H2BH (Proximity Label-MS), XIRP2 (Two-hybrid), XIRP2 (Affinity Capture-MS), XIRP2 (Affinity Capture-MS), HECW2 (Affinity Capture-MS), XIRP2 (Affinity Capture-MS), ATE1 (Affinity Capture-MS), NEDD4L (Affinity Capture-MS), BAG3 (Affinity Capture-MS), XIRP2 (Affinity Capture-MS), DIS3 (Affinity Capture-MS)
ESM2 similar proteins: A0MZ66, A0MZ67, A2APB8, A4IH24, A4UGR9, A6H6Z7, A9JRM0, D4A702, E7F7X0, O35867, O60566, P13505, P14317, P49710, Q14247, Q1LVV0, Q28IH8, Q2MJV9, Q3B820, Q3MHH7, Q4KM62, Q4R6Q9, Q4U4S6, Q5E9V3, Q5NVK0, Q5PZ43, Q5R6I2, Q5RAF2, Q60598, Q66HL2, Q66KE9, Q6AYN9, Q6DDV8, Q6DFB7, Q6NUF4, Q6P0R8, Q6ZUJ8, Q71LX6, Q7T0S7, Q80ZU5
Diamond homologs: A4UGR9, Q4U4S6, Q5PZ43, Q71LX6, Q91957, O70373, Q702N8, B0KYV5, D4A1F2, E7F9T0, F1LR10, F1MF74, F1MH07, F1QH17, F1QWK4, F1RA39, F6QZ15, G3MWR8, O04193, O60952, O80839, O94851, P29675, Q0VFX8, Q1ECF5, Q1LZA7, Q4KM31, Q500W4, Q7F9R9, Q7RTP6, Q86BA1, Q8BGB5, Q8BML1, Q8CJ19, Q94JX5, Q9BIW4, Q9BT23, Q9ERG0, Q9M047, Q9UHB6
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
724 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 522 |
| Likely benign | 100 |
| Benign | 73 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
3387 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 2:167135904:AACAG:A | acceptor_gain | 1.0000 |
| 2:167135906:CA:C | acceptor_loss | 1.0000 |
| 2:167135908:GGAA:G | acceptor_gain | 1.0000 |
| 2:167136058:TGAAG:T | donor_loss | 1.0000 |
| 2:167136059:GAAGG:G | donor_loss | 1.0000 |
| 2:167136060:AAGG:A | donor_loss | 1.0000 |
| 2:167136061:AGGTT:A | donor_loss | 1.0000 |
| 2:167136063:GTTA:G | donor_loss | 1.0000 |
| 2:167181606:G:GT | donor_gain | 1.0000 |
| 2:167183129:G:T | donor_gain | 1.0000 |
| 2:167210730:TTCA:T | acceptor_loss | 1.0000 |
| 2:167210731:TCAG:T | acceptor_loss | 1.0000 |
| 2:167210733:A:AG | acceptor_gain | 1.0000 |
| 2:167210733:AGC:A | acceptor_gain | 1.0000 |
| 2:167210734:G:GA | acceptor_gain | 1.0000 |
| 2:167210734:G:GT | acceptor_loss | 1.0000 |
| 2:167210734:GC:G | acceptor_gain | 1.0000 |
| 2:167210734:GCG:G | acceptor_gain | 1.0000 |
| 2:167210734:GCGA:G | acceptor_gain | 1.0000 |
| 2:167210734:GCGAC:G | acceptor_gain | 1.0000 |
| 2:167210894:AT:A | donor_gain | 1.0000 |
| 2:167210894:ATGT:A | donor_loss | 1.0000 |
| 2:167210896:G:GA | donor_loss | 1.0000 |
| 2:167210896:G:GG | donor_gain | 1.0000 |
| 2:167210897:TAA:T | donor_loss | 1.0000 |
| 2:167218155:A:G | acceptor_gain | 1.0000 |
| 2:167218164:AGAT:A | acceptor_gain | 1.0000 |
| 2:167218165:GATG:G | acceptor_gain | 1.0000 |
| 2:167239927:TCCA:T | donor_gain | 1.0000 |
| 2:167240656:A:AG | acceptor_gain | 1.0000 |
AlphaMissense
0 scored. Top likely-pathogenic:
dbSNP variants (sampled 300 via entrez): RS1000008529 (2:167127251 G>C), RS1000012283 (2:167204022 G>A), RS1000030351 (2:166998021 T>G), RS1000031606 (2:166913048 G>A,T), RS1000051088 (2:167015415 C>T), RS1000062109 (2:167037312 A>C,G), RS1000063555 (2:166960159 T>C), RS1000068900 (2:167165756 C>A,T), RS1000086602 (2:166958432 C>T), RS1000095248 (2:166889160 T>C,G), RS1000119477 (2:166956746 G>A), RS1000123184 (2:167086606 A>T), RS1000126980 (2:166971637 G>A,C), RS1000128039 (2:167160491 G>A), RS1000135672 (2:167036228 C>A)
Disease associations
OMIM: gene MIM:609778 | disease phenotypes: MIM:615779
GenCC curated gene-disease
Mondo (2): blepharophimosis (MONDO:0001008), congenital heart defects, multiple types, 4 (MONDO:0014344)
Orphanet (0):
HPO phenotypes
1 total (1 of 1 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000581 | Blepharophimosis |
GWAS associations
5 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST002844_2 | Atopic dermatitis | 4.000000e-08 |
| GCST006043_2 | Plasma renin activity levels | 2.000000e-07 |
| GCST008223_1 | Diabetic peripheral neuropathy in type 2 diabetes | 8.000000e-12 |
| GCST010396_154 | Gut microbiota (bacterial taxa, hurdle binary method) | 2.000000e-06 |
| GCST011743_84 | HDL cholesterol levels in HIV infection | 3.000000e-06 |
EFO canonical traits (3, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0006828 | plasma renin activity measurement |
| EFO:0007874 | gut microbiome measurement |
| EFO:0004612 | high density lipoprotein cholesterol measurement |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D016569 | Blepharophimosis | C11.250.090; C11.338.190; C16.131.384.190 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB clinical annotations
1 annotations.
| Variant | Type | Level | Drugs | Phenotypes |
|---|---|---|---|---|
| rs7606603 | Efficacy | 3 | atenolol | Hypertension |
PharmGKB variants
1 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs7606603 | XIRP2 | 3 | 2.25 | 1 | atenolol |
CTD chemical–gene interactions
23 total (human), top 23 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol A | affects cotreatment, increases methylation, decreases expression, decreases methylation | 2 |
| Benzo(a)pyrene | increases expression, decreases methylation | 2 |
| Doxorubicin | decreases expression | 2 |
| Valproic Acid | decreases methylation, increases expression | 2 |
| 2,4,6-tribromophenol | decreases expression | 1 |
| decabromobiphenyl ether | decreases expression | 1 |
| tetrabromobisphenol A | decreases expression | 1 |
| coumarin | increases phosphorylation | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| 2,2’,4,4’-tetrabromodiphenyl ether | decreases expression | 1 |
| pentabrominated diphenyl ether 100 | decreases expression | 1 |
| hexabrominated diphenyl ether 153 | decreases expression | 1 |
| bisphenol S | increases expression | 1 |
| Sunitinib | decreases expression | 1 |
| Fulvestrant | affects cotreatment, increases methylation | 1 |
| Benztropine | decreases expression | 1 |
| Ethyl Methanesulfonate | decreases expression | 1 |
| Formaldehyde | decreases expression | 1 |
| Haloperidol | decreases expression | 1 |
| Methyl Methanesulfonate | decreases expression | 1 |
| Oxygen | increases expression | 1 |
| Phthalic Acids | increases methylation | 1 |
| Vincristine | decreases expression | 1 |
Clinical trials (associated diseases)
1 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT06514612 | PHASE3 | RECRUITING | LIDRISE Study: A Phase 3 Study on the Efficacy and Safety of STN1013800 (Oxymetazoline HCl 0.1% Eye Drops, Single Dose) in the Treatment of Acquired Blepharoptosis. |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): atopic eczema, blepharophimosis, congenital heart defects, multiple types, 4, peripheral neuropathy