YPEL3-DT

Summary

YPEL3-DT (YPEL3 divergent transcript, HGNC:55547) is a long non-coding RNA gene on chromosome 16p11.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55547
Approved symbol	YPEL3-DT
Name	YPEL3 divergent transcript
Location	16p11.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000250616
Ensembl biotype	lncRNA
Entrez	101928595
RNAcentral	URS00009B123E — lncRNA, 2990 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000515455, ENST00000693600

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000515455 — 2 exons

Exon	Start	End
ENSE00003985800	30103457	30105193
ENSE00004139748	30096363	30097419

Expression profiles

Bgee: expression breadth ubiquitous, 182 present calls, max score 88.83.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 2.8012 / max 419.6683, expressed in 115 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
153624	2.8012	115

Top tissues by expression

228 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
tendon of biceps brachii	UBERON:0008188	88.83	silver quality
buccal mucosa cell	CL:0002336	87.15	silver quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	84.82	gold quality
blood	UBERON:0000178	77.86	gold quality
sperm	CL:0000019	76.42	gold quality
oviduct epithelium	UBERON:0004804	75.52	gold quality
cortical plate	UBERON:0005343	72.49	gold quality
prefrontal cortex	UBERON:0000451	72.47	gold quality
nasal cavity epithelium	UBERON:0005384	71.80	silver quality
Brodmann (1909) area 9	UBERON:0013540	70.94	gold quality
cerebellar hemisphere	UBERON:0002245	70.86	gold quality
cerebellar cortex	UBERON:0002129	70.81	gold quality
right hemisphere of cerebellum	UBERON:0014890	70.75	gold quality
bone marrow cell	CL:0002092	70.52	silver quality
right frontal lobe	UBERON:0002810	70.42	gold quality
cerebellum	UBERON:0002037	70.20	gold quality
ganglionic eminence	UBERON:0004023	70.01	gold quality
epithelium of nasopharynx	UBERON:0001951	69.98	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	69.95	gold quality
anterior cingulate cortex	UBERON:0009835	69.61	gold quality
ventricular zone	UBERON:0003053	69.58	gold quality
frontal cortex	UBERON:0001870	69.35	gold quality
spinal cord	UBERON:0002240	69.31	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	69.31	gold quality
neocortex	UBERON:0001950	69.27	gold quality
gastrocnemius	UBERON:0001388	68.82	gold quality
mucosa of stomach	UBERON:0001199	68.73	gold quality
amygdala	UBERON:0001876	68.53	gold quality
putamen	UBERON:0001874	68.50	gold quality
islet of Langerhans	UBERON:0000006	68.43	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.22

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.