YWHAE
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Also known as FLJ45465
Summary
YWHAE (tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon, HGNC:12851) is a protein-coding gene on chromosome 17p13.3, encoding 14-3-3 protein epsilon (P62258). Adapter protein implicated in the regulation of a large spectrum of both general and specialized signaling pathways. It is a selective cancer dependency (DepMap: 33.6% of cell lines).
This gene product belongs to the 14-3-3 family of proteins which mediate signal transduction by binding to phosphoserine-containing proteins. This highly conserved protein family is found in both plants and mammals, and this protein is 100% identical to the mouse ortholog. It interacts with CDC25 phosphatases, RAF1 and IRS1 proteins, suggesting its role in diverse biochemical activities related to signal transduction, such as cell division and regulation of insulin sensitivity. It has also been implicated in the pathogenesis of small cell lung cancer. Two transcript variants, one protein-coding and the other non-protein-coding, have been found for this gene.
Source: NCBI Gene 7531 — RefSeq curated summary.
At a glance
- Gene–disease (curated): neurodevelopmental disorder (Strong, GenCC) — +1 more curated relationship
- GWAS associations: 11
- Clinical variants (ClinVar): 101 total — 2 pathogenic, 3 likely-pathogenic
- Phenotypes (HPO): 33
- Druggable target: yes
- Cancer dependency (DepMap): dependent in 33.6% of screened cell lines
- Dosage sensitivity (ClinGen): haploinsufficiency little evidence, triplosensitivity no evidence
- MANE Select transcript:
NM_006761
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:12851 |
| Approved symbol | YWHAE |
| Name | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon |
| Location | 17p13.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ45465 |
| Ensembl gene | ENSG00000108953 |
| Ensembl biotype | protein_coding |
| OMIM | 605066 |
| Entrez | 7531 |
Gene structure
Transcript identifiers
Ensembl transcripts: 19 — 11 protein_coding, 4 retained_intron, 2 nonsense_mediated_decay, 2 protein_coding_CDS_not_defined
ENST00000264335, ENST00000466227, ENST00000469398, ENST00000486241, ENST00000489287, ENST00000496706, ENST00000498643, ENST00000571732, ENST00000572108, ENST00000573026, ENST00000573196, ENST00000575977, ENST00000576854, ENST00000928923, ENST00000928924, ENST00000928925, ENST00000928926, ENST00000928927, ENST00000946803
RefSeq mRNA: 1 — MANE Select: NM_006761
NM_006761
CCDS: CCDS11001
Canonical transcript exons
ENST00000264335 — 6 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001299180 | 1361092 | 1361298 |
| ENSE00001858423 | 1344275 | 1345499 |
| ENSE00002394042 | 1361902 | 1362008 |
| ENSE00002683090 | 1400047 | 1400222 |
| ENSE00003463905 | 1354211 | 1354347 |
| ENSE00003621688 | 1364859 | 1365058 |
Expression profiles
Bgee: expression breadth ubiquitous, 155 present calls, max score 99.87.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 425.7423 / max 10564.2601, expressed in 1828 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 163704 | 425.7423 | 1828 |
Top tissues by expression
155 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| superior frontal gyrus | UBERON:0002661 | 99.87 | gold quality |
| ventricular zone | UBERON:0003053 | 99.85 | gold quality |
| cortical plate | UBERON:0005343 | 99.82 | gold quality |
| primary visual cortex | UBERON:0002436 | 99.81 | gold quality |
| prefrontal cortex | UBERON:0000451 | 99.80 | gold quality |
| ganglionic eminence | UBERON:0004023 | 99.78 | gold quality |
| embryo | UBERON:0000922 | 99.77 | gold quality |
| frontal cortex | UBERON:0001870 | 99.76 | gold quality |
| frontal lobe | UBERON:0016525 | 99.76 | gold quality |
| corpus callosum | UBERON:0002336 | 99.75 | gold quality |
| cerebral cortex | UBERON:0000956 | 99.74 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 99.73 | gold quality |
| temporal lobe | UBERON:0001871 | 99.72 | gold quality |
| amygdala | UBERON:0001876 | 99.72 | gold quality |
| telencephalon | UBERON:0001893 | 99.72 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 99.72 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 99.71 | gold quality |
| caudate nucleus | UBERON:0001873 | 99.70 | gold quality |
| hypothalamus | UBERON:0001898 | 99.70 | gold quality |
| Ammon’s horn | UBERON:0001954 | 99.70 | gold quality |
| nucleus accumbens | UBERON:0001882 | 99.69 | gold quality |
| right frontal lobe | UBERON:0002810 | 99.69 | gold quality |
| brain | UBERON:0000955 | 99.68 | gold quality |
| putamen | UBERON:0001874 | 99.68 | gold quality |
| substantia nigra | UBERON:0002038 | 99.64 | gold quality |
| spinal cord | UBERON:0002240 | 99.64 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 99.64 | gold quality |
| cerebellum | UBERON:0002037 | 99.62 | gold quality |
| cerebellar cortex | UBERON:0002129 | 99.62 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 99.62 | gold quality |
Single-cell (SCXA)
Detected in 7 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-4 | yes | 144.52 |
| E-ENAD-21 | no | 1259.88 |
| E-CURD-7 | no | 1252.09 |
| E-GEOD-81608 | no | 1098.79 |
| E-MTAB-5061 | no | 546.27 |
| E-HCAD-10 | no | 37.17 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): CEBPB, CEBPG, MYC, PPARD, PPARG
miRNA regulators (miRDB)
136 targeting YWHAE, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4668-3P | 100.00 | 68.74 | 2635 |
| HSA-MIR-4747-5P | 100.00 | 67.90 | 2681 |
| HSA-MIR-5196-5P | 100.00 | 67.98 | 2761 |
| HSA-MIR-12118 | 100.00 | 65.88 | 1270 |
| HSA-MIR-3064-3P | 100.00 | 70.09 | 1254 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-4789-3P | 99.99 | 70.75 | 2484 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-MIR-186-5P | 99.99 | 70.83 | 3707 |
| HSA-MIR-3173-3P | 99.98 | 66.49 | 1217 |
| HSA-MIR-6891-5P | 99.98 | 66.53 | 1372 |
| HSA-MIR-8068 | 99.98 | 73.85 | 2376 |
| HSA-MIR-548P | 99.98 | 72.25 | 3784 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-6825-5P | 99.96 | 69.81 | 3431 |
| HSA-MIR-548AA | 99.96 | 70.64 | 3753 |
| HSA-MIR-548AP-3P | 99.96 | 70.64 | 3753 |
| HSA-MIR-548T-3P | 99.96 | 70.64 | 3753 |
| HSA-MIR-3658 | 99.96 | 73.87 | 4379 |
| HSA-MIR-570-3P | 99.96 | 72.41 | 4910 |
| HSA-MIR-545-3P | 99.95 | 70.74 | 2783 |
| HSA-MIR-6721-5P | 99.93 | 68.92 | 2981 |
| HSA-MIR-3119 | 99.92 | 71.34 | 2390 |
| HSA-MIR-6809-3P | 99.91 | 71.45 | 3814 |
| HSA-MIR-1297 | 99.91 | 73.41 | 3162 |
| HSA-MIR-4753-3P | 99.90 | 71.03 | 3786 |
| HSA-MIR-153-5P | 99.89 | 73.86 | 6317 |
| HSA-MIR-30A-3P | 99.87 | 69.74 | 2928 |
| HSA-MIR-30D-3P | 99.87 | 69.92 | 2917 |
| HSA-MIR-30E-3P | 99.87 | 69.68 | 2942 |
Functional genomics
ClinGen dosage: haploinsufficiency 1 (little evidence), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
DepMap (CRISPR cell-line fitness): dependent in 33.6% of screened cell lines.
Literature-anchored findings (GeneRIF, showing 40)
- Identification of frequent G(2) checkpoint impairment and a homozygous deletion of 14-3-3epsilon at 17p13.3 in small cell lung cancers. (PMID:11782387)
- study suggests that the cleavage of 14-3-3 protein during apoptosis promotes cell death by releasing the associated Bad protein from the 14-3-3 protein and facilitates Bad translocation to the mitochondria and its interaction with Bcl-x(L) (PMID:12657644)
- HSF1 binding to 14-3-3 epsilon requires HSF1 phosphorylation on serines 303 and 307, the serine phosphorylation-dependent binding of HSF1 to 14-3-3 epsilon results in the transcriptional repression of HSF1 and its sequestration in the cytoplasm. (PMID:12917326)
- 14-3-3 adapter proteins may have a role in regulating CD81 signaling, possibly dependent on cellular redox (PMID:14966136)
- HSF1 associates with ERK1 and 14-3-3epsilon during heat shock to modulate the amplitude of the response and lead to efficient termination of HSP expression on resumption of growth conditions (PMID:15364926)
- there is a phosphorylation-regulated complex formation of Grb10 with 14-3-3 and Akt (PMID:15722337)
- 14-3-3 epsilon is a potential suicide susceptibility gene and implies that dysregulation of neurogenesis may be involved in suicide. (PMID:15838597)
- plasma membrane Na+/Ca2+ exchangers have inhibitory interactions with the 14-3-3 proteins (PMID:16679322)
- Upon co-expression with 14-3-3epsilon, mutant HERG channels still bound 14-3-3epsilon but did not respond with a hyperpolarizing shift in voltage dependence as seen in wild-type channels. (PMID:16923798)
- These results indicate that the epsilon isoform of 14-3-3 is a component of PrP amyloid deposits of GSS and suggest that this is the sole 14-3-3 isoform specifically involved in the neuropathologic changes associated with this disorder. (PMID:17278997)
- 14-3-3, a cruciform DNA binding protein, associates with yeast origins of replication and functions as an initiator of DNA replication (PMID:17430600)
- These results suggest that 14-3-3epsilon bound to MK5 inhibits cell migration by inhibiting the phosphorylation of HSP27 whose phosphorylation regulates F-actin polymerization, actin cytoskeleton organization and subsequent actinfilament dynamics. (PMID:17728103)
- 14-3-3epsilon and 14-3-3zeta are identified as Cby-binding partners. (PMID:18573912)
- YWHAE is a possible susceptibility gene that functions protectively in schizophrenia. (PMID:18658164)
- changes in the expression of five 14-3-3 isoforms (beta, gamma, epsilon, tau, and zeta) during the apoptosis of JURL-MK1 and K562 cells. (PMID:19173300)
- 14-3-3beta, 14-3-3gamma, 14-3-3epsilon, 14-3-3eta and 14-3-3theta isoforms interact with the GPIb-IX complex in platelets (PMID:19558434)
- Microdeletions on chromosome 17p13.3 present with growth retardaion, craniofacial dysmorphisms, structural abnormalities of the brain, and cognitive impairmant. (PMID:19584063)
- In one patient presenting with periventricular nodular heterotopias and pronounced corpus callosum hypoplasia, a small (400 kb) 17p13.3 deletion involving the YWHAE gene was identified. (PMID:19635726)
- Data suggest a novel mechanism in which PKA down-regulates Hedgehog signaling by promoting the interaction between 14-3-3 and Gli as well as proteolysis. (PMID:19996099)
- The 14-3-3 epsilon, zeta and theta may be involved in tumorigenesis of meningioma and be efficient markers for predicting the degree of malignancy in meningioma. (PMID:20388496)
- the identification of a novel splicing variant of human 14-3-3 epsilon (14-3-3 epsilon sv), derived from a novel exon 1’ insertion is reported. (PMID:20417184)
- For the first time, we found that TNF-alpha stimulation enhances the interactions between 14-3-3 epsilon and some key components in the mitogen-activated protein kinase (MAPK) signal module which is located at the immediate upstream of NF-kappaB. (PMID:20462248)
- Decreased expression of 14-3-3epsilon in contributes to the initiation and progression of laryngeal carcinoma by affecting apoptosis and invasion. (PMID:20565895)
- YWHAE does not play a major role in schizophrenia, major depressive disorder or bipolar disorder in the Han Chinese populatio (PMID:21184166)
- Results suggest that ERK and p38 MAPK regulate subcellular localization of Prdx6 by activation of 14-3-3epsilon as a chaperone protein, resulting in its translocation to acidic organelles. (PMID:21346153)
- Overexpression of 14-3-3epsilon predicts tumour metastasis and poor survival in hepatocellular carcinoma (PMID:21401702)
- Data suggest a regulatory circuitry involving Smad4 dependent up-regulation of KRT23 (directly or indirectly) which in turn modulates the interaction between KRT23 and 14-3-3epsilon leading to a cytoplasmic sequestration of 14-3-3epsilon. (PMID:21492476)
- Analyses show that high cytoplasmic levels of 14-3-3beta and epsilon independently correlate with poor disease-specific survival in vulvar squamous cell carcinoma cases. (PMID:21935479)
- Data present the high-resolution crystal structure of this binding motif [MLF1(29-42)pSer34] in complex with 14-3-3epsilon and analyse the interaction with isothermal titration calorimetry. (PMID:22151054)
- Fluorescence in situ hybridization analysis demonstrated absolute specificity of YWHAE-FAM22A/B genetic rearrangement for high-grade endometrial stromal sarcoma. (PMID:22223660)
- Collectively, these results identify a novel locus of apoptosomal regulation wherein MAPK signalling promotes Rsk-catalysed Apaf-1 phosphorylation and consequent binding of 14-3-3varepsilon, resulting in decreased cellular responsiveness to cytochrome c. (PMID:22246185)
- Tumors with YWHAE-FAM22 rearrangements constitute a distinct group of endometrial stromal sarcoma (ESS), which is associated with high-grade morphology and aggressive clinical behavior compared to JAZF1 ESS. (PMID:22456610)
- Data obtained, which have never previously been reported, were used to modify the published 14-3-3 crystal structure using molecular modeling. (PMID:22580067)
- 14-3-3epsilon is essential for the stable interaction of RIG-I with TRIM25, which facilitates RIG-I ubiquitination and initiation of innate immunity against hepatitis C virus and other pathogenic RNA viruses. (PMID:22607805)
- results indicate that the dosage effect of YWHAE varies from severe to very mild structural brain abnormalities, and suggest that the expression of YWHAE is associated with a complex mechanism of neuronal development (PMID:22887762)
- The ERK/MAPK pathway is involved in the pathogenesis of gastric cancer; RKIP and 14-3-3epsilon exert an opposite effect on this pathway and the cells possibly via both direct and indirect reactions with the elements in this pathway. (PMID:22899242)
- findings suggest that FAK expression is correlated with and upregulated by 14-3-3epsilon via activation of NFkappaB (PMID:22934705)
- When evaluating high-grade uterine sarcomas, cyclin D1 can be included in the immuno-histochemical panel as an indicator of YWHAE-FAM22endometrial stromal sarcoma. (PMID:22982899)
- These results showed that IgE is produced during malaria, and that the negative correlation between levels of IgE to 14-3-3 epsilon protein and parasitemia in asymptomatic malaria supports a role for these IgE molecules in defense mechanisms. (PMID:22984113)
- YWHAE gene contribute to the phenotype of small 17p13.3 chromosomal duplication in Miller-Dieker syndrome (PMID:23035971)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | ywhae1 | ENSDARG00000006399 |
| mus_musculus | Ywhae | ENSMUSG00000020849 |
| rattus_norvegicus | Ywhae | ENSRNOG00000005290 |
| drosophila_melanogaster | 14-3-3epsilon | FBGN0020238 |
| caenorhabditis_elegans | WBGENE00010919 |
Paralogs (6): YWHAH (ENSG00000128245), YWHAQ (ENSG00000134308), YWHAZ (ENSG00000164924), YWHAB (ENSG00000166913), YWHAG (ENSG00000170027), SFN (ENSG00000175793)
Protein
Protein identifiers
14-3-3 protein epsilon — P62258 (reviewed: P62258)
All UniProt accessions (7): P62258, B4DJF2, I3L0W5, I3L3T1, K7EIT4, K7EM20, V9HW98
UniProt curated annotations — full annotation on UniProt →
Function. Adapter protein implicated in the regulation of a large spectrum of both general and specialized signaling pathways. Binds to a large number of partners, usually by recognition of a phosphoserine or phosphothreonine motif. Binding generally results in the modulation of the activity of the binding partner. Positively regulates phosphorylated protein HSF1 nuclear export to the cytoplasm. Plays a positive role in the antiviral signaling pathway upstream of TBK1 via interaction with RIGI. Mechanistically, directs RIGI redistribution from the cytosol to mitochondrial associated membranes where it mediates MAVS-dependent innate immune signaling during viral infection. Plays a role in proliferation inhibition and cell cycle arrest by exporting HNRNPC from the nucleus to the cytoplasm to be degraded by ubiquitination.
Subunit / interactions. Homodimer. Heterodimerizes with YWHAZ. Interacts with PKA-phosphorylated AANAT. Interacts with ABL1 (phosphorylated form); the interaction retains it in the cytoplasm. Interacts with ARHGEF28. Interacts with BEX3. Weakly interacts with CDKN1B. Interacts with the ‘Thr-369’ phosphorylated form of DAPK2. Interacts with DENND1A. Interacts with GAB2. Interacts with phosphorylated GRB10. Interacts with KSR1. Interacts with NDEL1. Interacts with PI4KB, TBC1D22A and TBC1D22B. Interacts with the phosphorylated (by AKT1) form of SRPK2. Interacts with TIAM2. Interacts with the ‘Ser-1134’ and ‘Ser-1161’ phosphorylated form of SOS1. Interacts with ZFP36 (via phosphorylated form). Interacts with SLITRK1. Interacts with HSF1 (via phosphorylated form); this interaction promotes HSF1 sequestration in the cytoplasm in a ERK-dependent manner. Interacts with RIPOR2 isoform 2. Interacts with KLHL22; required for the nuclear localization of KLHL22 upon amino acid starvation. Interacts with CRTC1. Interacts with CRTC2 (probably when phosphorylated at ‘Ser-171’). Interacts with CRTC3 (probably when phosphorylated at ‘Ser-162’ and/or ‘Ser-273’). Interacts with ATP2B1 and ATP2B3; this interaction inhibits calcium-transporting ATPase activity. Interacts with MEFV. Interacts with RIGI. Interacts with TRIM25. Interacts with HNRNPC. Interacts with RNF115. Interacts with GPR15; this interaction promotes ER-to-Golgi transport of GPR15. (Microbial infection) Interacts with HCV core protein.
Subcellular location. Nucleus. Cytoplasm. Melanosome.
Post-translational modifications. (Microbial infection) Cleaved by poliovirus protease 3C, leading to disruption of the interaction with RIGI.
Miscellaneous. Unable to dimerize with YWHAZ.
Similarity. Belongs to the 14-3-3 family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P62258-1 | 1 | yes |
| P62258-2 | SV |
RefSeq proteins (1): NP_006752* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000308 | 14-3-3 | Family |
| IPR023409 | 14-3-3_CS | Conserved_site |
| IPR023410 | 14-3-3_domain | Domain |
| IPR036815 | 14-3-3_dom_sf | Homologous_superfamily |
Pfam: PF00244
UniProt features (34 total): helix 11, modified residue 10, sequence conflict 3, site 3, chain 1, region of interest 1, cross-link 1, splice variant 1, mutagenesis site 1, strand 1, turn 1
Structure
Experimental structures (PDB)
11 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 2BR9 | X-RAY DIFFRACTION | 1.75 |
| 3UAL | X-RAY DIFFRACTION | 1.8 |
| 7V9B | X-RAY DIFFRACTION | 1.85 |
| 3UBW | X-RAY DIFFRACTION | 1.9 |
| 6EIH | X-RAY DIFFRACTION | 2.7 |
| 8DGP | X-RAY DIFFRACTION | 2.7 |
| 8DP5 | ELECTRON MICROSCOPY | 3.1 |
| 7C8E | X-RAY DIFFRACTION | 3.16 |
| 8DGN | X-RAY DIFFRACTION | 3.16 |
| 8DGM | X-RAY DIFFRACTION | 3.2 |
| 8Q1S | X-RAY DIFFRACTION | 3.23 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P62258-F1 | 92.90 | 0.86 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (3): 57 (interaction with phosphoserine on interacting protein); 130 (interaction with phosphoserine on interacting protein); 236–237 ((microbial infection) cleavage; by poliovirus protease 3c)
Post-translational modifications (11): 123, 131, 137, 210, 232, 50, 1, 50, 65, 69, 118
Mutagenesis-validated functional residues (1):
| Position | Phenotype |
|---|---|
| 236 | complete loss of cleavage by poliovirus protease 3c. |
Function
Pathways and Gene Ontology
Reactome pathways
67 pathways
| ID | Pathway |
|---|---|
| R-HSA-111447 | Activation of BAD and translocation to mitochondria |
| R-HSA-1445148 | Translocation of SLC2A4 (GLUT4) to the plasma membrane |
| R-HSA-2028269 | Signaling by Hippo |
| R-HSA-205025 | NADE modulates death signalling |
| R-HSA-2565942 | Regulation of PLK1 Activity at G2/M Transition |
| R-HSA-3371453 | Regulation of HSF1-mediated heat shock response |
| R-HSA-3371511 | HSF1 activation |
| R-HSA-380259 | Loss of Nlp from mitotic centrosomes |
| R-HSA-380270 | Recruitment of mitotic centrosome proteins and complexes |
| R-HSA-380284 | Loss of proteins required for interphase microtubule organization from the centrosome |
| R-HSA-380320 | Recruitment of NuMA to mitotic centrosomes |
| R-HSA-5620912 | Anchoring of the basal body to the plasma membrane |
| R-HSA-5625740 | RHO GTPases activate PKNs |
| R-HSA-5628897 | TP53 Regulates Metabolic Genes |
| R-HSA-75035 | Chk1/Chk2(Cds1) mediated inactivation of Cyclin B:Cdk1 complex |
| R-HSA-8854518 | AURKA Activation by TPX2 |
| R-HSA-8862803 | Deregulated CDK5 triggers multiple neurodegenerative pathways in Alzheimer’s disease models |
| R-HSA-8876198 | RAB GEFs exchange GTP for GDP on RABs |
| R-HSA-9735871 | SARS-CoV-1 targets host intracellular signalling and regulatory pathways |
| R-HSA-9755779 | SARS-CoV-2 targets host intracellular signalling and regulatory pathways |
| R-HSA-9856649 | Transcriptional and post-translational regulation of MITF-M expression and activity |
| R-HSA-109581 | Apoptosis |
| R-HSA-109606 | Intrinsic Pathway for Apoptosis |
| R-HSA-114452 | Activation of BH3-only proteins |
| R-HSA-1266738 | Developmental Biology |
| R-HSA-162582 | Signal Transduction |
| R-HSA-1640170 | Cell Cycle |
| R-HSA-1643685 | Disease |
| R-HSA-1852241 | Organelle biogenesis and maintenance |
| R-HSA-193704 | p75 NTR receptor-mediated signalling |
MSigDB gene sets: 593 (showing top):
GSE18804_SPLEEN_MACROPHAGE_VS_COLON_TUMORAL_MACROPHAGE_DN, GOBP_POTASSIUM_ION_TRANSPORT, MODULE_52, GOBP_NEGATIVE_REGULATION_OF_TRANSMEMBRANE_TRANSPORT, TGCGCANK_UNKNOWN, PID_TELOMERASE_PATHWAY, GOBP_CIRCULATORY_SYSTEM_PROCESS, GOBP_INTRACELLULAR_PROTEIN_TRANSPORT, KAAB_FAILED_HEART_ATRIUM_DN, REACTOME_G2_M_DNA_DAMAGE_CHECKPOINT, GCANCTGNY_MYOD_Q6, SP3_Q3, GOBP_POSITIVE_REGULATION_OF_INTRACELLULAR_PROTEIN_TRANSPORT, GOBP_POSITIVE_REGULATION_OF_PROTEIN_LOCALIZATION, GOBP_PROTEIN_TARGETING
GO Biological Process (32): MAPK cascade (GO:0000165), neuron migration (GO:0001764), cytoplasmic pattern recognition receptor signaling pathway (GO:0002753), regulation of heart rate by hormone (GO:0003064), protein targeting (GO:0006605), signal transduction (GO:0007165), regulation of mitotic cell cycle (GO:0007346), intracellular protein localization (GO:0008104), substantia nigra development (GO:0021762), hippocampus development (GO:0021766), cerebral cortex development (GO:0021987), intracellular potassium ion homeostasis (GO:0030007), negative regulation of toll-like receptor signaling pathway (GO:0034122), protein localization to nucleus (GO:0034504), cellular response to heat (GO:0034605), positive regulation of hippo signaling (GO:0035332), intracellular signal transduction (GO:0035556), positive regulation of protein export from nucleus (GO:0046827), regulation of cytosolic calcium ion concentration (GO:0051480), regulation of membrane repolarization (GO:0060306), protein localization to endoplasmic reticulum (GO:0070972), membrane repolarization during cardiac muscle cell action potential (GO:0086013), regulation of heart rate by cardiac conduction (GO:0086091), regulation of potassium ion transmembrane transport (GO:1901379), negative regulation of calcium ion export across plasma membrane (GO:1905913), endoplasmic reticulum to Golgi vesicle-mediated transport (GO:0006888), Golgi to plasma membrane transport (GO:0006893), positive regulation of toll-like receptor signaling pathway (GO:0034123), toll-like receptor 4 signaling pathway (GO:0034142), hippo signaling (GO:0035329), proteasome-mediated ubiquitin-dependent protein catabolic process (GO:0043161), protein K11-linked ubiquitination (GO:0070979)
GO Molecular Function (22): RNA binding (GO:0003723), protein phosphatase inhibitor activity (GO:0004864), calcium channel regulator activity (GO:0005246), potassium channel regulator activity (GO:0015459), calcium channel inhibitor activity (GO:0019855), enzyme binding (GO:0019899), protein phosphatase binding (GO:0019903), protein domain specific binding (GO:0019904), MHC class II protein complex binding (GO:0023026), ubiquitin protein ligase binding (GO:0031625), signaling adaptor activity (GO:0035591), identical protein binding (GO:0042802), histone deacetylase binding (GO:0042826), transmembrane transporter binding (GO:0044325), cadherin binding (GO:0045296), protein heterodimerization activity (GO:0046982), phosphoserine residue binding (GO:0050815), phosphoprotein binding (GO:0051219), scaffold protein binding (GO:0097110), protein sequestering activity (GO:0140311), protein binding (GO:0005515), molecular function inhibitor activity (GO:0140678)
GO Cellular Component (10): nucleus (GO:0005634), cytoplasm (GO:0005737), endoplasmic reticulum (GO:0005783), cytosol (GO:0005829), focal adhesion (GO:0005925), membrane (GO:0016020), mitochondrial membrane (GO:0031966), melanosome (GO:0042470), extracellular exosome (GO:0070062), plasma membrane (GO:0005886)
Reactome top-level categories
Rollup of top-17 pathways:
| Category | Pathways |
|---|---|
| G2/M Transition | 2 |
| Cellular response to heat stress | 2 |
| Centrosome maturation | 2 |
| Activation of BH3-only proteins | 1 |
| Membrane Trafficking | 1 |
| Signal Transduction | 1 |
| Cell death signalling via NRAGE, NRIF and NADE | 1 |
| Loss of proteins required for interphase microtubule organization from the centrosome | 1 |
| Mitotic Prometaphase | 1 |
| Assembly of the 9+0 primary cilium | 1 |
| RHO GTPase Effectors | 1 |
| Transcriptional Regulation by TP53 | 1 |
| G2/M DNA damage checkpoint | 1 |
| Neurodegenerative Diseases | 1 |
| Rab regulation of trafficking | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| protein binding | 7 |
| cellular anatomical structure | 3 |
| pallium development | 2 |
| anatomical structure development | 2 |
| intracellular anatomical structure | 2 |
| calcium channel activity | 2 |
| ion channel regulator activity | 2 |
| intracellular membrane-bounded organelle | 2 |
| cytoplasm | 2 |
| intracellular signaling cassette | 1 |
| cell migration | 1 |
| generation of neurons | 1 |
| positive regulation of cytokine production | 1 |
| pattern recognition receptor signaling pathway | 1 |
| intracellular receptor signaling pathway | 1 |
| regulation of heart rate by chemical signal | 1 |
| establishment of protein localization | 1 |
| cell communication | 1 |
| cellular process | 1 |
| signaling | 1 |
| regulation of cellular process | 1 |
| cellular response to stimulus | 1 |
| mitotic cell cycle | 1 |
| regulation of cell cycle | 1 |
| macromolecule localization | 1 |
| midbrain development | 1 |
| neural nucleus development | 1 |
| limbic system development | 1 |
| intracellular monoatomic cation homeostasis | 1 |
| potassium ion homeostasis | 1 |
| toll-like receptor signaling pathway | 1 |
| negative regulation of immune system process | 1 |
| negative regulation of signal transduction | 1 |
| regulation of toll-like receptor signaling pathway | 1 |
| protein localization to organelle | 1 |
| response to heat | 1 |
| cellular response to stress | 1 |
| hippo signaling | 1 |
| regulation of hippo signaling | 1 |
| positive regulation of intracellular signal transduction | 1 |
Protein interactions and networks
STRING
0 interactions, top by confidence (×1000):
IntAct
1084 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| MAP2K1 | RAF1 | psi-mi:“MI:0914”(association) | 0.960 |
| YWHAG | YWHAE | psi-mi:“MI:0407”(direct interaction) | 0.940 |
| BRAF | HRAS | psi-mi:“MI:0914”(association) | 0.940 |
| YWHAB | YWHAE | psi-mi:“MI:0407”(direct interaction) | 0.930 |
| YWHAE | YWHAQ | psi-mi:“MI:0407”(direct interaction) | 0.920 |
| YWHAE | RAF1 | psi-mi:“MI:0915”(physical association) | 0.920 |
| PTPN3 | YWHAQ | psi-mi:“MI:2364”(proximity) | 0.850 |
| ENTREP1 | WWP2 | psi-mi:“MI:0914”(association) | 0.850 |
| YAP1 | YWHAE | psi-mi:“MI:0915”(physical association) | 0.840 |
| MARK3 | YWHAE | psi-mi:“MI:0914”(association) | 0.790 |
| YWHAE | CDC25A | psi-mi:“MI:0915”(physical association) | 0.760 |
| CDC25B | YWHAE | psi-mi:“MI:0915”(physical association) | 0.760 |
| YWHAE | CDC25B | psi-mi:“MI:0915”(physical association) | 0.760 |
| YWHAE | RAB11FIP2 | psi-mi:“MI:0915”(physical association) | 0.740 |
| MARK2 | YWHAE | psi-mi:“MI:0914”(association) | 0.730 |
| INPP5E | PDE6D | psi-mi:“MI:0914”(association) | 0.730 |
| PARD6G | PRKCI | psi-mi:“MI:0914”(association) | 0.720 |
| YWHAH | FAM83G | psi-mi:“MI:0914”(association) | 0.710 |
| CGN | YWHAQ | psi-mi:“MI:0914”(association) | 0.710 |
| RAB3IP | TRAPPC3 | psi-mi:“MI:0914”(association) | 0.700 |
| BRAF | KRAS | psi-mi:“MI:0914”(association) | 0.680 |
| SIK3 | YWHAE | psi-mi:“MI:0914”(association) | 0.670 |
| SIK1 | YWHAE | psi-mi:“MI:0914”(association) | 0.670 |
| YWHAE | YWHAE | psi-mi:“MI:0407”(direct interaction) | 0.670 |
| PTPN3 | MCC | psi-mi:“MI:0914”(association) | 0.660 |
| MAST1 | YWHAB | psi-mi:“MI:0914”(association) | 0.640 |
| RAF1 | CALU | psi-mi:“MI:0914”(association) | 0.640 |
| PAK6 | YWHAG | psi-mi:“MI:0914”(association) | 0.640 |
BioGRID (2093): YWHAE (Affinity Capture-MS), YWHAE (Affinity Capture-Western), YWHAE (Reconstituted Complex), YWHAE (Affinity Capture-Western), GRB10 (Affinity Capture-Western), YWHAE (Two-hybrid), YWHAE (Affinity Capture-Western), DTL (Affinity Capture-Western), YWHAE (Affinity Capture-MS), YWHAE (Affinity Capture-MS), SORBS2 (Two-hybrid), FAM53C (Two-hybrid), Mdm4 (Reconstituted Complex), YWHAE (Affinity Capture-MS), YWHAE (Affinity Capture-MS)
ESM2 similar proteins: B8NLM9, O49995, O49996, O49998, O65352, P29307, P29309, P42644, P42648, P42653, P42654, P48347, P48348, P48349, P49106, P52908, P54632, P62258, P62259, P62260, P62261, P62262, P92177, P93206, P93207, P93208, P93210, P93212, P93214, P93259, P93342, Q01526, Q2F637, Q41246, Q41418, Q43470, Q43643, Q5XHK2, Q5ZMT0, Q6EUP4
Diamond homologs: A4K2U9, B8NLM9, O49995, O49998, O65352, O70456, O77642, P27348, P29309, P29310, P29311, P29361, P31946, P31947, P34730, P35213, P41932, P42643, P42644, P42652, P42653, P42654, P42656, P48348, P49106, P52908, P54632, P61981, P61982, P61983, P62258, P62259, P62260, P62261, P62262, P63101, P63102, P63103, P63104, P68250
SIGNOR signaling
6 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| YWHAE | “up-regulates activity” | NDEL1 | binding |
| YWHAE | “down-regulates activity” | NEFL | binding |
| ATG9A | “up-regulates activity” | YWHAE | binding |
| YWHAE | down-regulates | CDKN1B | binding |
| YWHAE | “up-regulates quantity by stabilization” | GRIN2C | binding |
| YWHAE | “up-regulates activity” | TBP | binding |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 194 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Activation of BAD and translocation to mitochondria | 6 | 33.6× | 7e-07 |
| Chk1/Chk2(Cds1) mediated inactivation of Cyclin B:Cdk1 complex | 6 | 29.6× | 1e-06 |
| SARS-CoV-1 targets host intracellular signalling and regulatory pathways | 6 | 29.6× | 1e-06 |
| Signaling by high-kinase activity BRAF mutants | 11 | 25.7× | 2e-10 |
| Signaling by RAS mutants | 8 | 24.9× | 6e-08 |
| MAP2K and MAPK activation | 11 | 23.1× | 3e-10 |
| Signaling by RAF1 mutants | 11 | 22.5× | 3e-10 |
| Activation of BH3-only proteins | 6 | 21.9× | 1e-05 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| insulin-like growth factor receptor signaling pathway | 6 | 17.2× | 3e-04 |
| positive regulation of fibroblast proliferation | 7 | 12.0× | 4e-04 |
| ERK1 and ERK2 cascade | 6 | 11.0× | 2e-03 |
| intrinsic apoptotic signaling pathway | 5 | 10.4× | 1e-02 |
| MAPK cascade | 11 | 9.7× | 7e-06 |
| positive regulation of protein localization to plasma membrane | 6 | 9.4× | 4e-03 |
| insulin receptor signaling pathway | 7 | 9.0× | 2e-03 |
| epidermal growth factor receptor signaling pathway | 6 | 8.6× | 7e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
101 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 2 |
| Likely pathogenic | 3 |
| Uncertain significance | 20 |
| Likely benign | 31 |
| Benign | 23 |
Top pathogenic / likely-pathogenic (5)
| Variant ID | HGVS | Classification |
|---|---|---|
| 4813503 | Single allele | Pathogenic |
| 816551 | GRCh37/hg19 17p13.3(chr17:1193546-1376587)x3 | Pathogenic |
| 152857 | GRCh38/hg38 17p13.3(chr17:1348488-1358016)x3 | Likely pathogenic |
| 154956 | GRCh38/hg38 17p13.3(chr17:1375174-1405502)x1 | Likely pathogenic |
| 2576581 | NM_006761.5(YWHAE):c.179G>A (p.Trp60Ter) | Likely pathogenic |
SpliceAI
1287 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 17:1345497:CAC:C | acceptor_gain | 1.0000 |
| 17:1345498:ACCTG:A | acceptor_loss | 1.0000 |
| 17:1345499:CCTG:C | acceptor_loss | 1.0000 |
| 17:1345500:C:CC | acceptor_gain | 1.0000 |
| 17:1345501:T:A | acceptor_loss | 1.0000 |
| 17:1345503:T:TC | acceptor_gain | 1.0000 |
| 17:1354205:GCTT:G | donor_loss | 1.0000 |
| 17:1354206:CTT:C | donor_loss | 1.0000 |
| 17:1354207:TTA:T | donor_loss | 1.0000 |
| 17:1354208:T:TG | donor_loss | 1.0000 |
| 17:1354209:A:AC | donor_gain | 1.0000 |
| 17:1354209:A:AG | donor_loss | 1.0000 |
| 17:1354210:C:CC | donor_gain | 1.0000 |
| 17:1354210:CCG:C | donor_gain | 1.0000 |
| 17:1354347:CCTA:C | acceptor_loss | 1.0000 |
| 17:1355659:CAA:C | acceptor_gain | 1.0000 |
| 17:1355660:A:T | acceptor_gain | 1.0000 |
| 17:1355735:A:C | donor_gain | 1.0000 |
| 17:1361088:TTA:T | donor_loss | 1.0000 |
| 17:1361089:TACCT:T | donor_loss | 1.0000 |
| 17:1361090:ACCT:A | donor_loss | 1.0000 |
| 17:1361091:C:A | donor_loss | 1.0000 |
| 17:1361294:CTTTC:C | acceptor_gain | 1.0000 |
| 17:1361900:A:AC | donor_gain | 1.0000 |
| 17:1361901:C:CC | donor_gain | 1.0000 |
| 17:1361938:G:C | donor_gain | 1.0000 |
| 17:1364853:TCTCA:T | donor_loss | 1.0000 |
| 17:1364854:CTCA:C | donor_loss | 1.0000 |
| 17:1364855:TCA:T | donor_loss | 1.0000 |
| 17:1364856:CA:C | donor_loss | 1.0000 |
AlphaMissense
1690 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 17:1354233:C:A | W231C | 1.000 |
| 17:1354233:C:G | W231C | 1.000 |
| 17:1354234:C:G | W231S | 1.000 |
| 17:1354235:A:G | W231R | 1.000 |
| 17:1354235:A:T | W231R | 1.000 |
| 17:1354237:A:G | L230P | 1.000 |
| 17:1354237:A:T | L230Q | 1.000 |
| 17:1354243:A:G | L228P | 1.000 |
| 17:1354243:A:T | L228Q | 1.000 |
| 17:1354245:A:C | N227K | 1.000 |
| 17:1354245:A:T | N227K | 1.000 |
| 17:1354246:T:A | N227I | 1.000 |
| 17:1354247:T:C | N227D | 1.000 |
| 17:1354248:A:C | D226E | 1.000 |
| 17:1354248:A:T | D226E | 1.000 |
| 17:1354249:T:A | D226V | 1.000 |
| 17:1354249:T:C | D226G | 1.000 |
| 17:1354249:T:G | D226A | 1.000 |
| 17:1354250:C:A | D226Y | 1.000 |
| 17:1354250:C:G | D226H | 1.000 |
| 17:1354250:C:T | D226N | 1.000 |
| 17:1354252:C:G | R225P | 1.000 |
| 17:1354253:G:T | R225S | 1.000 |
| 17:1354254:T:A | L224F | 1.000 |
| 17:1354254:T:G | L224F | 1.000 |
| 17:1354255:A:G | L224S | 1.000 |
| 17:1354257:C:A | L223F | 1.000 |
| 17:1354257:C:G | L223F | 1.000 |
| 17:1354258:A:C | L223W | 1.000 |
| 17:1354258:A:G | L223S | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000007499 (17:1349854 T>C), RS1000009360 (17:1394354 T>C,G), RS1000029832 (17:1397279 C>T), RS1000031424 (17:1374564 A>G), RS1000038646 (17:1347014 T>A), RS1000091122 (17:1366872 G>A), RS1000161835 (17:1368045 G>C), RS1000180929 (17:1401015 T>C), RS1000237850 (17:1386512 T>C), RS1000243935 (17:1370734 G>A), RS1000274566 (17:1393571 A>C), RS1000281090 (17:1370681 T>C), RS1000300240 (17:1357845 T>C,G), RS1000344170 (17:1395978 C>T), RS1000365843 (17:1374795 G>A)
Disease associations
OMIM: gene MIM:605066 | disease phenotypes: MIM:247200, MIM:142623
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| neurodevelopmental disorder | Strong | Autosomal dominant |
| complex neurodevelopmental disorder | Limited | Autosomal dominant |
Mondo (4): Miller-Dieker lissencephaly syndrome (MONDO:0009532), Hirschsprung disease (MONDO:0018309), complex neurodevelopmental disorder (MONDO:0100038), neurodevelopmental disorder (MONDO:0700092)
Orphanet (2): Miller-Dieker syndrome (Orphanet:531), Hirschsprung disease (Orphanet:388)
HPO phenotypes
33 total (30 of 33 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000023 | Inguinal hernia |
| HP:0000098 | Tall stature |
| HP:0000112 | Nephropathy |
| HP:0000160 | Narrow mouth |
| HP:0000177 | Abnormal upper lip morphology |
| HP:0000218 | High palate |
| HP:0000286 | Epicanthus |
| HP:0000316 | Hypertelorism |
| HP:0000348 | High forehead |
| HP:0000369 | Low-set ears |
| HP:0000445 | Wide nose |
| HP:0000463 | Anteverted nares |
| HP:0000470 | Short neck |
| HP:0000494 | Downslanted palpebral fissures |
| HP:0000960 | Sacral dimple |
| HP:0001250 | Seizure |
| HP:0001251 | Ataxia |
| HP:0001252 | Hypotonia |
| HP:0001263 | Global developmental delay |
| HP:0001339 | Lissencephaly |
| HP:0001374 | Congenital hip dislocation |
| HP:0001510 | Growth delay |
| HP:0001539 | Omphalocele |
| HP:0001561 | Polyhydramnios |
| HP:0001626 | Abnormality of the cardiovascular system |
| HP:0002007 | Frontal bossing |
| HP:0002079 | Hypoplasia of the corpus callosum |
| HP:0002119 | Ventriculomegaly |
| HP:0002120 | Cerebral cortical atrophy |
| HP:0002353 | EEG abnormality |
GWAS associations
11 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST004946_33 | Schizophrenia | 1.000000e-09 |
| GCST006268_480 | Reaction time | 5.000000e-08 |
| GCST006414_32 | Atrial fibrillation | 3.000000e-09 |
| GCST007201_250 | Schizophrenia | 1.000000e-07 |
| GCST010105_139 | Nicotine dependence symptom count | 8.000000e-06 |
| GCST010105_196 | Nicotine dependence symptom count | 8.000000e-06 |
| GCST011213_1 | Left ventricular mass to end-diastolic volume ratio (MTAG) | 4.000000e-06 |
| GCST90002386_298 | High light scatter reticulocyte percentage of red cells | 1.000000e-09 |
| GCST90002395_233 | Mean platelet volume | 4.000000e-13 |
| GCST90002397_725 | Mean spheric corpuscular volume | 7.000000e-10 |
| GCST90026611_1 | Bevacizumab-induced composite toxicity (either hypertension or proteinuria) | 2.000000e-06 |
EFO canonical traits (4, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0008393 | reaction time measurement |
| EFO:0009262 | nicotine dependence symptom count |
| EFO:0010556 | Left ventricular mass to end-diastolic volume ratio |
| EFO:0005943 | response to bevacizumab |
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D006627 | Hirschsprung Disease | C06.198.439; C06.405.469.158.701.439; C16.131.314.439 |
| D065886 | Neurodevelopmental Disorders | F03.625 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL3329082 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
4 potent at pChembl≥5 of 4 total, top 4 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 7.32 | Kd | 47.7 | nM | CHEMBL5653589 |
| 7.32 | ED50 | 47.7 | nM | CHEMBL5653589 |
| 5.21 | Kd | 6152 | nM | CHEMBL3752910 |
| 5.21 | ED50 | 6152 | nM | CHEMBL3752910 |
PubChem BioAssay actives
2 with measured affinity, of 10 total; 2 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2149800: Binding affinity to human YWHAE incubated for 45 mins by Kinobead based pull down assay | kd | 0.0477 | uM |
| 4-methyl-3-[(1-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2149800: Binding affinity to human YWHAE incubated for 45 mins by Kinobead based pull down assay | kd | 6.1515 | uM |
CTD chemical–gene interactions
81 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol A | decreases expression, decreases methylation, increases expression | 5 |
| Tobacco Smoke Pollution | affects expression, increases expression, increases metabolic processing | 3 |
| bisphenol F | decreases methylation, increases expression | 2 |
| sulindac sulfide | affects reaction, decreases expression, affects binding, increases reaction, increases localization | 2 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression, decreases expression | 2 |
| bisphenol S | decreases methylation, increases expression | 2 |
| Resveratrol | decreases expression, increases expression | 2 |
| Caffeine | decreases expression, decreases phosphorylation | 2 |
| Indomethacin | decreases expression, increases localization, affects reaction | 2 |
| Silicon Dioxide | affects expression, affects secretion | 2 |
| Dronabinol | increases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| FR900359 | increases phosphorylation | 1 |
| methylselenic acid | decreases expression | 1 |
| titanium dioxide | increases phosphorylation | 1 |
| pyrogallol 1,3-dimethyl ether | affects cotreatment, decreases expression | 1 |
| arsenite | affects binding, increases reaction | 1 |
| mono-(2-ethylhexyl)phthalate | increases expression | 1 |
| sulforaphane | affects binding | 1 |
| 11-nor-delta(9)-tetrahydrocannabinol-9-carboxylic acid | increases abundance, affects methylation | 1 |
| cobaltous chloride | decreases expression | 1 |
| sulindac sulfone | decreases expression | 1 |
| 2,3-bis(3’-hydroxybenzyl)butyrolactone | affects cotreatment, increases expression | 1 |
| nickel sulfate | increases expression | 1 |
| phenethyl isothiocyanate | affects binding | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| 4-(5-(4-chlorophenyl)-3-(trifluoromethyl)-1H-pyrazol-1-yl)benzenesulfonamide | decreases expression, increases localization, affects reaction | 1 |
| 3-(4’-hydroxy-3’-adamantylbiphenyl-4-yl)acrylic acid | decreases expression | 1 |
| (4-(((2-(3-fluoro-4-(trifluoromethyl)phenyl)-4-methyl-1,3-thiazol-5-yl)methyl)sulfanyl)-2-methylphenoxy)acetic acid | increases expression, affects cotreatment | 1 |
ChEMBL screening assays
4 unique, capped per target: 4 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL3389100 | Binding | Inhibition of recombinant 14-3-3epsilon protein (unknown origin) expression in Escherichia coli assessed as reduction in 14-3-3epsilon and histone H3 Ser10 interaction using human HT-29 cells lysates at 1 uM incubated for 1 hr by Western bl | Identification of 4’-O-β-D-glucosyl-5-O-methylvisamminol as a novel epigenetic suppressor of histone H3 phosphorylation at Ser10 and its interaction with 14-3-3ε. — Bioorg Med Chem Lett |
Cellosaurus cell lines
1 cell lines: 1 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_D8YC | Ubigene HCT 116 YWHAE KO | Cancer cell line | Male |
Clinical trials (associated diseases)
257 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT04586348 | PHASE4 | UNKNOWN | Prenatal Iodine Supplementation and Early Childhood Neurodevelopment |
| NCT04873115 | PHASE4 | UNKNOWN | Double-blind, Placebo-controlled, Randomized Clinical Trial Comparing the Efficacy and Safety of Sialanar Plus orAl rehabiLitation Against Placebo Plus Oral Rehabilitation for chIldren and Adolescents With seVere Sialorrhoea and Neurodisabilties, |
| NCT02343562 | PHASE4 | UNKNOWN | Probiotics for Prophylaxis of Postoperative Hirschsprungs Associated Enterocolitis |
| NCT07186647 | PHASE4 | COMPLETED | Laparoscopic-Assisted Transanal Pull-Through for Hirschsprung Disease in Pediatric:Short and Intermediate Outcomes of Two Different Techniques |
| NCT02559102 | PHASE3 | COMPLETED | Dexmedetomidine Sedation Versus General Anaesthesia for Inguinal Hernia Surgery in Infants |
| NCT02757079 | PHASE3 | COMPLETED | Study of the Efficacy and Safety of NPC-15 for Sleep Disorders of Children With Neurodevelopmental Disorders |
| NCT06915480 | PHASE3 | RECRUITING | Reducing Missed Appointments |
| NCT07377032 | PHASE3 | RECRUITING | TAP-GRIN: Interventional Study on Patients With GRIN-related Neurodevelopmental Disorders |
| NCT03660176 | PHASE3 | UNKNOWN | Effects of Butyrate Enemas on Postoperative Intestinal Mobility Disorders in Hirschsprung’s Disease |
| NCT04904081 | PHASE3 | UNKNOWN | Feasibility of Use of Indocyanine Green in Pediatric Colorectal Surgery |
| NCT02909959 | PHASE2 | COMPLETED | Sulforaphane for the Treatment of Young Men With Autism Spectrum Disorder |
| NCT06081348 | PHASE2 | RECRUITING | Sertraline vs. Placebo in the Treatment of Anxiety in Children and AdoLescents With NeurodevelopMental Disorders |
| NCT06352372 | PHASE2 | COMPLETED | Safety and Efficacy of tPBM for Epileptiform Activity in Autism |
| NCT00630838 | PHASE2 | COMPLETED | Probiotic Prophylaxis of Hirschprung’s Disease Associated Enterocolitis (HAEC) |
| NCT00503191 | PHASE1 | COMPLETED | NeuroModulation Technique Treatment of Autism |
| NCT04475848 | PHASE1 | COMPLETED | A Study to Investigate the Safety, Tolerability, Pharmacokinetics, Pharmacodynamics and Food Effect of RO6953958 in Healthy Participants |
| NCT06300398 | PHASE1 | COMPLETED | IAMA-6 Oral Dose Study in Healthy Adults |
| NCT06310681 | Not specified | COMPLETED | Pilot Testing of a Co-adapted Group Programme for Parents/Carers of Children With Complex Neurodisability |
| NCT07303049 | Not specified | NOT_YET_RECRUITING | Cognitive Benefit of Intensive Rehabilitation Using Rhythmic Music Training in Children With Complex Neurodevelopmental Disorder |
| NCT01783041 | PHASE2/PHASE3 | COMPLETED | Effect of Early L-Carnitine Supplementation on Neurodevelopmental Outcomes in Very Preterm Infants |
| NCT05767385 | PHASE2/PHASE3 | RECRUITING | Fetal Cerebrovascular Autoregulation in Congenital Heart Disease and Association With Neonatal Neurobehavior |
| NCT05675098 | EARLY_PHASE1 | NOT_YET_RECRUITING | Central Nervous System Stimulants and Physical Function in Children With Cerebral Palsy |
| NCT00783783 | Not specified | COMPLETED | CYP2D6 Pharmacogenetics in Risperidone-Treated Children |
| NCT01778504 | Not specified | RECRUITING | Studying Childhood-onset Behavioral, Psychiatric, and Developmental Disorders |
| NCT01850784 | Not specified | UNKNOWN | High Energy Formula Feeding in Infants With Congenital Heart Disease |
| NCT01922791 | Not specified | COMPLETED | Nutrition and Pregnancy Intervention Study |
| NCT01942525 | Not specified | UNKNOWN | Influence of Intrauterine Growth Restriction on Amplitude-integrated EEG in Preterm Infants |
| NCT02003170 | Not specified | COMPLETED | Etiology and Early Diagnosis of Neurodevelopmental Disorders |
| NCT02118649 | Not specified | ACTIVE_NOT_RECRUITING | Enhancing Behavior and Brain Response to Visual Targets Using a Computer Game |
| NCT02557191 | Not specified | TERMINATED | Biomarkers, Neurodevelopment and Preterm Infants |
| NCT02690675 | Not specified | COMPLETED | Iron Supplement Effect on Child Development |
| NCT02694003 | Not specified | COMPLETED | Better Nights, Better Days for Children With Neurodevelopment Disorders |
| NCT02792894 | Not specified | COMPLETED | Family Networks (FaNs) for Children With Developmental Disorders and Delays |
| NCT02871674 | Not specified | UNKNOWN | Good Night Project: Behavioural Sleep Interventions for Children With ADHD: A Randomised Controlled Trial |
| NCT02887157 | Not specified | COMPLETED | Analyzing Retinal Microanatomy in ROP |
| NCT02898298 | Not specified | COMPLETED | Positive Emotion Regulation Training in Children, Adolescents and Young Adults With and Without Developmental Disorder |
| NCT02912780 | Not specified | UNKNOWN | Introduction of Microsystems in a Level 3 Neonatal Intensive Care Unit |
| NCT03023293 | Not specified | COMPLETED | n-3 PUFAs, Irisin and Maternal Glucose Metabolism From Pregnancy to Postpartum |
| NCT03023644 | Not specified | COMPLETED | Improving Neurodevelopmental Outcomes in Children With Congenital Heart Disease: An Intervention Study |
| NCT03032991 | Not specified | UNKNOWN | Early Biomarkers of Neurodevelopment in Offspring of Diabetic Mothers |
Related Atlas pages
- Associated diseases: complex neurodevelopmental disorder, neurodevelopmental disorder
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): atrial fibrillation, complex neurodevelopmental disorder, Hirschsprung disease, hypertensive disorder, Miller-Dieker lissencephaly syndrome, neurodevelopmental disorder