YY1-DT

Summary

YY1-DT (YY1 divergent transcript, HGNC:56936) is a long non-coding RNA gene on chromosome 14q32.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56936
Approved symbol	YY1-DT
Name	YY1 divergent transcript
Location	14q32.2
Locus type	RNA, long non-coding
Status	Approved
Aliases	RP11-638I2.4
Ensembl gene	ENSG00000258982
Ensembl biotype	lncRNA
Entrez	132565735
RNAcentral	URS0002853AB6 — lncRNA, 724 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 16 — 16 lncRNA

ENST00000554537, ENST00000772898, ENST00000772899, ENST00000772900, ENST00000772901, ENST00000772902, ENST00000772903, ENST00000772904, ENST00000772905, ENST00000772906, ENST00000772907, ENST00000772908, ENST00000772909, ENST00000772910, ENST00000772911, ENST00000772912

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000554537 — 2 exons

Exon	Start	End
ENSE00004137371	100206057	100207652
ENSE00004137379	100238471	100238604

Expression profiles

Bgee: expression breadth ubiquitous, 119 present calls, max score 87.45.

Top tissues by expression

119 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	87.45	gold quality
cortical plate	UBERON:0005343	74.10	gold quality
ventricular zone	UBERON:0003053	69.31	gold quality
ganglionic eminence	UBERON:0004023	69.12	gold quality
lymph node	UBERON:0000029	67.81	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	66.15	gold quality
duodenum	UBERON:0002114	64.77	gold quality
bone marrow	UBERON:0002371	64.44	gold quality
hindlimb stylopod muscle	UBERON:0004252	64.08	gold quality
skeletal muscle tissue	UBERON:0001134	62.73	gold quality
monocyte	CL:0000576	62.37	gold quality
placenta	UBERON:0001987	61.33	gold quality
granulocyte	CL:0000094	59.21	gold quality
calcaneal tendon	UBERON:0003701	59.19	gold quality
cortex of kidney	UBERON:0001225	58.69	gold quality
islet of Langerhans	UBERON:0000006	58.17	gold quality
muscle of leg	UBERON:0001383	57.74	gold quality
blood	UBERON:0000178	57.45	gold quality
vermiform appendix	UBERON:0001154	57.36	gold quality
popliteal artery	UBERON:0002250	56.99	gold quality
tibial artery	UBERON:0007610	56.99	gold quality
prefrontal cortex	UBERON:0000451	56.34	gold quality
gastrocnemius	UBERON:0001388	56.27	gold quality
superior frontal gyrus	UBERON:0002661	56.16	gold quality
liver	UBERON:0002107	55.21	gold quality
fundus of stomach	UBERON:0001160	54.93	gold quality
sural nerve	UBERON:0015488	54.85	silver quality
kidney	UBERON:0002113	54.09	gold quality
left coronary artery	UBERON:0001626	53.83	gold quality
smooth muscle tissue	UBERON:0001135	53.69	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.34

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.