ZBTB14
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Also known as ZNF478
Summary
ZBTB14 (zinc finger and BTB domain containing 14, HGNC:12860) is a protein-coding gene on chromosome 18p11.31, encoding Zinc finger and BTB domain-containing protein 14 (O43829). Transcriptional activator of the dopamine transporter (DAT), binding its promoter at the consensus sequence 5’-CCTGCACAGTTCACGGA-3'.
Enables DNA-binding transcription factor activity and transcription cis-regulatory region binding activity. Involved in negative regulation of DNA-templated transcription. Located in aggresome; cytosol; and nuclear lumen.
Source: NCBI Gene 7541 — RefSeq curated summary.
At a glance
- GWAS associations: 3
- Clinical variants (ClinVar): 48 total — 1 pathogenic
- Druggable target: yes
- MANE Select transcript:
NM_001243702
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:12860 |
| Approved symbol | ZBTB14 |
| Name | zinc finger and BTB domain containing 14 |
| Location | 18p11.31 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | ZNF478 |
| Ensembl gene | ENSG00000198081 |
| Ensembl biotype | protein_coding |
| OMIM | 602126 |
| Entrez | 7541 |
Gene structure
Transcript identifiers
Ensembl transcripts: 20 — 19 protein_coding, 1 retained_intron
ENST00000357006, ENST00000400143, ENST00000578327, ENST00000582135, ENST00000582388, ENST00000585253, ENST00000614697, ENST00000615385, ENST00000651870, ENST00000905718, ENST00000905719, ENST00000905720, ENST00000905721, ENST00000905722, ENST00000905724, ENST00000905725, ENST00000905726, ENST00000905728, ENST00000935472, ENST00000968937
RefSeq mRNA: 4 — MANE Select: NM_001243702
NM_001143823, NM_001243702, NM_001243704, NM_003409
CCDS: CCDS11837
Canonical transcript exons
ENST00000651870 — 4 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001385643 | 5293972 | 5294001 |
| ENSE00003844037 | 5289022 | 5292204 |
| ENSE00003850133 | 5295652 | 5295726 |
| ENSE00003889951 | 5293244 | 5293327 |
Expression profiles
Bgee: expression breadth ubiquitous, 240 present calls, max score 90.85.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 5.4221 / max 132.9588, expressed in 1672 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 171094 | 3.1872 | 1454 |
| 171093 | 1.4409 | 841 |
| 171095 | 0.7940 | 523 |
Top tissues by expression
278 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| calcaneal tendon | UBERON:0003701 | 90.85 | gold quality |
| tendon | UBERON:0000043 | 86.96 | gold quality |
| lymph node | UBERON:0000029 | 86.59 | gold quality |
| monocyte | CL:0000576 | 85.56 | gold quality |
| granulocyte | CL:0000094 | 85.53 | gold quality |
| ganglionic eminence | UBERON:0004023 | 85.53 | gold quality |
| leukocyte | CL:0000738 | 85.39 | gold quality |
| mononuclear cell | CL:0000842 | 85.34 | gold quality |
| gall bladder | UBERON:0002110 | 85.23 | gold quality |
| cortical plate | UBERON:0005343 | 85.06 | gold quality |
| ventricular zone | UBERON:0003053 | 84.29 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 84.01 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 83.91 | gold quality |
| rectum | UBERON:0001052 | 83.41 | gold quality |
| vermiform appendix | UBERON:0001154 | 83.35 | gold quality |
| secondary oocyte | CL:0000655 | 82.32 | gold quality |
| spinal cord | UBERON:0002240 | 82.32 | gold quality |
| spleen | UBERON:0002106 | 82.18 | gold quality |
| caecum | UBERON:0001153 | 82.15 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 81.67 | gold quality |
| body of pancreas | UBERON:0001150 | 81.63 | gold quality |
| pancreas | UBERON:0001264 | 80.53 | gold quality |
| tendon of biceps brachii | UBERON:0008188 | 80.47 | silver quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 80.44 | gold quality |
| right coronary artery | UBERON:0001625 | 80.40 | gold quality |
| islet of Langerhans | UBERON:0000006 | 80.30 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 80.20 | gold quality |
| corpus callosum | UBERON:0002336 | 80.15 | gold quality |
| buccal mucosa cell | CL:0002336 | 80.05 | gold quality |
| mucosa of stomach | UBERON:0001199 | 80.05 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 4.57 |
Regulation
Is transcription factor: yes
Downstream targets (CollecTRI)
7 targets.
| Target | Regulation |
|---|---|
| ACTB | Repression |
| FHL2 | Activation |
| MYC | Repression |
| RPL32 | |
| SLC6A3 | Repression |
| TESC | Activation |
| ZBTB14 |
JASPAR motifs
| Motif | Name | Family |
|---|---|---|
| MA1650.1 | ZBTB14 | More than 3 adjacent zinc fingers |
| MA1650.2 | ZBTB14 | More than 3 adjacent zinc fingers |
JASPAR matrix evidence (PMIDs): PMID:19443739
Upstream regulators (CollecTRI, top): SP1, ZBTB14
miRNA regulators (miRDB)
123 targeting ZBTB14, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-LET-7A-3P | 100.00 | 74.03 | 3932 |
| HSA-LET-7B-3P | 100.00 | 74.08 | 3913 |
| HSA-LET-7F-1-3P | 100.00 | 74.02 | 3928 |
| HSA-MIR-98-3P | 100.00 | 74.08 | 3907 |
| HSA-MIR-4673 | 100.00 | 66.64 | 1490 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-9-5P | 100.00 | 72.28 | 2361 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-4789-3P | 99.99 | 70.75 | 2484 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-3692-3P | 99.98 | 70.27 | 2139 |
| HSA-MIR-19A-3P | 99.98 | 75.33 | 2762 |
| HSA-MIR-19B-3P | 99.98 | 75.44 | 2754 |
| HSA-MIR-4645-5P | 99.98 | 65.81 | 1284 |
| HSA-MIR-8068 | 99.98 | 73.85 | 2376 |
| HSA-MIR-4803 | 99.98 | 71.99 | 3117 |
| HSA-MIR-8075 | 99.97 | 67.20 | 962 |
| HSA-MIR-551B-5P | 99.96 | 71.28 | 3493 |
| HSA-MIR-590-3P | 99.96 | 74.34 | 6478 |
| HSA-MIR-4666A-3P | 99.96 | 71.71 | 3434 |
| HSA-MIR-548AT-5P | 99.96 | 70.83 | 2666 |
| HSA-MIR-495-3P | 99.96 | 72.81 | 4197 |
| HSA-MIR-5688 | 99.96 | 73.23 | 4504 |
| HSA-MIR-128-3P | 99.95 | 71.17 | 2484 |
Literature-anchored findings (GeneRIF, showing 6)
- transfection of ZFP161 induced dopamine transporter mRNA expression (PMID:14706637)
- ZNF295 may be involved in the bi-directional control of gene expression in concert with ZFP161 (PMID:15629158)
- GCC-elements are a novel class of ZF5 targets in 5’-regulatory regions of mammalian genes (PMID:16805315)
- data identify a new class of ZF5 targets, a subset of genes containing GCC-elements in their regulatory regions (PMID:17714511)
- ZF5 downregulated the activity of 5’-regulatory region of FMR1 gene (acting probably through canonic 5’-GCGCGC3’ sites). (PMID:20141036)
- ZFP161 acts as a scaffolding protein to facilitate the interaction between RPA and ATR/ATRIP. ZFP161 binds to RPA and ATR/ATRIP through distinct regions and stabilizes the RPA-ATR-ATRIP complex at stalled replication forks. This function of ZFP161 is important to the ATR signaling cascade and genome stability maintenance. (PMID:31757956)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | zbtb14 | ENSDARG00000098273 |
| danio_rerio | zbtb38 | ENSDARG00000100607 |
| mus_musculus | Zbtb14 | ENSMUSG00000049672 |
| rattus_norvegicus | Zbtb14 | ENSRNOG00000016719 |
Paralogs (28): ZNF280C (ENSG00000056277), ZBTB25 (ENSG00000089775), PRDM13 (ENSG00000112238), BCL6 (ENSG00000113916), FEZF1 (ENSG00000128610), ZBTB46 (ENSG00000130584), PRDM12 (ENSG00000130711), ZNF280D (ENSG00000137871), NACC2 (ENSG00000148411), FEZF2 (ENSG00000153266), ZBTB7B (ENSG00000160685), NACC1 (ENSG00000160877), BCL6B (ENSG00000161940), GFI1 (ENSG00000162676), GFI1B (ENSG00000165702), ZBTB49 (ENSG00000168826), ZNF280A (ENSG00000169548), ZNF581 (ENSG00000171425), ZNF524 (ENSG00000171443), ZBTB26 (ENSG00000171448), ZBTB21 (ENSG00000173276), ZNF683 (ENSG00000176083), ZBTB33 (ENSG00000177485), ZBTB3 (ENSG00000185670), ZBTB6 (ENSG00000186130), ZBTB12 (ENSG00000204366), ZNF580 (ENSG00000213015), ZNF280B (ENSG00000275004)
Protein
Protein identifiers
Zinc finger and BTB domain-containing protein 14 — O43829 (reviewed: O43829)
Alternative names: Zinc finger protein 161 homolog, Zinc finger protein 478, Zinc finger protein 5 homolog
All UniProt accessions (4): O43829, J3KRQ2, J3QL74, J3QLI2
UniProt curated annotations — full annotation on UniProt →
Function. Transcriptional activator of the dopamine transporter (DAT), binding its promoter at the consensus sequence 5’-CCTGCACAGTTCACGGA-3’. Binds to 5’-d(GCC)(n)-3’ trinucleotide repeats in promoter regions and acts as a repressor of the FMR1 gene. Transcriptional repressor of MYC and thymidine kinase promoters.
Subunit / interactions. Interacts with ZBTB21.
Subcellular location. Nucleus.
Domain organisation. The BTB/POZ domain seems to direct the protein to discrete regions in the nucleus.
Similarity. Belongs to the krueppel C2H2-type zinc-finger protein family.
RefSeq proteins (4): NP_001137295, NP_001230631, NP_001230633, NP_003400 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000210 | BTB/POZ_dom | Domain |
| IPR011333 | SKP1/BTB/POZ_sf | Homologous_superfamily |
| IPR013087 | Znf_C2H2_type | Domain |
| IPR036236 | Znf_C2H2_sf | Homologous_superfamily |
| IPR050457 | ZnFinger_BTB_dom_contain | Family |
Pfam: PF00096, PF00651
UniProt features (17 total): zinc finger region 5, cross-link 3, sequence variant 2, sequence conflict 2, chain 1, domain 1, region of interest 1, short sequence motif 1, compositionally biased region 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-O43829-F1 | 51.95 | 0.01 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (3): 46, 203, 249
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 220 (showing top):
GOBP_CARDIAC_CHAMBER_DEVELOPMENT, BORCZUK_MALIGNANT_MESOTHELIOMA_UP, FLECHNER_PBL_KIDNEY_TRANSPLANT_REJECTED_VS_OK_UP, BUYTAERT_PHOTODYNAMIC_THERAPY_STRESS_DN, GOBP_CARDIAC_SEPTUM_DEVELOPMENT, GOBP_CORONARY_VASCULATURE_DEVELOPMENT, MORF_MSH3, FISCHER_G1_S_CELL_CYCLE, MORF_BRCA1, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_DN, GRAESSMANN_RESPONSE_TO_MC_AND_DOXORUBICIN_DN, MORF_RAD51L3, JAZAG_TGFB1_SIGNALING_DN, MORF_CTSB, GROSS_HYPOXIA_VIA_ELK3_UP
GO Biological Process (8): negative regulation of transcription by RNA polymerase II (GO:0000122), regulation of cytokine production (GO:0001817), kidney development (GO:0001822), regulation of immune system process (GO:0002682), heart valve development (GO:0003170), cardiac septum development (GO:0003279), negative regulation of DNA-templated transcription (GO:0045892), coronary vasculature development (GO:0060976)
GO Molecular Function (10): transcription cis-regulatory region binding (GO:0000976), RNA polymerase II cis-regulatory region sequence-specific DNA binding (GO:0000978), DNA-binding transcription repressor activity, RNA polymerase II-specific (GO:0001227), DNA-binding transcription factor activity (GO:0003700), zinc ion binding (GO:0008270), sequence-specific DNA binding (GO:0043565), sequence-specific double-stranded DNA binding (GO:1990837), DNA binding (GO:0003677), protein binding (GO:0005515), metal ion binding (GO:0046872)
GO Cellular Component (5): nucleus (GO:0005634), nucleoplasm (GO:0005654), nucleolus (GO:0005730), cytosol (GO:0005829), aggresome (GO:0016235)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| heart development | 2 |
| anatomical structure development | 2 |
| regulation of DNA-templated transcription | 2 |
| RNA polymerase II transcription regulatory region sequence-specific DNA binding | 2 |
| nuclear lumen | 2 |
| cellular anatomical structure | 2 |
| regulation of transcription by RNA polymerase II | 1 |
| transcription by RNA polymerase II | 1 |
| negative regulation of DNA-templated transcription | 1 |
| cytokine production | 1 |
| regulation of gene expression | 1 |
| regulation of multicellular organismal process | 1 |
| animal organ development | 1 |
| renal system development | 1 |
| immune system process | 1 |
| regulation of biological process | 1 |
| cardiac chamber development | 1 |
| DNA-templated transcription | 1 |
| negative regulation of RNA biosynthetic process | 1 |
| blood vessel development | 1 |
| transcription regulatory region nucleic acid binding | 1 |
| sequence-specific double-stranded DNA binding | 1 |
| cis-regulatory region sequence-specific DNA binding | 1 |
| negative regulation of transcription by RNA polymerase II | 1 |
| DNA-binding transcription factor activity, RNA polymerase II-specific | 1 |
| DNA-binding transcription repressor activity | 1 |
| transcription cis-regulatory region binding | 1 |
| transcription regulator activity | 1 |
| transition metal ion binding | 1 |
| DNA binding | 1 |
| double-stranded DNA binding | 1 |
| sequence-specific DNA binding | 1 |
| nucleic acid binding | 1 |
| binding | 1 |
| cation binding | 1 |
| intracellular membrane-bounded organelle | 1 |
| intracellular membraneless organelle | 1 |
| cytoplasm | 1 |
| inclusion body | 1 |
Protein interactions and networks
STRING
1074 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ZBTB14 | ADNP | Q9H2P0 | 777 |
| ZBTB14 | ZNF587 | Q96SQ5 | 589 |
| ZBTB14 | E2F1 | Q01094 | 557 |
| ZBTB14 | HNF1A | P20823 | 547 |
| ZBTB14 | MYC | P01106 | 544 |
| ZBTB14 | KAT5 | Q92993 | 513 |
| ZBTB14 | POU5F1 | P31359 | 479 |
| ZBTB14 | CLUL1 | Q15846 | 477 |
| ZBTB14 | PAX6 | P26367 | 465 |
| ZBTB14 | HNF4A | P41235 | 456 |
| ZBTB14 | AKAIN1 | P0CW23 | 438 |
| ZBTB14 | CBX5 | P45973 | 430 |
| ZBTB14 | GLRX | P35754 | 424 |
| ZBTB14 | NCOA4 | Q13772 | 422 |
| ZBTB14 | PPP4R1 | Q8TF05 | 420 |
IntAct
241 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| ZBTB14 | SNRPB2 | psi-mi:“MI:0915”(physical association) | 0.720 |
| ZBTB14 | NAA10 | psi-mi:“MI:0915”(physical association) | 0.720 |
| BYSL | ZBTB14 | psi-mi:“MI:0915”(physical association) | 0.720 |
| ZBTB14 | BYSL | psi-mi:“MI:0915”(physical association) | 0.720 |
| ZBTB14 | MAD2L1BP | psi-mi:“MI:0915”(physical association) | 0.720 |
| ZBTB14 | EPM2AIP1 | psi-mi:“MI:0915”(physical association) | 0.720 |
| CEP19 | ZBTB14 | psi-mi:“MI:0915”(physical association) | 0.720 |
| ZBTB14 | PNKP | psi-mi:“MI:0915”(physical association) | 0.720 |
| ZBTB14 | AP1M1 | psi-mi:“MI:0915”(physical association) | 0.720 |
| ZBTB14 | CBX8 | psi-mi:“MI:0915”(physical association) | 0.720 |
| SNRPB2 | ZBTB14 | psi-mi:“MI:0915”(physical association) | 0.720 |
| NAA10 | ZBTB14 | psi-mi:“MI:0915”(physical association) | 0.720 |
| EPM2AIP1 | ZBTB14 | psi-mi:“MI:0915”(physical association) | 0.720 |
| ZBTB14 | CEP19 | psi-mi:“MI:0915”(physical association) | 0.720 |
| PNKP | ZBTB14 | psi-mi:“MI:0915”(physical association) | 0.720 |
| AP1M1 | ZBTB14 | psi-mi:“MI:0915”(physical association) | 0.720 |
| MAD2L1BP | ZBTB14 | psi-mi:“MI:0915”(physical association) | 0.720 |
| CBX8 | ZBTB14 | psi-mi:“MI:0915”(physical association) | 0.720 |
BioGRID (110): ZBTB14 (Two-hybrid), ZBTB14 (Two-hybrid), ZBTB14 (Two-hybrid), ZBTB14 (Two-hybrid), ZBTB14 (Two-hybrid), ZBTB14 (Two-hybrid), ZBTB14 (Two-hybrid), ZBTB14 (Two-hybrid), ZBTB14 (Two-hybrid), ZBTB14 (Two-hybrid), NAA10 (Two-hybrid), AP1M1 (Two-hybrid), MAD2L1BP (Two-hybrid), MORF4L2 (Two-hybrid), EPM2AIP1 (Two-hybrid)
ESM2 similar proteins: A1L1J6, A2ANX9, A7Y7X5, E9Q8T2, G5E8B9, O15060, O43167, O43829, O62836, O95625, P08048, P0C6P6, P10925, P17010, P17012, P20662, P52739, Q01611, Q08376, Q0VCB0, Q2FAY8, Q3TTC2, Q4V8R6, Q52V16, Q5DU09, Q5PPG4, Q5R5M1, Q5R5N5, Q5RAU9, Q5SVQ8, Q6B4Z5, Q6GNP2, Q6INV8, Q7TS63, Q7ZVR6, Q80V63, Q80X44, Q811F1, Q8K3J5, Q92010
Diamond homologs: A0JN76, A1L2U9, A1YEX3, A1YPR0, A2AAX3, B1WAZ8, B1WBS3, B1WBU4, B2RXF5, D3ZA50, O14867, O15062, O15156, O15209, O43167, O43298, O43829, O88282, O88939, O93567, O95365, P24278, P41182, P41183, P52739, P97302, P97303, Q08376, Q0IH98, Q0IJ29, Q0P4X6, Q0VCJ6, Q13105, Q14526, Q1H9T6, Q1L8W0, Q2T9Z7, Q3B725, Q3B7N9, Q3SWU4
SIGNOR signaling
3 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| ZBTB14 | “up-regulates activity” | ZBTB14 | binding |
| ZBTB14 | “down-regulates quantity by repression” | MYC | “transcriptional regulation” |
| NACC1 | “up-regulates activity” | ZBTB14 | binding |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 66 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| nucleotide-excision repair | 5 | 33.0× | 2e-04 |
| double-strand break repair via homologous recombination | 5 | 13.4× | 5e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
48 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 0 |
| Uncertain significance | 36 |
| Likely benign | 1 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (1)
| Variant ID | HGVS | Classification |
|---|---|---|
| 2685058 | GRCh37/hg19 18p11.32-q11.1(chr18:136227-18521285)x4 | Pathogenic |
SpliceAI
479 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 18:5292200:AACTC:A | acceptor_gain | 1.0000 |
| 18:5292202:CTC:C | acceptor_gain | 1.0000 |
| 18:5292203:TC:T | acceptor_gain | 1.0000 |
| 18:5292204:CC:C | acceptor_gain | 1.0000 |
| 18:5292205:C:CC | acceptor_gain | 1.0000 |
| 18:5293265:T:C | donor_gain | 1.0000 |
| 18:5293269:AATG:A | donor_gain | 1.0000 |
| 18:5294861:T:TA | donor_gain | 1.0000 |
| 18:5292201:ACTCC:A | acceptor_gain | 0.9900 |
| 18:5292202:CTCCT:C | acceptor_gain | 0.9900 |
| 18:5292206:T:G | acceptor_loss | 0.9900 |
| 18:5292208:C:CT | acceptor_gain | 0.9900 |
| 18:5293327:CCTA:C | acceptor_loss | 0.9900 |
| 18:5293328:C:A | acceptor_loss | 0.9900 |
| 18:5293329:T:G | acceptor_loss | 0.9900 |
| 18:5294799:A:AC | donor_gain | 0.9900 |
| 18:5294800:C:CC | donor_gain | 0.9900 |
| 18:5295808:CTTA:C | donor_loss | 0.9900 |
| 18:5295809:TTA:T | donor_loss | 0.9900 |
| 18:5292209:A:T | acceptor_gain | 0.9800 |
| 18:5293239:GTTA:G | donor_loss | 0.9800 |
| 18:5293240:TTA:T | donor_loss | 0.9800 |
| 18:5293241:TA:T | donor_loss | 0.9800 |
| 18:5293242:ACC:A | donor_loss | 0.9800 |
| 18:5293269:AATGC:A | donor_gain | 0.9800 |
| 18:5295057:T:A | donor_gain | 0.9800 |
| 18:5295058:C:A | donor_gain | 0.9800 |
| 18:5295807:GCTTA:G | donor_loss | 0.9800 |
| 18:5292205:C:T | acceptor_gain | 0.9700 |
| 18:5293238:AGTT:A | donor_loss | 0.9700 |
AlphaMissense
3035 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 18:5290987:G:C | H407Q | 1.000 |
| 18:5290987:G:T | H407Q | 1.000 |
| 18:5290989:G:C | H407D | 1.000 |
| 18:5290989:G:T | H407N | 1.000 |
| 18:5290997:A:G | L404P | 1.000 |
| 18:5291014:A:C | F398L | 1.000 |
| 18:5291014:A:T | F398L | 1.000 |
| 18:5291015:A:G | F398S | 1.000 |
| 18:5291016:A:G | F398L | 1.000 |
| 18:5291028:A:G | C394R | 1.000 |
| 18:5291037:A:G | C391R | 1.000 |
| 18:5291041:A:C | F389L | 1.000 |
| 18:5291041:A:T | F389L | 1.000 |
| 18:5291043:A:G | F389L | 1.000 |
| 18:5291071:A:C | H379Q | 1.000 |
| 18:5291071:A:T | H379Q | 1.000 |
| 18:5291073:G:C | H379D | 1.000 |
| 18:5291073:G:T | H379N | 1.000 |
| 18:5291081:A:G | L376P | 1.000 |
| 18:5291098:G:C | F370L | 1.000 |
| 18:5291098:G:T | F370L | 1.000 |
| 18:5291099:A:G | F370S | 1.000 |
| 18:5291100:A:G | F370L | 1.000 |
| 18:5291100:A:T | F370I | 1.000 |
| 18:5291112:A:G | C366R | 1.000 |
| 18:5291121:A:G | C363R | 1.000 |
| 18:5291125:A:C | F361L | 1.000 |
| 18:5291125:A:T | F361L | 1.000 |
| 18:5291127:A:G | F361L | 1.000 |
| 18:5291143:G:C | H355Q | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000031282 (18:5293052 T>C), RS1000035957 (18:5289090 A>T), RS1000090282 (18:5295034 G>A), RS1000513287 (18:5288812 T>C), RS1000751493 (18:5297529 A>G), RS1000835166 (18:5295496 G>A,C), RS1001095095 (18:5295657 C>T), RS1001602870 (18:5297566 C>G,T), RS1001699102 (18:5291433 C>G,T), RS1001845348 (18:5296215 C>G,T), RS1002049641 (18:5296897 C>T), RS1002052799 (18:5292653 AC>A), RS1002107306 (18:5296264 C>A,G,T), RS1002119016 (18:5297836 T>G), RS1002149182 (18:5290291 G>A,T)
Disease associations
OMIM: gene MIM:602126 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
3 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST003073_8 | Cerebral amyloid deposition (PET imaging) | 3.000000e-07 |
| GCST90014122_5 | Lacunar stroke | 1.000000e-06 |
| GCST90014123_5 | Lacunar stroke | 2.000000e-08 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0007707 | cerebral amyloid deposition measurement |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL5069377 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
26 total (human), top 26 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects expression, decreases expression, decreases methylation | 4 |
| Vehicle Emissions | increases expression, increases abundance | 2 |
| Quercetin | decreases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| 3-((6-(2-methoxyphenyl)pyrimidin-4-yl)amino)phenyl)methane sulfonamide | decreases expression | 1 |
| FR900359 | increases phosphorylation | 1 |
| TAK-243 | decreases sumoylation | 1 |
| triphenyl phosphate | affects expression | 1 |
| 2,5,2’,5’-tetrachlorobiphenyl | increases expression | 1 |
| trichostatin A | affects expression | 1 |
| sodium arsenite | decreases expression | 1 |
| cobaltous chloride | decreases expression | 1 |
| ferrous chloride | decreases expression | 1 |
| abrine | decreases expression | 1 |
| Irinotecan | decreases expression | 1 |
| Air Pollutants, Occupational | affects expression, increases abundance, increases expression | 1 |
| Benzo(a)pyrene | increases methylation | 1 |
| Demecolcine | decreases expression | 1 |
| Formaldehyde | decreases expression | 1 |
| Hydrogen Peroxide | increases expression | 1 |
| Tobacco Smoke Pollution | decreases expression | 1 |
| Urethane | decreases expression | 1 |
| Vincristine | decreases expression | 1 |
| Cyclosporine | decreases expression | 1 |
| Aflatoxin B1 | increases methylation | 1 |
| Particulate Matter | increases abundance, increases expression | 1 |
ChEMBL screening assays
2 unique, capped per target: 2 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL5059510 | Binding | Proteomics fold change data (SUDHL4 cells, 1h) | Data for DCP probe CCT369260 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): stroke disorder