ZBTB40
geneOn this page
Also known as KIAA0478ZNF923
Summary
ZBTB40 (zinc finger and BTB domain containing 40, HGNC:29045) is a protein-coding gene on chromosome 1p36.12, encoding Zinc finger and BTB domain-containing protein 40 (Q9NUA8). May be involved in transcriptional regulation.
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Involved in DNA damage response. Located in nucleus.
Source: NCBI Gene 9923 — RefSeq curated summary.
At a glance
- Gene–disease (curated): neurodevelopmental disorder (Limited, GenCC)
- GWAS associations: 29
- Clinical variants (ClinVar): 187 total
- Druggable target: yes
- MANE Select transcript:
NM_014870
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:29045 |
| Approved symbol | ZBTB40 |
| Name | zinc finger and BTB domain containing 40 |
| Location | 1p36.12 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | KIAA0478, ZNF923 |
| Ensembl gene | ENSG00000184677 |
| Ensembl biotype | protein_coding |
| OMIM | 612106 |
| Entrez | 9923 |
Gene structure
Transcript identifiers
Ensembl transcripts: 13 — 13 protein_coding
ENST00000374651, ENST00000375647, ENST00000400239, ENST00000404138, ENST00000650433, ENST00000852018, ENST00000852019, ENST00000852020, ENST00000925700, ENST00000925701, ENST00000925702, ENST00000925703, ENST00000966439
RefSeq mRNA: 3 — MANE Select: NM_014870
NM_001083621, NM_001330398, NM_014870
CCDS: CCDS224, CCDS81278
Canonical transcript exons
ENST00000375647 — 18 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001464145 | 22489880 | 22490645 |
| ENSE00001542132 | 22451851 | 22452004 |
| ENSE00001595635 | 22508001 | 22508137 |
| ENSE00001601175 | 22520061 | 22520275 |
| ENSE00001629626 | 22508530 | 22508731 |
| ENSE00001658765 | 22511179 | 22511347 |
| ENSE00001671718 | 22502299 | 22502441 |
| ENSE00001678525 | 22501492 | 22501684 |
| ENSE00001701718 | 22512924 | 22513130 |
| ENSE00001702304 | 22517300 | 22517464 |
| ENSE00001714762 | 22511676 | 22512134 |
| ENSE00001730193 | 22522377 | 22522463 |
| ENSE00001740531 | 22524218 | 22524444 |
| ENSE00001742203 | 22521496 | 22521658 |
| ENSE00001759014 | 22509100 | 22509233 |
| ENSE00001936272 | 22526202 | 22531154 |
| ENSE00002153239 | 22491400 | 22491533 |
| ENSE00003790237 | 22506049 | 22506241 |
Expression profiles
Bgee: expression breadth ubiquitous, 285 present calls, max score 90.99.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 12.4317 / max 128.4089, expressed in 1786 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 1282 | 12.1914 | 1785 |
| 1281 | 0.2403 | 151 |
Top tissues by expression
294 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| dorsal motor nucleus of vagus nerve | UBERON:0002870 | 90.99 | gold quality |
| cervix squamous epithelium | UBERON:0006922 | 89.05 | silver quality |
| tibia | UBERON:0000979 | 87.77 | gold quality |
| right coronary artery | UBERON:0001625 | 87.74 | gold quality |
| blood vessel layer | UBERON:0004797 | 87.28 | gold quality |
| granulocyte | CL:0000094 | 87.23 | gold quality |
| sperm | CL:0000019 | 86.16 | gold quality |
| endothelial cell | CL:0000115 | 86.06 | silver quality |
| sural nerve | UBERON:0015488 | 85.96 | gold quality |
| inferior olivary complex | UBERON:0002127 | 85.90 | gold quality |
| cardia of stomach | UBERON:0001162 | 85.83 | gold quality |
| male germ cell | CL:0000015 | 85.61 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 85.36 | gold quality |
| right adrenal gland | UBERON:0001233 | 85.32 | gold quality |
| mucosa of stomach | UBERON:0001199 | 85.14 | gold quality |
| saphenous vein | UBERON:0007318 | 84.87 | gold quality |
| adrenal tissue | UBERON:0018303 | 84.67 | gold quality |
| coronary artery | UBERON:0001621 | 84.30 | gold quality |
| adrenal cortex | UBERON:0001235 | 84.28 | gold quality |
| left adrenal gland | UBERON:0001234 | 84.19 | gold quality |
| adrenal gland | UBERON:0002369 | 84.16 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 84.13 | gold quality |
| visceral pleura | UBERON:0002401 | 84.12 | gold quality |
| pancreatic ductal cell | CL:0002079 | 84.11 | silver quality |
| descending thoracic aorta | UBERON:0002345 | 84.02 | gold quality |
| left coronary artery | UBERON:0001626 | 83.84 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 83.76 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 83.59 | gold quality |
| lymph node | UBERON:0000029 | 83.55 | gold quality |
| thoracic aorta | UBERON:0001515 | 83.54 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 4.78 |
Regulation
Is transcription factor: yes
JASPAR motifs
| Motif | Name | Family |
|---|---|---|
| MA2488.1 | ZBTB40 | More than 3 adjacent zinc fingers |
JASPAR matrix evidence (PMIDs): PMID:39605530
miRNA regulators (miRDB)
122 targeting ZBTB40, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4533 | 100.00 | 69.48 | 2758 |
| HSA-MIR-4747-5P | 100.00 | 67.90 | 2681 |
| HSA-MIR-5196-5P | 100.00 | 67.98 | 2761 |
| HSA-MIR-6873-3P | 100.00 | 71.42 | 2626 |
| HSA-MIR-4476 | 100.00 | 68.18 | 2030 |
| HSA-MIR-6876-5P | 100.00 | 67.68 | 2126 |
| HSA-MIR-4692 | 100.00 | 67.32 | 2066 |
| HSA-MIR-7110-3P | 100.00 | 73.18 | 2486 |
| HSA-MIR-223-3P | 99.99 | 70.14 | 1140 |
| HSA-MIR-4514 | 99.99 | 67.10 | 1870 |
| HSA-MIR-6825-5P | 99.96 | 69.81 | 3431 |
| HSA-MIR-767-5P | 99.95 | 70.85 | 993 |
| HSA-MIR-1236-3P | 99.94 | 68.04 | 1695 |
| HSA-MIR-205-3P | 99.92 | 69.92 | 3165 |
| HSA-MIR-374A-5P | 99.90 | 71.34 | 2923 |
| HSA-MIR-374B-5P | 99.90 | 69.98 | 2734 |
| HSA-MIR-4671-3P | 99.88 | 72.46 | 1045 |
| HSA-MIR-12119 | 99.87 | 68.35 | 1653 |
| HSA-MIR-4779 | 99.86 | 66.50 | 1583 |
| HSA-MIR-6079 | 99.84 | 68.54 | 1170 |
| HSA-MIR-3663-3P | 99.84 | 70.39 | 798 |
| HSA-MIR-4799-5P | 99.82 | 70.60 | 2663 |
| HSA-MIR-6817-3P | 99.79 | 68.35 | 2126 |
| HSA-MIR-577 | 99.78 | 69.13 | 2479 |
| HSA-MIR-4524A-3P | 99.72 | 66.85 | 2406 |
| HSA-MIR-4530 | 99.69 | 66.47 | 1509 |
| HSA-MIR-1283 | 99.69 | 72.42 | 3009 |
| HSA-MIR-3660 | 99.68 | 67.33 | 1149 |
| HSA-MIR-4526 | 99.68 | 67.07 | 1136 |
| HSA-MIR-5093 | 99.67 | 69.26 | 2291 |
Literature-anchored findings (GeneRIF, showing 3)
- Opposite associations of osteoprotegerin and ZBTB40 polymorphisms with bone mineral density of the hip in postmenopausal Taiwanese women. (PMID:22824048)
- Risk Variants in or Near ZBTB40 AND NFATC1 Increase the Risk of Both IBD and Adverse Bone Health Outcomes Highlighting Common Genetic Underpinnings Across Both Diseases. (PMID:36680554)
- ZBTB40 is a telomere-associated protein and protects telomeres in human ALT cells. (PMID:37454741)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | zbtb40 | ENSDARG00000091762 |
| mus_musculus | Zbtb40 | ENSMUSG00000060862 |
| rattus_norvegicus | Zbtb40 | ENSRNOG00000022039 |
| drosophila_melanogaster | CG15336 | FBGN0030009 |
| drosophila_melanogaster | CG44002 | FBGN0264744 |
Protein
Protein identifiers
Zinc finger and BTB domain-containing protein 40 — Q9NUA8 (reviewed: Q9NUA8)
All UniProt accessions (4): Q9NUA8, A0A3B3IRZ6, B1AKC8, F8WAI8
UniProt curated annotations — full annotation on UniProt →
Function. May be involved in transcriptional regulation.
Subcellular location. Nucleus.
Similarity. Belongs to the krueppel C2H2-type zinc-finger protein family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9NUA8-1 | 1 | yes |
| Q9NUA8-2 | 2 |
RefSeq proteins (3): NP_001077090, NP_001317327, NP_055685* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000210 | BTB/POZ_dom | Domain |
| IPR011333 | SKP1/BTB/POZ_sf | Homologous_superfamily |
| IPR013087 | Znf_C2H2_type | Domain |
| IPR030404 | ZBTB40_BTB_POZ_dom | Domain |
| IPR036236 | Znf_C2H2_sf | Homologous_superfamily |
Pfam: PF00096, PF00651, PF12874
UniProt features (33 total): zinc finger region 12, compositionally biased region 5, sequence variant 4, region of interest 3, splice variant 3, modified residue 2, chain 1, domain 1, cross-link 1, sequence conflict 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9NUA8-F1 | 66.33 | 0.00 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (3): 190, 703, 1066
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 182 (showing top):
TGGTGCT_MIR29A_MIR29B_MIR29C, MORF_FLT1, MORF_MSH3, MORF_BRCA1, TGACCTY_ERR1_Q2, YY1_Q6, GGCNKCCATNK_UNKNOWN, MORF_RAD51L3, COUP_01, FREAC3_01, GOBP_BONE_MINERALIZATION, MORF_CTSB, YY1_02, MORF_PRKCA, HNF4_DR1_Q3
GO Biological Process (3): regulation of transcription by RNA polymerase II (GO:0006357), DNA damage response (GO:0006974), bone mineralization (GO:0030282)
GO Molecular Function (5): DNA-binding transcription factor activity, RNA polymerase II-specific (GO:0000981), DNA binding (GO:0003677), zinc ion binding (GO:0008270), protein binding (GO:0005515), metal ion binding (GO:0046872)
GO Cellular Component (1): nucleus (GO:0005634)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| regulation of DNA-templated transcription | 1 |
| transcription by RNA polymerase II | 1 |
| cellular response to stress | 1 |
| ossification | 1 |
| biomineral tissue development | 1 |
| chromatin | 1 |
| RNA polymerase II transcription regulatory region sequence-specific DNA binding | 1 |
| DNA-binding transcription factor activity | 1 |
| regulation of transcription by RNA polymerase II | 1 |
| nucleic acid binding | 1 |
| transition metal ion binding | 1 |
| binding | 1 |
| cation binding | 1 |
| intracellular membrane-bounded organelle | 1 |
Protein interactions and networks
STRING
1372 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ZBTB40 | WRAP73 | Q9P2S5 | 826 |
| ZBTB40 | MEGF6 | O75095 | 763 |
| ZBTB40 | LRP5 | O75197 | 682 |
| ZBTB40 | CYP17A1 | P05093 | 619 |
| ZBTB40 | MIMS1 | Q96ND0 | 592 |
| ZBTB40 | TNFSF11 | O14788 | 584 |
| ZBTB40 | AKAP11 | Q9UKA4 | 580 |
| ZBTB40 | DCDC1 | P59894 | 580 |
| ZBTB40 | CCDC170 | Q8IYT3 | 571 |
| ZBTB40 | STARD3NL | O95772 | 545 |
| ZBTB40 | TMEM135 | Q86UB9 | 536 |
| ZBTB40 | HROB | Q8N3J3 | 530 |
| ZBTB40 | CD3D | P04234 | 521 |
| ZBTB40 | FOXL1 | Q12952 | 507 |
| ZBTB40 | SPTBN1 | Q01082 | 507 |
IntAct
25 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| ZNF576 | ZBED1 | psi-mi:“MI:0914”(association) | 0.640 |
| IER2 | KPNA3 | psi-mi:“MI:0914”(association) | 0.530 |
| ZNF689 | ZNF593 | psi-mi:“MI:0914”(association) | 0.530 |
| IER2 | KPNA4 | psi-mi:“MI:0914”(association) | 0.530 |
| Dlg4 | ZBTB40 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| ZBTB40 | H2BC20P | psi-mi:“MI:0915”(physical association) | 0.400 |
| CDC37 | ZBTB40 | psi-mi:“MI:0915”(physical association) | 0.400 |
| FOXB1 | DDX39A | psi-mi:“MI:0914”(association) | 0.350 |
| NELL2 | MATN2 | psi-mi:“MI:0914”(association) | 0.350 |
| A1BG | WDR62 | psi-mi:“MI:0914”(association) | 0.350 |
| FBLN5 | ZNF320 | psi-mi:“MI:0914”(association) | 0.350 |
| TEX19 | ZNF316 | psi-mi:“MI:0914”(association) | 0.350 |
| TRIM45 | RABEP2 | psi-mi:“MI:0914”(association) | 0.350 |
| AFG2B | MMP24OS | psi-mi:“MI:0914”(association) | 0.350 |
| ZNF689 | TRIM28 | psi-mi:“MI:0914”(association) | 0.350 |
| ELF2 | SETD1A | psi-mi:“MI:2364”(proximity) | 0.270 |
| NFIX | TAF4 | psi-mi:“MI:2364”(proximity) | 0.270 |
| FHL1 | ZBTB40 | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (30): ZBTB40 (Affinity Capture-MS), ZBTB40 (Affinity Capture-MS), ZBTB40 (Affinity Capture-MS), ZBTB40 (Affinity Capture-MS), ZBTB40 (Affinity Capture-MS), ZBTB40 (Affinity Capture-MS), ZBTB40 (Affinity Capture-MS), ZBTB40 (Affinity Capture-RNA), ZBTB40 (Proximity Label-MS), ZBTB40 (Proximity Label-MS), ZBTB40 (Two-hybrid), ZBTB40 (Positive Genetic), ZBTB40 (Affinity Capture-MS), ZBTB40 (Affinity Capture-MS), ZBTB40 (Affinity Capture-MS)
ESM2 similar proteins: A0A140LI67, A0JN76, A1L2U9, A2A5N8, A2AJ77, A6QPM3, B1WAZ8, B8A5Y1, D3ZWK4, E9Q3T6, E9Q8T2, O15060, O88866, O94966, P0C2N6, P57058, Q05516, Q0IH98, Q0IJ29, Q3B725, Q3TES0, Q3UZD5, Q4R739, Q60760, Q68UT7, Q6NZK8, Q6P2A1, Q6P4K6, Q6Q783, Q6S5L9, Q6YND2, Q76M68, Q7ZWZ4, Q80X44, Q8BXX2, Q8N680, Q8NE63, Q96CK0, Q99592, Q9GZV8
Diamond homologs: A0JN76, A1L2U9, A1YEX3, A1YPR0, A2AAX3, B1WAZ8, B1WBS3, B1WBU4, B2RXF5, D3ZA50, O14867, O15062, O15156, O15209, O43167, O43298, O43829, O88282, O88939, O93567, O95365, P24278, P41182, P41183, P52739, P97302, P97303, Q08376, Q0IH98, Q0IJ29, Q0P4X6, Q0VCJ6, Q13105, Q14526, Q1H9T6, Q1L8W0, Q2T9Z7, Q3B725, Q3B7N9, Q3SWU4
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
187 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 143 |
| Likely benign | 16 |
| Benign | 5 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
3360 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:22491480:G:GT | donor_gain | 1.0000 |
| 1:22491529:AGGAG:A | donor_loss | 1.0000 |
| 1:22491530:GGAG:G | donor_gain | 1.0000 |
| 1:22491530:GGAGG:G | donor_loss | 1.0000 |
| 1:22491531:G:GT | donor_gain | 1.0000 |
| 1:22491532:AG:A | donor_loss | 1.0000 |
| 1:22491533:GGTA:G | donor_loss | 1.0000 |
| 1:22491535:T:A | donor_loss | 1.0000 |
| 1:22502440:GG:G | donor_gain | 1.0000 |
| 1:22502441:GG:G | donor_gain | 1.0000 |
| 1:22502451:TC:T | donor_gain | 1.0000 |
| 1:22506043:CTGCA:C | acceptor_loss | 1.0000 |
| 1:22506044:TGCAG:T | acceptor_loss | 1.0000 |
| 1:22506046:CAG:C | acceptor_loss | 1.0000 |
| 1:22506047:A:C | acceptor_loss | 1.0000 |
| 1:22506048:G:GT | acceptor_loss | 1.0000 |
| 1:22508727:GGCAG:G | donor_gain | 1.0000 |
| 1:22508728:GCAG:G | donor_gain | 1.0000 |
| 1:22508728:GCAGG:G | donor_gain | 1.0000 |
| 1:22508729:CAGG:C | donor_loss | 1.0000 |
| 1:22508731:GGT:G | donor_loss | 1.0000 |
| 1:22508732:G:GA | donor_loss | 1.0000 |
| 1:22508732:G:GG | donor_gain | 1.0000 |
| 1:22508733:T:A | donor_loss | 1.0000 |
| 1:22509098:A:AG | acceptor_gain | 1.0000 |
| 1:22509098:AGT:A | acceptor_gain | 1.0000 |
| 1:22509099:G:GA | acceptor_gain | 1.0000 |
| 1:22509099:GT:G | acceptor_gain | 1.0000 |
| 1:22509099:GTG:G | acceptor_gain | 1.0000 |
| 1:22509099:GTGA:G | acceptor_gain | 1.0000 |
AlphaMissense
8177 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 1:22512098:T:C | C809R | 1.000 |
| 1:22512107:T:C | C812R | 1.000 |
| 1:22512119:T:C | F816L | 1.000 |
| 1:22512120:T:C | F816S | 1.000 |
| 1:22512120:T:G | F816C | 1.000 |
| 1:22512121:T:A | F816L | 1.000 |
| 1:22512121:T:G | F816L | 1.000 |
| 1:22512924:G:A | G821D | 1.000 |
| 1:22512932:T:C | Y824H | 1.000 |
| 1:22512933:A:G | Y824C | 1.000 |
| 1:22512935:C:A | H825N | 1.000 |
| 1:22512935:C:G | H825D | 1.000 |
| 1:22512952:C:A | H830Q | 1.000 |
| 1:22512952:C:G | H830Q | 1.000 |
| 1:22512995:T:C | F845L | 1.000 |
| 1:22512996:T:C | F845S | 1.000 |
| 1:22512996:T:G | F845C | 1.000 |
| 1:22512997:T:A | F845L | 1.000 |
| 1:22512997:T:G | F845L | 1.000 |
| 1:22513021:C:A | N853K | 1.000 |
| 1:22513021:C:G | N853K | 1.000 |
| 1:22513022:C:A | H854N | 1.000 |
| 1:22513022:C:G | H854D | 1.000 |
| 1:22513024:C:A | H854Q | 1.000 |
| 1:22513024:C:G | H854Q | 1.000 |
| 1:22513052:T:C | F864L | 1.000 |
| 1:22513054:C:A | F864L | 1.000 |
| 1:22513054:C:G | F864L | 1.000 |
| 1:22513058:T:C | C866R | 1.000 |
| 1:22513079:T:C | F873L | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000091543 (1:22491716 C>A,G,T), RS1000113247 (1:22468281 C>T), RS1000120516 (1:22509348 T>C,G), RS1000132416 (1:22442401 T>C), RS1000161790 (1:22439465 T>G), RS1000173923 (1:22452184 C>G), RS1000180162 (1:22495181 G>A), RS1000221244 (1:22502338 T>G), RS1000301557 (1:22531629 C>T), RS1000303673 (1:22451193 C>T), RS1000338388 (1:22475123 C>A,T), RS1000367014 (1:22489672 G>A), RS1000371569 (1:22452376 T>C), RS1000458561 (1:22443993 A>G), RS1000526125 (1:22526780 A>G)
Disease associations
OMIM: gene MIM:612106 | disease phenotypes:
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| neurodevelopmental disorder | Limited | Autosomal recessive |
Mondo (1): neurodevelopmental disorder (MONDO:0700092)
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
29 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000180_1 | Bone mineral density (spine) | 9.000000e-09 |
| GCST000181_3 | Bone mineral density (hip) | 5.000000e-16 |
| GCST000494_3 | Bone mineral density (spine) | 3.000000e-10 |
| GCST000495_1 | Bone mineral density (hip) | 9.000000e-08 |
| GCST001050_3 | Bone mineral density | 9.000000e-07 |
| GCST001050_7 | Bone mineral density | 1.000000e-06 |
| GCST001894_8 | Endometriosis | 3.000000e-09 |
| GCST002276_11 | Bone mineral density | 3.000000e-08 |
| GCST002276_13 | Bone mineral density | 3.000000e-13 |
| GCST004858_2 | Dupuytren’s disease | 3.000000e-15 |
| GCST005146_25 | Birth weight | 1.000000e-09 |
| GCST005795_12 | Femoral neck bone mineral density | 1.000000e-20 |
| GCST005796_1 | Lumbar spine bone mineral density | 5.000000e-18 |
| GCST006143_17 | Bone mineral density (total hip) | 8.000000e-09 |
| GCST006288_100 | Heel bone mineral density | 3.000000e-25 |
| GCST006288_251 | Heel bone mineral density | 8.000000e-16 |
| GCST006288_598 | Heel bone mineral density | 1.000000e-50 |
| GCST006288_599 | Heel bone mineral density | 7.000000e-36 |
| GCST006288_705 | Heel bone mineral density | 1.000000e-25 |
| GCST006288_706 | Heel bone mineral density | 8.000000e-20 |
| GCST006979_864 | Heel bone mineral density | 1.000000e-139 |
| GCST006979_865 | Heel bone mineral density | 2.000000e-25 |
| GCST007014_2 | Lumbar spine bone mineral density (trabecular) | 1.000000e-10 |
| GCST007015_11 | Lumbar spine bone mineral density (integral) | 1.000000e-10 |
| GCST007691_20 | Femoral neck bone mineral density | 7.000000e-57 |
| GCST007935_5 | Medication use (drugs affecting bone structure and mineralization) | 2.000000e-08 |
| GCST008662_14 | Lung function in never smokers (low FEV1 vs high FEV1) | 2.000000e-07 |
| GCST009439_10 | Age-related cognitive decline (language) (slope of z-scores) | 9.000000e-06 |
| GCST012048_1 | Triglyceride levels | 7.000000e-07 |
EFO canonical traits (11, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004229 | Dupuytren Contracture |
| EFO:0004344 | birth weight |
| EFO:0007785 | femoral neck bone mineral density |
| EFO:0007701 | spine bone mineral density |
| EFO:0007702 | hip bone mineral density |
| EFO:0009270 | heel bone mineral density |
| EFO:0007620 | volumetric bone mineral density |
| EFO:0009936 | Drugs affecting bone structure and mineralization use measurement |
| EFO:0004314 | forced expiratory volume |
| EFO:0007710 | cognitive decline measurement |
| EFO:0004530 | triglyceride measurement |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D065886 | Neurodevelopmental Disorders | F03.625 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL5069378 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
37 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | increases expression, affects cotreatment, increases abundance | 5 |
| Arsenic | affects cotreatment, increases abundance, increases expression | 2 |
| Benzo(a)pyrene | decreases methylation, increases mutagenesis | 2 |
| aristolochic acid I | increases expression | 1 |
| FR900359 | increases phosphorylation | 1 |
| dicrotophos | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| alpha-pinene | affects cotreatment, decreases expression, increases abundance | 1 |
| bisphenol A | decreases methylation | 1 |
| tris(2-butoxyethyl) phosphate | affects expression | 1 |
| manganese chloride | affects cotreatment, increases abundance, increases expression | 1 |
| methacrylaldehyde | affects cotreatment, decreases expression, increases abundance | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| ICG 001 | increases expression | 1 |
| abrine | increases expression | 1 |
| 4-(4-((5-(4,5-dimethyl-2-nitrophenyl)-2-furanyl)methylene)-4,5-dihydro-3-methyl-5-oxo-1H-pyrazol-1-yl)benzoic acid | increases expression | 1 |
| Vorinostat | decreases expression | 1 |
| Acrolein | increases abundance, affects cotreatment, decreases expression | 1 |
| Air Pollutants | affects cotreatment, decreases expression, increases abundance | 1 |
| Atrazine | decreases expression | 1 |
| Caffeine | increases phosphorylation | 1 |
| Doxorubicin | decreases expression | 1 |
| Endosulfan | decreases expression | 1 |
| Folic Acid | decreases expression | 1 |
| Hydrogen Peroxide | affects expression | 1 |
| Lead | affects expression | 1 |
| Manganese | affects cotreatment, increases abundance, increases expression | 1 |
| Methyl Methanesulfonate | increases expression | 1 |
| Ozone | affects cotreatment, decreases expression, increases abundance | 1 |
ChEMBL screening assays
3 unique, capped per target: 3 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL5059511 | Binding | Proteomics fold change data (SUDHL4 cells, 1h) | Data for DCP probe CCT369260 |
Clinical trials (associated diseases)
202 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT04586348 | PHASE4 | UNKNOWN | Prenatal Iodine Supplementation and Early Childhood Neurodevelopment |
| NCT04873115 | PHASE4 | UNKNOWN | Double-blind, Placebo-controlled, Randomized Clinical Trial Comparing the Efficacy and Safety of Sialanar Plus orAl rehabiLitation Against Placebo Plus Oral Rehabilitation for chIldren and Adolescents With seVere Sialorrhoea and Neurodisabilties, |
| NCT02559102 | PHASE3 | COMPLETED | Dexmedetomidine Sedation Versus General Anaesthesia for Inguinal Hernia Surgery in Infants |
| NCT02757079 | PHASE3 | COMPLETED | Study of the Efficacy and Safety of NPC-15 for Sleep Disorders of Children With Neurodevelopmental Disorders |
| NCT06915480 | PHASE3 | RECRUITING | Reducing Missed Appointments |
| NCT07377032 | PHASE3 | RECRUITING | TAP-GRIN: Interventional Study on Patients With GRIN-related Neurodevelopmental Disorders |
| NCT02909959 | PHASE2 | COMPLETED | Sulforaphane for the Treatment of Young Men With Autism Spectrum Disorder |
| NCT06081348 | PHASE2 | RECRUITING | Sertraline vs. Placebo in the Treatment of Anxiety in Children and AdoLescents With NeurodevelopMental Disorders |
| NCT06352372 | PHASE2 | COMPLETED | Safety and Efficacy of tPBM for Epileptiform Activity in Autism |
| NCT00503191 | PHASE1 | COMPLETED | NeuroModulation Technique Treatment of Autism |
| NCT04475848 | PHASE1 | COMPLETED | A Study to Investigate the Safety, Tolerability, Pharmacokinetics, Pharmacodynamics and Food Effect of RO6953958 in Healthy Participants |
| NCT06300398 | PHASE1 | COMPLETED | IAMA-6 Oral Dose Study in Healthy Adults |
| NCT01783041 | PHASE2/PHASE3 | COMPLETED | Effect of Early L-Carnitine Supplementation on Neurodevelopmental Outcomes in Very Preterm Infants |
| NCT05767385 | PHASE2/PHASE3 | RECRUITING | Fetal Cerebrovascular Autoregulation in Congenital Heart Disease and Association With Neonatal Neurobehavior |
| NCT05675098 | EARLY_PHASE1 | NOT_YET_RECRUITING | Central Nervous System Stimulants and Physical Function in Children With Cerebral Palsy |
| NCT00783783 | Not specified | COMPLETED | CYP2D6 Pharmacogenetics in Risperidone-Treated Children |
| NCT01778504 | Not specified | RECRUITING | Studying Childhood-onset Behavioral, Psychiatric, and Developmental Disorders |
| NCT01850784 | Not specified | UNKNOWN | High Energy Formula Feeding in Infants With Congenital Heart Disease |
| NCT01922791 | Not specified | COMPLETED | Nutrition and Pregnancy Intervention Study |
| NCT01942525 | Not specified | UNKNOWN | Influence of Intrauterine Growth Restriction on Amplitude-integrated EEG in Preterm Infants |
| NCT02003170 | Not specified | COMPLETED | Etiology and Early Diagnosis of Neurodevelopmental Disorders |
| NCT02118649 | Not specified | ACTIVE_NOT_RECRUITING | Enhancing Behavior and Brain Response to Visual Targets Using a Computer Game |
| NCT02557191 | Not specified | TERMINATED | Biomarkers, Neurodevelopment and Preterm Infants |
| NCT02690675 | Not specified | COMPLETED | Iron Supplement Effect on Child Development |
| NCT02694003 | Not specified | COMPLETED | Better Nights, Better Days for Children With Neurodevelopment Disorders |
| NCT02792894 | Not specified | COMPLETED | Family Networks (FaNs) for Children With Developmental Disorders and Delays |
| NCT02871674 | Not specified | UNKNOWN | Good Night Project: Behavioural Sleep Interventions for Children With ADHD: A Randomised Controlled Trial |
| NCT02887157 | Not specified | COMPLETED | Analyzing Retinal Microanatomy in ROP |
| NCT02898298 | Not specified | COMPLETED | Positive Emotion Regulation Training in Children, Adolescents and Young Adults With and Without Developmental Disorder |
| NCT02912780 | Not specified | UNKNOWN | Introduction of Microsystems in a Level 3 Neonatal Intensive Care Unit |
| NCT03023293 | Not specified | COMPLETED | n-3 PUFAs, Irisin and Maternal Glucose Metabolism From Pregnancy to Postpartum |
| NCT03023644 | Not specified | COMPLETED | Improving Neurodevelopmental Outcomes in Children With Congenital Heart Disease: An Intervention Study |
| NCT03032991 | Not specified | UNKNOWN | Early Biomarkers of Neurodevelopment in Offspring of Diabetic Mothers |
| NCT03088189 | Not specified | TERMINATED | Effect of Parental Peri-conceptional Vitamin B12 Supplementation on Infant Neurocognitive Development in Offspring |
| NCT03096028 | Not specified | COMPLETED | Developmental Origins of Mental Health Disorders |
| NCT03148782 | Not specified | COMPLETED | Brain Plasticity Underlying Acquisition of New Organizational Skills in Children-R61 Phase |
| NCT03172104 | Not specified | COMPLETED | Neurobehavioural Development of Infants Born <30 Weeks Gestational Age Between Birth and Five Years of Age |
| NCT03222375 | Not specified | RECRUITING | SQUED™ Series 28.1 Home-use and Treatment of Autowave Reverberator of Autism |
| NCT03229928 | Not specified | COMPLETED | Clinical Testing of a Real-Time Behavior Measurement Tool: Measuring Outcomes for CHAnge |
| NCT03232489 | Not specified | UNKNOWN | Study for the Evaluation of the Feasibility of Applying Advanced MRI Scanning in Pediatric Clinical Practice |
Related Atlas pages
- Associated diseases: neurodevelopmental disorder
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): endometriosis