ZDHHC20-IT1

Summary

ZDHHC20-IT1 (ZDHHC20 intronic transcript 1, HGNC:39900) is a long non-coding RNA gene on chromosome 13q12.11.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:39900
Approved symbol	ZDHHC20-IT1
Name	ZDHHC20 intronic transcript 1
Location	13q12.11
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000236953
Ensembl biotype	lncRNA
Entrez	100874367
RNAcentral	URS0000214ED3 — lncRNA, 440 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000417513

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000417513 — 2 exons

Exon	Start	End
ENSE00001634476	21376977	21377208
ENSE00001802240	21377667	21377874

Expression profiles

Bgee: expression breadth ubiquitous, 131 present calls, max score 90.68.

Top tissues by expression

131 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sural nerve	UBERON:0015488	90.68	gold quality
right uterine tube	UBERON:0001302	88.36	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	82.20	gold quality
apex of heart	UBERON:0002098	79.81	gold quality
fundus of stomach	UBERON:0001160	78.66	gold quality
right lobe of thyroid gland	UBERON:0001119	78.57	gold quality
vagina	UBERON:0000996	78.19	gold quality
primary visual cortex	UBERON:0002436	78.06	gold quality
superior frontal gyrus	UBERON:0002661	77.81	gold quality
blood	UBERON:0000178	77.49	gold quality
monocyte	CL:0000576	77.38	gold quality
minor salivary gland	UBERON:0001830	77.10	gold quality
esophagus mucosa	UBERON:0002469	76.67	gold quality
body of stomach	UBERON:0001161	76.56	gold quality
leukocyte	CL:0000738	76.46	gold quality
metanephros cortex	UBERON:0010533	76.26	gold quality
ectocervix	UBERON:0012249	76.19	gold quality
saliva-secreting gland	UBERON:0001044	76.17	gold quality
substantia nigra	UBERON:0002038	76.08	gold quality
bone marrow	UBERON:0002371	75.50	gold quality
tibial nerve	UBERON:0001323	75.47	gold quality
lower esophagus mucosa	UBERON:0035834	75.47	gold quality
thyroid gland	UBERON:0002046	75.39	gold quality
right hemisphere of cerebellum	UBERON:0014890	75.35	gold quality
upper lobe of left lung	UBERON:0008952	75.32	gold quality
liver	UBERON:0002107	75.13	gold quality
left lobe of thyroid gland	UBERON:0001120	75.00	gold quality
cerebellum	UBERON:0002037	74.98	gold quality
pituitary gland	UBERON:0000007	74.88	gold quality
stomach	UBERON:0000945	74.76	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.95

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.