ZKSCAN2-DT

Summary

ZKSCAN2-DT (ZKSCAN2 divergent transcript, HGNC:53912) is a long non-coding RNA gene on chromosome 16p12.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53912
Approved symbol	ZKSCAN2-DT
Name	ZKSCAN2 divergent transcript
Location	16p12.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	CTD-2547G23.4
Ensembl gene	ENSG00000274925
Ensembl biotype	lncRNA
Entrez	112577464
RNAcentral	URS0002123142 — lncRNA, 3490 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000612792, ENST00000819917, ENST00000819918, ENST00000819919

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000612792 — 1 exons

Exon	Start	End
ENSE00003718143	25257952	25261066

Expression profiles

Bgee: expression breadth ubiquitous, 160 present calls, max score 76.55.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 2.2270 / max 89.2489, expressed in 1029 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
153275	2.2270	1029

Top tissues by expression

234 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
buccal mucosa cell	CL:0002336	76.55	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	76.49	silver quality
right uterine tube	UBERON:0001302	73.18	gold quality
mucosa of transverse colon	UBERON:0004991	72.66	gold quality
right lobe of thyroid gland	UBERON:0001119	71.54	gold quality
body of uterus	UBERON:0009853	70.70	gold quality
left lobe of thyroid gland	UBERON:0001120	70.64	gold quality
metanephros cortex	UBERON:0010533	70.28	gold quality
colonic epithelium	UBERON:0000397	70.20	silver quality
thyroid gland	UBERON:0002046	70.19	gold quality
left ovary	UBERON:0002119	70.12	gold quality
right ovary	UBERON:0002118	69.87	gold quality
right hemisphere of cerebellum	UBERON:0014890	69.85	gold quality
cerebellar hemisphere	UBERON:0002245	69.66	gold quality
cerebellar cortex	UBERON:0002129	69.55	gold quality
gastrocnemius	UBERON:0001388	69.47	gold quality
bone marrow cell	CL:0002092	69.17	silver quality
endocervix	UBERON:0000458	69.04	gold quality
spleen	UBERON:0002106	68.76	gold quality
muscle of leg	UBERON:0001383	68.73	gold quality
lower esophagus mucosa	UBERON:0035834	68.60	gold quality
cerebellum	UBERON:0002037	68.52	gold quality
pituitary gland	UBERON:0000007	68.46	gold quality
right coronary artery	UBERON:0001625	68.27	gold quality
small intestine Peyer’s patch	UBERON:0003454	68.06	gold quality
adenohypophysis	UBERON:0002196	67.83	gold quality
minor salivary gland	UBERON:0001830	67.71	gold quality
transverse colon	UBERON:0001157	67.57	gold quality
cortex of kidney	UBERON:0001225	67.37	gold quality
stromal cell of endometrium	CL:0002255	67.17	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	3.20

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.