ZKSCAN5
gene geneOn this page
Also known as ZNF914ZSCAN37
Summary
ZKSCAN5 (zinc finger with KRAB and SCAN domains 5, HGNC:12867) is a protein-coding gene on chromosome 7q22.1, encoding Zinc finger protein with KRAB and SCAN domains 5 (Q9Y2L8). May be involved in transcriptional regulation.
This gene encodes a zinc finger protein of the Kruppel family. The protein contains a SCAN box and a KRAB A domain and may be involved in transcriptional regulation. A similar protein in mouse is differentially expressed in spermatogenesis. Alternative splicing results in multiple transcript variants.
Source: NCBI Gene 23660 — RefSeq curated summary.
At a glance
- GWAS associations: 18
- Clinical variants (ClinVar): 100 total
- MANE Select transcript:
NM_145102
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:12867 |
| Approved symbol | ZKSCAN5 |
| Name | zinc finger with KRAB and SCAN domains 5 |
| Location | 7q22.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | ZNF914, ZSCAN37 |
| Ensembl gene | ENSG00000196652 |
| Ensembl biotype | protein_coding |
| OMIM | 611272 |
| Entrez | 23660 |
Gene structure
Transcript identifiers
Ensembl transcripts: 20 — 19 protein_coding, 1 nonsense_mediated_decay
ENST00000326775, ENST00000394170, ENST00000451158, ENST00000454175, ENST00000864572, ENST00000864573, ENST00000864574, ENST00000864575, ENST00000864576, ENST00000864577, ENST00000925936, ENST00000925937, ENST00000925938, ENST00000925939, ENST00000925940, ENST00000925941, ENST00000925942, ENST00000925943, ENST00000970506, ENST00000970507
RefSeq mRNA: 5 — MANE Select: NM_145102
NM_001318082, NM_001318083, NM_001318084, NM_014569, NM_145102
CCDS: CCDS5667
Canonical transcript exons
ENST00000326775 — 7 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000708266 | 99519827 | 99519909 |
| ENSE00001102972 | 99520169 | 99520304 |
| ENSE00001289080 | 99504662 | 99504733 |
| ENSE00001375021 | 99506005 | 99506458 |
| ENSE00001385326 | 99512453 | 99512591 |
| ENSE00001866398 | 99531108 | 99534700 |
| ENSE00003496204 | 99525813 | 99526418 |
Expression profiles
Bgee: expression breadth ubiquitous, 233 present calls, max score 88.00.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 7.8459 / max 78.0778, expressed in 1772 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 79883 | 4.6478 | 1664 |
| 79881 | 1.6068 | 1026 |
| 79882 | 1.5913 | 970 |
Top tissues by expression
277 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| tendon of biceps brachii | UBERON:0008188 | 88.00 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 84.03 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 83.64 | gold quality |
| ventricular zone | UBERON:0003053 | 83.47 | gold quality |
| ganglionic eminence | UBERON:0004023 | 82.70 | gold quality |
| cortical plate | UBERON:0005343 | 82.25 | gold quality |
| sperm | CL:0000019 | 82.05 | gold quality |
| stromal cell of endometrium | CL:0002255 | 80.06 | gold quality |
| male germ cell | CL:0000015 | 79.37 | gold quality |
| tendon | UBERON:0000043 | 78.82 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 77.91 | gold quality |
| adrenal tissue | UBERON:0018303 | 77.76 | gold quality |
| islet of Langerhans | UBERON:0000006 | 77.61 | gold quality |
| gastrocnemius | UBERON:0001388 | 77.50 | gold quality |
| muscle of leg | UBERON:0001383 | 77.46 | gold quality |
| calcaneal tendon | UBERON:0003701 | 76.74 | gold quality |
| granulocyte | CL:0000094 | 76.48 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 76.44 | gold quality |
| endothelial cell | CL:0000115 | 76.42 | silver quality |
| cerebellar cortex | UBERON:0002129 | 76.41 | gold quality |
| embryo | UBERON:0000922 | 76.09 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 75.58 | gold quality |
| prefrontal cortex | UBERON:0000451 | 75.34 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 75.15 | gold quality |
| cerebellum | UBERON:0002037 | 75.12 | gold quality |
| right adrenal gland | UBERON:0001233 | 75.04 | gold quality |
| leukocyte | CL:0000738 | 74.88 | gold quality |
| testis | UBERON:0000473 | 74.65 | gold quality |
| monocyte | CL:0000576 | 74.52 | gold quality |
| secondary oocyte | CL:0000655 | 74.51 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 3.30 |
Regulation
Is transcription factor: yes
JASPAR motifs
| Motif | Name | Family |
|---|---|---|
| MA1652.1 | ZKSCAN5 | Factors with multiple dispersed zinc fingers |
| MA1652.2 | ZKSCAN5 | Factors with multiple dispersed zinc fingers |
JASPAR matrix evidence (PMIDs): PMID:23354101
miRNA regulators (miRDB)
63 targeting ZKSCAN5, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4510 | 100.00 | 66.60 | 2050 |
| HSA-MIR-6127 | 100.00 | 66.76 | 2188 |
| HSA-MIR-6129 | 100.00 | 66.46 | 2080 |
| HSA-MIR-6130 | 100.00 | 66.69 | 2012 |
| HSA-MIR-6133 | 100.00 | 66.48 | 2064 |
| HSA-MIR-4768-5P | 100.00 | 69.49 | 2861 |
| HSA-MIR-7110-3P | 100.00 | 73.18 | 2486 |
| HSA-MIR-6833-3P | 100.00 | 70.63 | 3197 |
| HSA-MIR-6758-5P | 100.00 | 66.21 | 1470 |
| HSA-MIR-223-3P | 99.99 | 70.14 | 1140 |
| HSA-MIR-4482-3P | 99.98 | 72.50 | 3147 |
| HSA-MIR-3065-5P | 99.97 | 71.56 | 3281 |
| HSA-MIR-2110 | 99.96 | 66.68 | 1930 |
| HSA-MIR-3682-5P | 99.93 | 67.97 | 1163 |
| HSA-MIR-6809-3P | 99.91 | 71.45 | 3814 |
| HSA-MIR-345-3P | 99.89 | 70.23 | 1421 |
| HSA-MIR-4302 | 99.89 | 67.94 | 1187 |
| HSA-MIR-4731-5P | 99.89 | 67.23 | 2537 |
| HSA-MIR-605-3P | 99.88 | 69.22 | 1833 |
| HSA-MIR-4728-5P | 99.85 | 69.39 | 4718 |
| HSA-MIR-6715A-3P | 99.83 | 68.05 | 1473 |
| HSA-MIR-6785-5P | 99.82 | 68.68 | 4428 |
| HSA-MIR-4319 | 99.76 | 69.83 | 2586 |
| HSA-MIR-187-5P | 99.74 | 70.26 | 1404 |
| HSA-MIR-3913-3P | 99.74 | 66.53 | 938 |
| HSA-MIR-6505-5P | 99.73 | 69.25 | 1595 |
| HSA-MIR-149-3P | 99.72 | 68.22 | 3963 |
| HSA-MIR-6883-5P | 99.69 | 68.05 | 3785 |
| HSA-MIR-1283 | 99.69 | 72.42 | 3009 |
| HSA-MIR-670-5P | 99.67 | 69.94 | 1565 |
Literature-anchored findings (GeneRIF, showing 2)
- Shorter telomeres increase chronic obstructive pulmonary disease (COPD) risk and the zinc finger protein 95 homolog ZFP95 (ZNF208) polymorphism affects telomere length in COPD patients. (PMID:30397981)
- ZKSCAN5 activates LAPTM5 expression by recruiting SETD7 to promote metastasis in pancreatic ductal adenocarcinoma. (PMID:38018874)
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Zkscan5 | ENSMUSG00000055991 |
| rattus_norvegicus | Zkscan5 | ENSRNOG00000059552 |
Paralogs (176): ZNF195 (ENSG00000005801), ZNF112 (ENSG00000062370), ZNF275 (ENSG00000063587), ZNF37A (ENSG00000075407), ZNF510 (ENSG00000081386), ZNF506 (ENSG00000081665), ZNF268 (ENSG00000090612), MZF1 (ENSG00000099326), ZNF629 (ENSG00000102870), ZNF175 (ENSG00000105497), ZNF85 (ENSG00000105750), ZFP30 (ENSG00000120784), ZNF45 (ENSG00000124459), ZNF391 (ENSG00000124613), ZNF436 (ENSG00000125945), ZNF484 (ENSG00000127081), ZNF835 (ENSG00000127903), ZNF780B (ENSG00000128000), ZSCAN10 (ENSG00000130182), ZNF317 (ENSG00000130803), ZNF331 (ENSG00000130844), ZNF227 (ENSG00000131115), ZNF141 (ENSG00000131127), ZNF132 (ENSG00000131849), ZNF189 (ENSG00000136870), ZIM3 (ENSG00000141946), ZFP14 (ENSG00000142065), ZNF514 (ENSG00000144026), ZNF300 (ENSG00000145908), RBAK (ENSG00000146587), ZNF157 (ENSG00000147117), ZNF182 (ENSG00000147118), ZNF41 (ENSG00000147124), ZNF7 (ENSG00000147789), ZNF117 (ENSG00000152926), ZNF221 (ENSG00000159905), ZNF235 (ENSG00000159917), ZNF714 (ENSG00000160352), ZNF577 (ENSG00000161551), ZNF12 (ENSG00000164631)
Protein
Protein identifiers
Zinc finger protein with KRAB and SCAN domains 5 — Q9Y2L8 (reviewed: Q9Y2L8)
Alternative names: Zinc finger protein 95 homolog
All UniProt accessions (2): Q9Y2L8, F8WBD4
UniProt curated annotations — full annotation on UniProt →
Function. May be involved in transcriptional regulation.
Subcellular location. Nucleus.
Similarity. Belongs to the krueppel C2H2-type zinc-finger protein family.
RefSeq proteins (5): NP_001305011, NP_001305012, NP_001305013, NP_055384, NP_659570* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001909 | KRAB | Domain |
| IPR003309 | SCAN_dom | Domain |
| IPR013087 | Znf_C2H2_type | Domain |
| IPR036051 | KRAB_dom_sf | Homologous_superfamily |
| IPR036236 | Znf_C2H2_sf | Homologous_superfamily |
| IPR038269 | SCAN_sf | Homologous_superfamily |
Pfam: PF00096, PF01352, PF02023
UniProt features (57 total): strand 17, zinc finger region 13, helix 10, cross-link 9, turn 4, domain 2, chain 1, modified residue 1
Structure
Experimental structures (PDB)
9 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 2EM5 | SOLUTION NMR | |
| 2EMM | SOLUTION NMR | |
| 2EMZ | SOLUTION NMR | |
| 2EN3 | SOLUTION NMR | |
| 2EOM | SOLUTION NMR | |
| 2EON | SOLUTION NMR | |
| 2EOO | SOLUTION NMR | |
| 2YSO | SOLUTION NMR | |
| 2YTG | SOLUTION NMR |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9Y2L8-F1 | 58.55 | 0.04 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (10): 335, 216, 248, 270, 303, 317, 509, 513, 709, 785
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-212436 | Generic Transcription Pathway |
MSigDB gene sets: 131 (showing top):
GSE45365_NK_CELL_VS_CD8_TCELL_DN, GSE45365_NK_CELL_VS_CD8_TCELL_UP, TTTGTAG_MIR520D, HFH8_01, TGACATY_UNKNOWN, BOGNI_TREATMENT_RELATED_MYELOID_LEUKEMIA_UP, LEE_AGING_NEOCORTEX_DN, MODULE_207, DANG_BOUND_BY_MYC, CETS1P54_01, PARENT_MTOR_SIGNALING_UP, BENPORATH_OCT4_TARGETS, MARSON_BOUND_BY_FOXP3_UNSTIMULATED, BENPORATH_MYC_MAX_TARGETS, SCGGAAGY_ELK1_02
GO Biological Process (3): regulation of DNA-templated transcription (GO:0006355), regulation of transcription by RNA polymerase II (GO:0006357), negative regulation of macromolecule biosynthetic process (GO:0010558)
GO Molecular Function (7): RNA polymerase II cis-regulatory region sequence-specific DNA binding (GO:0000978), DNA-binding transcription factor activity, RNA polymerase II-specific (GO:0000981), DNA-binding transcription factor activity (GO:0003700), zinc ion binding (GO:0008270), DNA binding (GO:0003677), protein binding (GO:0005515), metal ion binding (GO:0046872)
GO Cellular Component (1): nucleus (GO:0005634)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| RNA Polymerase II Transcription | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| regulation of DNA-templated transcription | 2 |
| RNA polymerase II transcription regulatory region sequence-specific DNA binding | 2 |
| DNA-templated transcription | 1 |
| regulation of gene expression | 1 |
| regulation of RNA biosynthetic process | 1 |
| transcription by RNA polymerase II | 1 |
| macromolecule biosynthetic process | 1 |
| negative regulation of biosynthetic process | 1 |
| regulation of macromolecule biosynthetic process | 1 |
| negative regulation of macromolecule metabolic process | 1 |
| cis-regulatory region sequence-specific DNA binding | 1 |
| chromatin | 1 |
| DNA-binding transcription factor activity | 1 |
| regulation of transcription by RNA polymerase II | 1 |
| transcription cis-regulatory region binding | 1 |
| transcription regulator activity | 1 |
| transition metal ion binding | 1 |
| nucleic acid binding | 1 |
| binding | 1 |
| cation binding | 1 |
| intracellular membrane-bounded organelle | 1 |
Protein interactions and networks
STRING
1042 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ZKSCAN5 | CNOT10 | Q9H9A5 | 623 |
| ZKSCAN5 | FCF1 | Q9Y324 | 559 |
| ZKSCAN5 | AMMECR1L | Q6DCA0 | 542 |
| ZKSCAN5 | USP39 | Q53GS9 | 539 |
| ZKSCAN5 | TLK2 | Q86UE8 | 499 |
| ZKSCAN5 | ARPC1A | Q92747 | 492 |
| ZKSCAN5 | DHX16 | O60231 | 490 |
| ZKSCAN5 | NPIPB6 | E9PJ23 | 480 |
| ZKSCAN5 | DDX50 | Q9BQ39 | 473 |
| ZKSCAN5 | NOL7 | Q9UMY1 | 465 |
| ZKSCAN5 | TMUB2 | Q71RG4 | 463 |
| ZKSCAN5 | SLC4A1AP | Q9BWU0 | 460 |
| ZKSCAN5 | GPATCH3 | Q96I76 | 444 |
| ZKSCAN5 | NUDCD3 | Q8IVD9 | 429 |
| ZKSCAN5 | AGK | Q53H12 | 420 |
IntAct
28 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| ZKSCAN5 | GFAP | psi-mi:“MI:0915”(physical association) | 0.560 |
| ZKSCAN5 | GLE1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ZKSCAN5 | ATXN10 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ZKSCAN5 | SPRED1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SUV39H1 | ZKSCAN5 | psi-mi:“MI:0915”(physical association) | 0.510 |
| CRK | ZKSCAN5 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| CCL1 | ZKSCAN5 | psi-mi:“MI:0915”(physical association) | 0.370 |
| ZKSCAN5 | ZBTB9 | psi-mi:“MI:0915”(physical association) | 0.370 |
| ZKSCAN5 | ZSCAN1 | psi-mi:“MI:0915”(physical association) | 0.370 |
| TNNT1 | ZKSCAN5 | psi-mi:“MI:0915”(physical association) | 0.370 |
| ZSCAN20 | ZNF197 | psi-mi:“MI:0914”(association) | 0.350 |
| ZNF232 | ZNF197 | psi-mi:“MI:0914”(association) | 0.350 |
| ZKSCAN5 | DNAJB6 | psi-mi:“MI:0914”(association) | 0.350 |
| ZSCAN21 | IPO8 | psi-mi:“MI:0914”(association) | 0.350 |
| fadL | ZKSCAN5 | psi-mi:“MI:0915”(physical association) | 0.000 |
| ZKSCAN5 | psi-mi:“MI:0915”(physical association) | 0.000 | |
| RBM11 | ZKSCAN5 | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (19): ZKSCAN5 (Affinity Capture-MS), ZKSCAN5 (Affinity Capture-MS), ZKSCAN5 (Affinity Capture-MS), ZKSCAN5 (Affinity Capture-RNA), ZKSCAN5 (Affinity Capture-MS), ZKSCAN5 (Affinity Capture-MS), ZKSCAN5 (Affinity Capture-MS), ZKSCAN5 (Affinity Capture-MS), ZKSCAN5 (Reconstituted Complex), ZKSCAN5 (Protein-peptide), ZKSCAN5 (Two-hybrid), PPA1 (Cross-Linking-MS (XL-MS)), ZBTB9 (Two-hybrid), ZSCAN1 (Two-hybrid), ZKSCAN5 (Two-hybrid)
ESM2 similar proteins: A1YEP8, A1YEV9, A1YFW2, A1YG26, A1YG48, A1YG60, A2T6E3, A2T6V8, A2T712, A2T736, A2T7D2, A2T7F4, A2T7L7, A2T812, A6QNZ0, O14709, O15535, O43296, O43309, P10073, P17023, P17097, P49910, Q07231, Q12901, Q15776, Q16670, Q1LZ87, Q3MJ62, Q53GI3, Q571J5, Q5JNZ3, Q5RAE6, Q5RBX0, Q5RCD9, Q5RJ54, Q7Z7L9, Q86W11, Q8IZ26, Q8NF99
Diamond homologs: A1YEP8, A1YEQ3, A1YEV9, A1YFW2, A1YFW6, A1YG26, A1YG48, A1YG60, A1YGJ4, A1YGK6, A2T6E3, A2T6V8, A2T6W2, A2T712, A2T736, A2T7D2, A2T7D7, A2T7F2, A2T7F4, A2T7L7, A2T812, A6QNZ0, A6QPT6, B2KFW1, O14709, O14771, O14978, O15535, O43309, O60304, O95125, P10073, P17022, P17028, P17029, P17040, P28698, P49910, P51815, P59923
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
100 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 88 |
| Likely benign | 3 |
| Benign | 2 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1328 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 7:99504731:GAG:G | donor_gain | 1.0000 |
| 7:99506455:GCAG:G | donor_gain | 1.0000 |
| 7:99506457:AGGTG:A | donor_loss | 1.0000 |
| 7:99506458:GGTG:G | donor_loss | 1.0000 |
| 7:99506459:G:A | donor_loss | 1.0000 |
| 7:99506460:T:A | donor_loss | 1.0000 |
| 7:99512443:T:TA | acceptor_gain | 1.0000 |
| 7:99512448:GTTA:G | acceptor_loss | 1.0000 |
| 7:99512449:TTA:T | acceptor_loss | 1.0000 |
| 7:99512450:TA:T | acceptor_loss | 1.0000 |
| 7:99512451:A:AG | acceptor_gain | 1.0000 |
| 7:99512452:G:GG | acceptor_gain | 1.0000 |
| 7:99512452:GATT:G | acceptor_gain | 1.0000 |
| 7:99519825:A:AG | acceptor_gain | 1.0000 |
| 7:99519826:G:GG | acceptor_gain | 1.0000 |
| 7:99520168:GAA:G | acceptor_gain | 1.0000 |
| 7:99526414:GAGAT:G | donor_gain | 1.0000 |
| 7:99529654:G:GT | donor_gain | 1.0000 |
| 7:99531107:GGCA:G | acceptor_gain | 1.0000 |
| 7:99504724:T:TA | donor_gain | 0.9900 |
| 7:99504725:G:GA | donor_gain | 0.9900 |
| 7:99504731:GAGGT:G | donor_loss | 0.9900 |
| 7:99504733:GGT:G | donor_loss | 0.9900 |
| 7:99504734:G:GA | donor_loss | 0.9900 |
| 7:99504735:T:G | donor_loss | 0.9900 |
| 7:99505365:A:T | donor_gain | 0.9900 |
| 7:99506003:A:AG | acceptor_gain | 0.9900 |
| 7:99506004:G:GG | acceptor_gain | 0.9900 |
| 7:99506004:GT:G | acceptor_gain | 0.9900 |
| 7:99506461:GAG:G | donor_loss | 0.9900 |
AlphaMissense
0 scored. Top likely-pathogenic:
dbSNP variants (sampled 300 via entrez): RS1000031988 (7:99524869 A>C), RS1000139139 (7:99526988 G>A), RS1000171680 (7:99508258 C>A,T), RS1000350807 (7:99520774 T>G), RS1000424408 (7:99514945 T>G), RS1000500159 (7:99512657 C>T), RS1000544518 (7:99531353 T>G), RS1000552235 (7:99512891 T>C), RS1000561038 (7:99507115 A>G), RS1000582612 (7:99525321 A>G), RS1000648285 (7:99526442 G>A,C,T), RS1000819719 (7:99520040 C>G,T), RS1000828054 (7:99507538 T>C), RS1001142836 (7:99533108 T>G), RS1001230513 (7:99519690 G>T)
Disease associations
OMIM: gene MIM:611272 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
18 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001038_1 | Dehydroepiandrosterone sulphate levels | 3.000000e-36 |
| GCST002925_11 | Sex hormone levels | 2.000000e-14 |
| GCST002925_12 | Sex hormone levels | 2.000000e-07 |
| GCST002925_6 | Sex hormone levels | 6.000000e-14 |
| GCST004730_2 | Facial emotion recognition (sad faces) | 3.000000e-06 |
| GCST005144_1 | Tacrolimus trough concentration in kidney transplant patients | 2.000000e-17 |
| GCST005348_113 | Total body bone mineral density | 1.000000e-08 |
| GCST005795_25 | Femoral neck bone mineral density | 8.000000e-06 |
| GCST005796_12 | Lumbar spine bone mineral density | 1.000000e-08 |
| GCST005830_30 | Hand grip strength | 2.000000e-08 |
| GCST006249_21 | Serum metabolite levels | 4.000000e-11 |
| GCST006249_22 | Serum metabolite levels | 2.000000e-12 |
| GCST009163_1 | Hormone measurements | 2.000000e-08 |
| GCST009163_2 | Hormone measurements | 2.000000e-09 |
| GCST009733_105 | Urinary metabolite levels in chronic kidney disease | 6.000000e-18 |
| GCST009733_120 | Urinary metabolite levels in chronic kidney disease | 2.000000e-12 |
| GCST009733_239 | Urinary metabolite levels in chronic kidney disease | 6.000000e-12 |
| GCST90002407_487 | White blood cell count | 1.000000e-09 |
EFO canonical traits (11, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004730 | hormone measurement |
| EFO:0007001 | dehydroepiandrosterone sulphate measurement |
| EFO:0004908 | testosterone measurement |
| EFO:0008329 | facial emotion recognition measurement |
| EFO:0008458 | tacrolimus measurement |
| EFO:0007785 | femoral neck bone mineral density |
| EFO:0007701 | spine bone mineral density |
| EFO:0006941 | grip strength measurement |
| EFO:0010239 | cortisol:DHEAS ratio measurement |
| EFO:0010240 | dehydroepiandrosterone measurement |
| EFO:0005116 | urinary metabolite measurement |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
32 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| trichostatin A | affects cotreatment, decreases expression | 2 |
| aristolochic acid I | increases expression | 1 |
| 3-((6-(2-methoxyphenyl)pyrimidin-4-yl)amino)phenyl)methane sulfonamide | decreases expression | 1 |
| GSK-J4 | decreases expression | 1 |
| FR900359 | decreases phosphorylation | 1 |
| TAK-243 | increases sumoylation | 1 |
| triphenyl phosphate | affects expression | 1 |
| 2-methyl-4-isothiazolin-3-one | increases expression | 1 |
| sodium arsenite | increases expression | 1 |
| perfluorooctanoic acid | decreases expression | 1 |
| 4-nitroso-N-phenylaniline | affects response to substance | 1 |
| arsenic disulfide | decreases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| perfluorooctane sulfonic acid | decreases expression | 1 |
| perfluoro-n-nonanoic acid | decreases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| perfluorohexanesulfonic acid | decreases expression | 1 |
| abrine | increases expression | 1 |
| dorsomorphin | decreases expression, affects cotreatment | 1 |
| PCI 5002 | affects cotreatment, increases expression | 1 |
| Leflunomide | decreases expression | 1 |
| Copper | affects binding, decreases expression | 1 |
| Disulfiram | affects binding, decreases expression | 1 |
| Doxorubicin | decreases expression | 1 |
| Ethyl Methanesulfonate | increases expression | 1 |
| Methyl Methanesulfonate | increases expression | 1 |
| Tobacco Smoke Pollution | increases expression | 1 |
| Urethane | increases expression | 1 |
| Zinc | affects cotreatment, increases expression | 1 |
| 7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide | decreases expression | 1 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.