ZNF236-DT

Summary

ZNF236-DT (ZNF236 divergent transcript, HGNC:53779) is a long non-coding RNA gene on chromosome 18q23.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53779
Approved symbol	ZNF236-DT
Name	ZNF236 divergent transcript
Location	18q23
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000264278
Ensembl biotype	lncRNA
Entrez	100131655
RNAcentral	URS000075A384 — lncRNA, 1309 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 12 — 12 lncRNA

ENST00000585258, ENST00000622010, ENST00000830425, ENST00000830426, ENST00000830427, ENST00000830428, ENST00000830429, ENST00000830430, ENST00000830431, ENST00000830432, ENST00000830433, ENST00000830434

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000585258 — 3 exons

Exon	Start	End
ENSE00002709281	76794732	76795658
ENSE00002717632	76816755	76816842
ENSE00002727713	76822016	76822295

Expression profiles

Bgee: expression breadth ubiquitous, 152 present calls, max score 75.18.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 4.6678 / max 50.1962, expressed in 1668 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
172490	3.0652	1486
172489	0.9819	701
172491	0.6207	295

Top tissues by expression

241 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
stromal cell of endometrium	CL:0002255	75.18	gold quality
monocyte	CL:0000576	74.00	gold quality
leukocyte	CL:0000738	73.58	gold quality
hindlimb stylopod muscle	UBERON:0004252	69.58	gold quality
granulocyte	CL:0000094	68.57	gold quality
bone marrow cell	CL:0002092	66.82	silver quality
gastrocnemius	UBERON:0001388	66.58	gold quality
muscle of leg	UBERON:0001383	66.51	gold quality
apex of heart	UBERON:0002098	66.41	gold quality
cortical plate	UBERON:0005343	65.86	gold quality
right uterine tube	UBERON:0001302	65.44	gold quality
ventricular zone	UBERON:0003053	64.94	gold quality
ganglionic eminence	UBERON:0004023	62.70	gold quality
right lobe of liver	UBERON:0001114	61.66	gold quality
lower esophagus muscularis layer	UBERON:0035833	61.61	gold quality
lower esophagus	UBERON:0013473	61.57	gold quality
left coronary artery	UBERON:0001626	61.33	gold quality
sural nerve	UBERON:0015488	61.33	silver quality
esophagogastric junction muscularis propria	UBERON:0035841	60.96	gold quality
right atrium auricular region	UBERON:0006631	60.83	gold quality
heart left ventricle	UBERON:0002084	60.78	gold quality
nucleus accumbens	UBERON:0001882	60.75	gold quality
thoracic aorta	UBERON:0001515	60.67	gold quality
ascending aorta	UBERON:0001496	60.66	gold quality
tibial nerve	UBERON:0001323	60.65	gold quality
popliteal artery	UBERON:0002250	60.64	gold quality
tibial artery	UBERON:0007610	60.64	gold quality
aorta	UBERON:0000947	60.53	gold quality
right ovary	UBERON:0002118	60.38	gold quality
cardiac atrium	UBERON:0002081	60.30	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.13

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.