ZNF24
gene geneOn this page
Also known as ZSCAN3Zfp191KOX17
Summary
ZNF24 (zinc finger protein 24, HGNC:13032) is a protein-coding gene on chromosome 18q12.2, encoding Zinc finger protein 24 (P17028). Transcription factor required for myelination of differentiated oligodendrocytes.
Enables DNA-binding transcription activator activity, RNA polymerase II-specific; identical protein binding activity; and sequence-specific DNA binding activity. Involved in negative regulation of DNA-templated transcription and positive regulation of transcription by RNA polymerase II. Located in nucleoplasm.
Source: NCBI Gene 7572 — RefSeq curated summary.
At a glance
- Clinical variants (ClinVar): 33 total
- MANE Select transcript:
NM_006965
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:13032 |
| Approved symbol | ZNF24 |
| Name | zinc finger protein 24 |
| Location | 18q12.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | ZSCAN3, Zfp191, KOX17 |
| Ensembl gene | ENSG00000172466 |
| Ensembl biotype | protein_coding |
| OMIM | 194534 |
| Entrez | 7572 |
Gene structure
Transcript identifiers
Ensembl transcripts: 16 — 16 protein_coding
ENST00000261332, ENST00000399061, ENST00000589539, ENST00000589881, ENST00000590140, ENST00000593130, ENST00000876552, ENST00000876553, ENST00000876554, ENST00000876555, ENST00000876556, ENST00000876557, ENST00000876558, ENST00000931765, ENST00000931766, ENST00000954189
RefSeq mRNA: 3 — MANE Select: NM_006965
NM_001308123, NM_001375815, NM_006965
CCDS: CCDS11912, CCDS77175
Canonical transcript exons
ENST00000261332 — 4 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000668338 | 35339829 | 35339976 |
| ENSE00001256469 | 35344360 | 35344420 |
| ENSE00001387215 | 35340231 | 35340733 |
| ENSE00002860589 | 35332227 | 35337770 |
Expression profiles
Bgee: expression breadth ubiquitous, 299 present calls, max score 97.45.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 29.7551 / max 473.6693, expressed in 1801 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 171644 | 29.7551 | 1801 |
Top tissues by expression
299 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| medial globus pallidus | UBERON:0002477 | 97.45 | gold quality |
| globus pallidus | UBERON:0001875 | 97.15 | gold quality |
| corpus callosum | UBERON:0002336 | 97.10 | gold quality |
| inferior vagus X ganglion | UBERON:0005363 | 96.85 | gold quality |
| olfactory bulb | UBERON:0002264 | 96.74 | silver quality |
| pylorus | UBERON:0001166 | 96.18 | gold quality |
| cardia of stomach | UBERON:0001162 | 95.82 | gold quality |
| nipple | UBERON:0002030 | 95.82 | gold quality |
| cranial nerve II | UBERON:0000941 | 95.58 | gold quality |
| subthalamic nucleus | UBERON:0001906 | 95.53 | gold quality |
| buccal mucosa cell | CL:0002336 | 95.36 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 95.09 | gold quality |
| lateral globus pallidus | UBERON:0002476 | 94.96 | gold quality |
| ventral tegmental area | UBERON:0002691 | 94.91 | gold quality |
| medulla oblongata | UBERON:0001896 | 94.90 | gold quality |
| calcaneal tendon | UBERON:0003701 | 94.76 | gold quality |
| dorsal motor nucleus of vagus nerve | UBERON:0002870 | 94.71 | gold quality |
| superior vestibular nucleus | UBERON:0007227 | 94.57 | gold quality |
| pericardium | UBERON:0002407 | 94.50 | gold quality |
| pons | UBERON:0000988 | 94.46 | gold quality |
| mammary duct | UBERON:0001765 | 94.44 | gold quality |
| ventricular zone | UBERON:0003053 | 94.35 | gold quality |
| superficial temporal artery | UBERON:0001614 | 94.20 | gold quality |
| dorsal plus ventral thalamus | UBERON:0001897 | 94.03 | gold quality |
| amniotic fluid | UBERON:0000173 | 93.93 | gold quality |
| substantia nigra pars reticulata | UBERON:0001966 | 93.88 | gold quality |
| epithelium of mammary gland | UBERON:0003244 | 93.88 | gold quality |
| vena cava | UBERON:0004087 | 93.74 | gold quality |
| ganglionic eminence | UBERON:0004023 | 93.62 | gold quality |
| superior surface of tongue | UBERON:0007371 | 93.62 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 11.64 |
| E-GEOD-99795 | no | 142.22 |
Regulation
Is transcription factor: yes
Downstream targets (CollecTRI)
5 targets.
| Target | Regulation |
|---|---|
| CCND1 | Activation |
| CTNNB1 | Activation |
| MSLN | Unknown |
| PDGFRB | Repression |
| VEGFA | Repression |
JASPAR motifs
| Motif | Name | Family |
|---|---|---|
| MA1124.1 | ZNF24 | More than 3 adjacent zinc fingers |
JASPAR matrix evidence (PMIDs): PMID:11532988
miRNA regulators (miRDB)
197 targeting ZNF24, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-6758-5P | 100.00 | 66.21 | 1470 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-6856-5P | 100.00 | 65.47 | 1298 |
| HSA-MIR-5193 | 100.00 | 67.26 | 1744 |
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-MIR-340-5P | 100.00 | 72.50 | 4437 |
| HSA-MIR-9-5P | 100.00 | 72.28 | 2361 |
| HSA-LET-7A-3P | 100.00 | 74.03 | 3932 |
| HSA-LET-7B-3P | 100.00 | 74.08 | 3913 |
| HSA-LET-7F-1-3P | 100.00 | 74.02 | 3928 |
| HSA-MIR-98-3P | 100.00 | 74.08 | 3907 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-4531 | 99.99 | 69.70 | 3181 |
| HSA-MIR-548AW | 99.99 | 72.57 | 3559 |
| HSA-MIR-4534 | 99.99 | 66.58 | 1907 |
| HSA-MIR-520D-5P | 99.98 | 73.34 | 4883 |
| HSA-MIR-524-5P | 99.98 | 73.43 | 4882 |
| HSA-MIR-5696 | 99.98 | 72.36 | 4487 |
| HSA-MIR-568 | 99.98 | 69.86 | 2084 |
| HSA-MIR-499A-5P | 99.98 | 70.79 | 1323 |
| HSA-MIR-548P | 99.98 | 72.25 | 3784 |
| HSA-MIR-3692-3P | 99.98 | 70.27 | 2139 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
| HSA-MIR-512-3P | 99.97 | 67.35 | 1049 |
| HSA-MIR-607 | 99.97 | 73.62 | 5593 |
| HSA-MIR-8075 | 99.97 | 67.20 | 962 |
| HSA-MIR-1468-3P | 99.96 | 72.74 | 3797 |
| HSA-MIR-548AJ-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-548X-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-590-3P | 99.96 | 74.34 | 6478 |
Literature-anchored findings (GeneRIF, showing 13)
- Overexpression and purification of single zinc finger peptides of ZNF191 were performed. (PMID:17270462)
- ZNF191 is a pleiotropic factor that has a role in hematopoiesis, brain development, and tumor growth. (PMID:19463170)
- Data confirm ZNF191 as an essential factor acting for the promotion of the cell cycle and thus maintenance in the progenitor stage. (PMID:19544452)
- These data suggest that ZNF24 is involved in negative regulation of PDGFR-beta and may represent a novel repressor of PDGFR-beta transcription. (PMID:20510677)
- ZNF191 can directly bind to the CTNNB1 promoter and activate the expression of beta-catenin and its downstream target genes such as cyclin D1 in hepatoma cell lines. (PMID:22213192)
- ZNF24 may be implicated in transcriptional regulation of genes associated with oncogenesis via interaction with H2A.Z. (PMID:22678762)
- ZNF24 represses VEGF transcription through direct binding to an 11-bp fragment of the VEGF proximal promoter and that it functions as a negative regulator of tumor growth by inhibiting angiogenesis. (PMID:23212515)
- results suggest that consecutive ZF1-2 is critical for the regulation of ZNF24 nuclear localization and its transactivation function. (PMID:24224020)
- In vivo, knockdown of ZNF24 specifically in microvascular endothelial cells led to significantly decreased formation of functional vascular networks. (PMID:25550468)
- miR-940 promoted gastric cancer progression by directly downregulating ZNF24 expression. (PMID:26317898)
- Wnt8B, transcriptionally regulated by ZNF191, promotes cell proliferation of hepatocellular carcinoma via Wnt signaling. (PMID:33197287)
- ZNF191 alters DNA methylation and activates the PI3K-AKT pathway in hepatoma cells via transcriptional regulation of DNMT1. (PMID:35092191)
- Tumor-suppressive zinc finger protein 24 (ZNF24) sensitizes colorectal cancer cells to 5-fluorouracil by inhibiting the Wnt pathway and activating the p53 signaling. (PMID:37774763)
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Zfp24 | ENSMUSG00000051469 |
| rattus_norvegicus | Zfp24 | ENSRNOG00000075202 |
Paralogs (30): ZNF263 (ENSG00000006194), ZNF213 (ENSG00000085644), ZNF500 (ENSG00000103199), ZKSCAN1 (ENSG00000106261), ZNF205 (ENSG00000122386), ZSCAN9 (ENSG00000137185), PGBD1 (ENSG00000137338), ZNF215 (ENSG00000149054), ZSCAN12 (ENSG00000158691), ZNF394 (ENSG00000160908), ZNF75A (ENSG00000162086), ZSCAN21 (ENSG00000166529), ZNF232 (ENSG00000167840), ZNF449 (ENSG00000173275), ZSCAN4 (ENSG00000180532), ZSCAN22 (ENSG00000182318), ZNF75D (ENSG00000186376), ZNF396 (ENSG00000186496), ZNF397 (ENSG00000186812), ZSCAN30 (ENSG00000186814), ZKSCAN4 (ENSG00000187626), ZSCAN23 (ENSG00000187987), ZKSCAN3 (ENSG00000189298), ZSCAN16 (ENSG00000196812), ZSCAN25 (ENSG00000197037), ZSCAN26 (ENSG00000197062), ZNF165 (ENSG00000197279), ZKSCAN8 (ENSG00000198315), ZSCAN31 (ENSG00000235109), ZNF853 (ENSG00000236609)
Protein
Protein identifiers
Zinc finger protein 24 — P17028 (reviewed: P17028)
Alternative names: Retinoic acid suppression protein A, Zinc finger and SCAN domain-containing protein 3, Zinc finger protein 191, Zinc finger protein KOX17
All UniProt accessions (4): P17028, K7EPL1, K7EPZ8, K7EQP8
UniProt curated annotations — full annotation on UniProt →
Function. Transcription factor required for myelination of differentiated oligodendrocytes. Required for the conversion of oligodendrocytes from the premyelinating to the myelinating state. In the developing central nervous system (CNS), involved in the maintenance in the progenitor stage by promoting the cell cycle. Specifically binds to the 5’-TCAT-3’ DNA sequence. Has transcription repressor activity in vitro.
Subcellular location. Nucleus.
Tissue specificity. Expressed in many tissues except in heart.
Post-translational modifications. Sumoylated.
Similarity. Belongs to the krueppel C2H2-type zinc-finger protein family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P17028-1 | 1 | yes |
| P17028-2 | 2 |
RefSeq proteins (3): NP_001295052, NP_001362744, NP_008896* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR003309 | SCAN_dom | Domain |
| IPR013087 | Znf_C2H2_type | Domain |
| IPR036236 | Znf_C2H2_sf | Homologous_superfamily |
| IPR038269 | SCAN_sf | Homologous_superfamily |
Pfam: PF00096, PF02023
UniProt features (45 total): cross-link 10, helix 9, modified residue 5, strand 5, zinc finger region 4, splice variant 2, sequence variant 2, mutagenesis site 2, turn 2, chain 1, domain 1, sequence conflict 1, region of interest 1
Structure
Experimental structures (PDB)
2 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 3LHR | X-RAY DIFFRACTION | 1.9 |
| 1X6E | SOLUTION NMR |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P17028-F1 | 66.50 | 0.21 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (15): 292, 335, 22, 27, 27, 147, 177, 236, 277, 286, 361, 367, 132, 142, 274
Mutagenesis-validated functional residues (2):
| Position | Phenotype |
|---|---|
| 286 | partial cytoplasmic accumulation. |
| 290 | partial cytoplasmic accumulation. |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 147 (showing top):
BROWNE_HCMV_INFECTION_6HR_DN, chr18q12, WANG_LMO4_TARGETS_DN, MILI_PSEUDOPODIA_HAPTOTAXIS_UP, BLALOCK_ALZHEIMERS_DISEASE_UP, GOBP_ENSHEATHMENT_OF_NEURONS, E4F1_Q6, DEBIASI_APOPTOSIS_BY_REOVIRUS_INFECTION_UP, NAKAMURA_TUMOR_ZONE_PERIPHERAL_VS_CENTRAL_DN, FISCHER_DREAM_TARGETS, NOUZOVA_TRETINOIN_AND_H4_ACETYLATION, ZHANG_BREAST_CANCER_PROGENITORS_UP, SPIELMAN_LYMPHOBLAST_EUROPEAN_VS_ASIAN_DN, CETS1P54_01, RYTGCNWTGGNR_UNKNOWN
GO Biological Process (4): regulation of transcription by RNA polymerase II (GO:0006357), myelination (GO:0042552), negative regulation of DNA-templated transcription (GO:0045892), positive regulation of transcription by RNA polymerase II (GO:0045944)
GO Molecular Function (10): RNA polymerase II cis-regulatory region sequence-specific DNA binding (GO:0000978), DNA-binding transcription factor activity, RNA polymerase II-specific (GO:0000981), DNA-binding transcription activator activity, RNA polymerase II-specific (GO:0001228), zinc ion binding (GO:0008270), identical protein binding (GO:0042802), sequence-specific DNA binding (GO:0043565), DNA binding (GO:0003677), DNA-binding transcription factor activity (GO:0003700), protein binding (GO:0005515), metal ion binding (GO:0046872)
GO Cellular Component (2): nucleus (GO:0005634), nucleoplasm (GO:0005654)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| regulation of DNA-templated transcription | 3 |
| RNA polymerase II transcription regulatory region sequence-specific DNA binding | 3 |
| transcription by RNA polymerase II | 2 |
| regulation of transcription by RNA polymerase II | 2 |
| axon ensheathment | 1 |
| DNA-templated transcription | 1 |
| negative regulation of RNA biosynthetic process | 1 |
| positive regulation of DNA-templated transcription | 1 |
| cis-regulatory region sequence-specific DNA binding | 1 |
| chromatin | 1 |
| DNA-binding transcription factor activity | 1 |
| DNA-binding transcription factor activity, RNA polymerase II-specific | 1 |
| DNA-binding transcription activator activity | 1 |
| positive regulation of transcription by RNA polymerase II | 1 |
| transition metal ion binding | 1 |
| protein binding | 1 |
| DNA binding | 1 |
| nucleic acid binding | 1 |
| transcription cis-regulatory region binding | 1 |
| transcription regulator activity | 1 |
| binding | 1 |
| cation binding | 1 |
| intracellular membrane-bounded organelle | 1 |
| nuclear lumen | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
1230 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ZNF24 | MAPRE2 | Q15555 | 775 |
| ZNF24 | CLOCK | O15516 | 595 |
| ZNF24 | RBFA | Q8N0V3 | 479 |
| ZNF24 | OLIG1 | Q8TAK6 | 458 |
| ZNF24 | HBP1 | O60381 | 446 |
| ZNF24 | MZF1 | P28698 | 438 |
| ZNF24 | TCF24 | Q7RTU0 | 436 |
| ZNF24 | ZNF202 | O95125 | 433 |
| ZNF24 | ZSCAN1 | Q8NBB4 | 432 |
| ZNF24 | SNX22 | Q96L94 | 431 |
| ZNF24 | ZPR1 | O75312 | 421 |
| ZNF24 | MYRF | Q9Y2G1 | 416 |
| ZNF24 | KCNH3 | Q9ULD8 | 412 |
| ZNF24 | CC2D1A | Q6P1N0 | 410 |
| ZNF24 | BBX | Q8WY36 | 409 |
IntAct
326 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| PGBD1 | ZNF24 | psi-mi:“MI:0915”(physical association) | 0.900 |
| ZNF24 | PGBD1 | psi-mi:“MI:0915”(physical association) | 0.900 |
| ZNF24 | ZSCAN32 | psi-mi:“MI:0915”(physical association) | 0.880 |
| ZSCAN32 | ZNF24 | psi-mi:“MI:0915”(physical association) | 0.880 |
| ZNF24 | ZKSCAN4 | psi-mi:“MI:0915”(physical association) | 0.880 |
| ZNF446 | ZNF24 | psi-mi:“MI:0915”(physical association) | 0.850 |
| ZNF24 | SCAND1 | psi-mi:“MI:0915”(physical association) | 0.850 |
| ZSCAN21 | ZNF24 | psi-mi:“MI:0915”(physical association) | 0.830 |
| ZNF24 | ZSCAN21 | psi-mi:“MI:0915”(physical association) | 0.830 |
| ZNF24 | ZNF446 | psi-mi:“MI:0915”(physical association) | 0.810 |
| ZNF446 | ZNF24 | psi-mi:“MI:0915”(physical association) | 0.810 |
BioGRID (238): ZNF24 (Two-hybrid), ZNF24 (Two-hybrid), ZSCAN21 (Two-hybrid), DZIP3 (Two-hybrid), FAM115A (Two-hybrid), MID2 (Two-hybrid), ZSCAN32 (Two-hybrid), ZNF446 (Two-hybrid), PGBD1 (Two-hybrid), ZNF483 (Two-hybrid), ZNF396 (Two-hybrid), ZNF24 (Affinity Capture-MS), ZNF24 (Biochemical Activity), ZNF446 (Affinity Capture-MS), SCAND1 (Affinity Capture-MS)
ESM2 similar proteins: A1YEP8, A1YEQ3, A1YEV9, A1YFW2, A1YFW6, A1YG26, A1YG48, A1YG60, A1YGJ4, A2T6V8, A2T6W2, A2T712, A2T736, A2T7D7, A2T7F4, A2T7L7, A6QNZ0, O15535, P10073, P17028, P17029, P49910, Q07231, Q15776, Q16670, Q1LZ87, Q3MJ62, Q4KLI1, Q53GI3, Q5R670, Q5R741, Q5RAE6, Q5RJ54, Q6P9G9, Q86W11, Q8BGS3, Q8CF60, Q8NF99, Q91VN1, Q91VW9
Diamond homologs: A1YEP8, A1YEQ3, A1YEV9, A1YFW2, A1YFW6, A1YG26, A1YG48, A1YG60, A1YGJ4, A1YGK6, A2T6E3, A2T6V8, A2T6W2, A2T712, A2T736, A2T7D2, A2T7D7, A2T7F2, A2T7F4, A2T7L7, A2T812, A6QNZ0, A6QPT6, B2KFW1, O14709, O14771, O14978, O15535, O43309, O60304, O95125, P10073, P17022, P17028, P17029, P17040, P28698, P49910, P51815, P59923
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
33 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 29 |
| Likely benign | 0 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
827 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 18:35339824:CTCA:C | donor_loss | 1.0000 |
| 18:35339826:CAC:C | donor_loss | 1.0000 |
| 18:35339828:C:A | donor_loss | 1.0000 |
| 18:35339828:CCA:C | donor_gain | 1.0000 |
| 18:35339853:C:CA | donor_gain | 1.0000 |
| 18:35339865:A:AC | donor_gain | 1.0000 |
| 18:35339866:C:CC | donor_gain | 1.0000 |
| 18:35339972:GAAAC:G | acceptor_gain | 1.0000 |
| 18:35339973:AAAC:A | acceptor_gain | 1.0000 |
| 18:35339974:AAC:A | acceptor_gain | 1.0000 |
| 18:35339975:AC:A | acceptor_gain | 1.0000 |
| 18:35339975:ACCTG:A | acceptor_loss | 1.0000 |
| 18:35339976:CC:C | acceptor_gain | 1.0000 |
| 18:35339977:C:CC | acceptor_gain | 1.0000 |
| 18:35339978:T:G | acceptor_loss | 1.0000 |
| 18:35344349:T:A | donor_gain | 1.0000 |
| 18:35344371:T:TA | donor_gain | 1.0000 |
| 18:35337768:CAT:C | acceptor_gain | 0.9900 |
| 18:35337771:C:CC | acceptor_gain | 0.9900 |
| 18:35339827:A:AC | donor_gain | 0.9900 |
| 18:35339828:C:CC | donor_gain | 0.9900 |
| 18:35339952:C:A | donor_gain | 0.9900 |
| 18:35339984:C:CT | acceptor_gain | 0.9900 |
| 18:35339985:A:T | acceptor_gain | 0.9900 |
| 18:35340225:GCTCA:G | donor_loss | 0.9900 |
| 18:35340226:CTCAC:C | donor_loss | 0.9900 |
| 18:35340227:TCACC:T | donor_loss | 0.9900 |
| 18:35340228:CACCG:C | donor_loss | 0.9900 |
| 18:35340229:A:AC | donor_gain | 0.9900 |
| 18:35340229:A:C | donor_loss | 0.9900 |
AlphaMissense
2410 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 18:35337391:A:C | F316L | 0.999 |
| 18:35337391:A:T | F316L | 0.999 |
| 18:35337393:A:G | F316L | 0.999 |
| 18:35337475:G:C | F288L | 0.999 |
| 18:35337475:G:T | F288L | 0.999 |
| 18:35337477:A:G | F288L | 0.999 |
| 18:35337364:A:C | H325Q | 0.997 |
| 18:35337364:A:T | H325Q | 0.997 |
| 18:35337366:G:C | H325D | 0.997 |
| 18:35337559:G:C | F260L | 0.997 |
| 18:35337559:G:T | F260L | 0.997 |
| 18:35337561:A:G | F260L | 0.997 |
| 18:35337374:A:G | L322P | 0.996 |
| 18:35337392:A:G | F316S | 0.996 |
| 18:35337448:G:C | H297Q | 0.996 |
| 18:35337448:G:T | H297Q | 0.996 |
| 18:35337450:G:C | H297D | 0.996 |
| 18:35337476:A:G | F288S | 0.996 |
| 18:35337352:A:C | H329Q | 0.995 |
| 18:35337352:A:T | H329Q | 0.995 |
| 18:35337362:T:G | Q326P | 0.995 |
| 18:35337366:G:T | H325N | 0.995 |
| 18:35337446:T:G | Q298P | 0.995 |
| 18:35340433:A:G | L73P | 0.995 |
| 18:35337436:G:C | H301Q | 0.994 |
| 18:35337436:G:T | H301Q | 0.994 |
| 18:35337458:A:G | L294P | 0.994 |
| 18:35337534:G:C | H269D | 0.994 |
| 18:35337414:A:G | C309R | 0.993 |
| 18:35337420:A:C | Y307D | 0.993 |
dbSNP variants (sampled 300 via entrez): RS1000058747 (18:35342547 T>C), RS1000654799 (18:35333692 G>A,T), RS1000661020 (18:35343735 A>G), RS1000948362 (18:35343473 G>A), RS1001008754 (18:35343986 G>A), RS1001599139 (18:35344080 T>A), RS1001650216 (18:35343813 G>T), RS1001929786 (18:35345136 A>G), RS1001983969 (18:35344784 T>C), RS1002062080 (18:35344621 G>T), RS1002236590 (18:35332332 T>C), RS1002594003 (18:35342721 C>T), RS1002646435 (18:35342507 G>T), RS1002661315 (18:35346144 T>G), RS1002852347 (18:35338854 T>C,G)
Disease associations
OMIM: gene MIM:194534 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
0 associations (top):
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
44 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects expression, decreases expression | 5 |
| sodium arsenite | decreases expression, affects cotreatment, increases abundance, increases expression | 4 |
| Air Pollutants | affects cotreatment, increases abundance, increases oxidation, affects expression, decreases expression | 3 |
| Ozone | affects cotreatment, increases oxidation, increases abundance, affects expression | 2 |
| 7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide | decreases expression, increases expression | 2 |
| 3-((6-(2-methoxyphenyl)pyrimidin-4-yl)amino)phenyl)methane sulfonamide | decreases expression | 1 |
| FR900359 | increases phosphorylation | 1 |
| TAK-243 | increases sumoylation | 1 |
| dicrotophos | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| alpha-pinene | affects cotreatment, increases oxidation, increases abundance | 1 |
| methylselenic acid | decreases expression | 1 |
| trichostatin A | affects expression | 1 |
| beta-lapachone | increases expression | 1 |
| manganese chloride | increases abundance, increases expression, affects cotreatment | 1 |
| methacrylaldehyde | affects cotreatment, increases oxidation, increases abundance | 1 |
| pentabromodiphenyl ether | increases expression | 1 |
| abrine | increases expression | 1 |
| 2,2’,4,4’-tetrabromodiphenyl ether | increases expression | 1 |
| jinfukang | decreases expression | 1 |
| PCI 5002 | affects cotreatment, increases expression | 1 |
| Sunitinib | decreases expression | 1 |
| Acetaminophen | affects response to substance | 1 |
| Acrolein | affects cotreatment, increases oxidation, increases abundance | 1 |
| Arsenic | affects cotreatment, increases abundance, increases expression | 1 |
| Benzo(a)pyrene | affects methylation | 1 |
| Cadmium | increases abundance, increases expression | 1 |
| Caffeine | increases phosphorylation | 1 |
| Coal | decreases expression, increases abundance | 1 |
| Doxorubicin | decreases expression | 1 |
Cellosaurus cell lines
2 cell lines: 1 cancer cell line, 1 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_AW47 | K562 eGFP-ZNF24 | Cancer cell line | Female |
| CVCL_HD16 | HEK293 eGFP-ZNF24 | Transformed cell line | Female |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.