ZNF473CR

Summary

ZNF473CR (ZNF473 cis regulating lncRNA, HGNC:56021) is a long non-coding RNA gene on chromosome 19q13.33.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56021
Approved symbol	ZNF473CR
Name	ZNF473 cis regulating lncRNA
Location	19q13.33
Locus type	RNA, long non-coding
Status	Approved
Aliases	FLJ26850
Ensembl gene	ENSG00000204666
Ensembl biotype	lncRNA
Entrez	400710
RNAcentral	URS0000A7721A — lncRNA, 1542 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000527209, ENST00000779692, ENST00000779693, ENST00000779694

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000527209 — 3 exons

Exon	Start	End
ENSE00001472436	50066075	50066793
ENSE00001472438	50061800	50061999
ENSE00002222380	50050589	50051194

Expression profiles

Bgee: expression breadth ubiquitous, 142 present calls, max score 82.21.

Top tissues by expression

233 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	82.21	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	78.49	gold quality
bronchial epithelial cell	CL:0002328	75.88	gold quality
right uterine tube	UBERON:0001302	74.95	gold quality
bronchus	UBERON:0002185	74.29	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	68.72	gold quality
cortical plate	UBERON:0005343	61.34	gold quality
ventricular zone	UBERON:0003053	60.42	gold quality
nucleus accumbens	UBERON:0001882	60.12	gold quality
ganglionic eminence	UBERON:0004023	60.12	gold quality
buccal mucosa cell	CL:0002336	58.64	silver quality
caudate nucleus	UBERON:0001873	56.62	gold quality
prostate gland	UBERON:0002367	56.61	gold quality
oviduct epithelium	UBERON:0004804	56.47	silver quality
fallopian tube	UBERON:0003889	56.20	gold quality
putamen	UBERON:0001874	54.95	gold quality
hypothalamus	UBERON:0001898	54.42	gold quality
nasal cavity mucosa	UBERON:0001826	54.17	gold quality
hindlimb stylopod muscle	UBERON:0004252	53.31	gold quality
Brodmann (1909) area 9	UBERON:0013540	53.04	gold quality
prefrontal cortex	UBERON:0000451	52.92	gold quality
mucosa of paranasal sinus	UBERON:0005030	52.82	silver quality
C1 segment of cervical spinal cord	UBERON:0006469	52.39	gold quality
islet of Langerhans	UBERON:0000006	52.06	gold quality
mucosa of stomach	UBERON:0001199	51.92	gold quality
adenohypophysis	UBERON:0002196	51.88	gold quality
amygdala	UBERON:0001876	51.41	gold quality
right frontal lobe	UBERON:0002810	51.30	gold quality
spinal cord	UBERON:0002240	51.25	gold quality
anterior cingulate cortex	UBERON:0009835	51.07	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.94

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.