ZNF526
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Also known as KIAA1951MGC4267
Summary
ZNF526 (zinc finger protein 526, HGNC:29415) is a protein-coding gene on chromosome 19q13.2, encoding Zinc finger protein 526 (Q8TF50). Probable transcription factor.
Predicted to enable DNA binding activity and zinc ion binding activity. Predicted to be located in nucleus.
Source: NCBI Gene 116115 — RefSeq curated summary.
At a glance
- Gene–disease (curated): Dentici-Novelli neurodevelopmental syndrome (Strong, GenCC)
- GWAS associations: 2
- Clinical variants (ClinVar): 152 total — 4 pathogenic, 1 likely-pathogenic
- Phenotypes (HPO): 29
- MANE Select transcript:
NM_133444
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:29415 |
| Approved symbol | ZNF526 |
| Name | zinc finger protein 526 |
| Location | 19q13.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | KIAA1951, MGC4267 |
| Ensembl gene | ENSG00000167625 |
| Ensembl biotype | protein_coding |
| OMIM | 614387 |
| Entrez | 116115 |
Gene structure
Transcript identifiers
Ensembl transcripts: 8 — 8 protein_coding
ENST00000301215, ENST00000597945, ENST00000710326, ENST00000907471, ENST00000907472, ENST00000907473, ENST00000907474, ENST00000939477
RefSeq mRNA: 2 — MANE Select: NM_133444
NM_001314033, NM_133444
CCDS: CCDS12598
Canonical transcript exons
ENST00000301215 — 3 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001427408 | 42224387 | 42228201 |
| ENSE00001428957 | 42224215 | 42224305 |
| ENSE00004011474 | 42220312 | 42220387 |
Expression profiles
Bgee: expression breadth ubiquitous, 177 present calls, max score 85.37.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 7.5723 / max 44.3196, expressed in 1747 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 176128 | 7.5723 | 1747 |
Top tissues by expression
246 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 85.37 | gold quality |
| ileal mucosa | UBERON:0000331 | 80.17 | silver quality |
| stromal cell of endometrium | CL:0002255 | 79.39 | gold quality |
| pancreatic ductal cell | CL:0002079 | 79.11 | silver quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 78.24 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 75.71 | gold quality |
| granulocyte | CL:0000094 | 75.55 | gold quality |
| bone marrow cell | CL:0002092 | 75.38 | gold quality |
| gastrocnemius | UBERON:0001388 | 74.78 | gold quality |
| muscle of leg | UBERON:0001383 | 74.77 | gold quality |
| cortical plate | UBERON:0005343 | 74.51 | gold quality |
| ventricular zone | UBERON:0003053 | 74.49 | gold quality |
| ganglionic eminence | UBERON:0004023 | 74.43 | gold quality |
| islet of Langerhans | UBERON:0000006 | 73.23 | gold quality |
| tibialis anterior | UBERON:0001385 | 73.05 | silver quality |
| leukocyte | CL:0000738 | 72.96 | gold quality |
| monocyte | CL:0000576 | 72.54 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 72.01 | gold quality |
| popliteal artery | UBERON:0002250 | 71.91 | gold quality |
| tibial artery | UBERON:0007610 | 71.88 | gold quality |
| right coronary artery | UBERON:0001625 | 71.84 | gold quality |
| body of uterus | UBERON:0009853 | 71.54 | gold quality |
| sural nerve | UBERON:0015488 | 71.42 | gold quality |
| skin of leg | UBERON:0001511 | 71.39 | gold quality |
| aorta | UBERON:0000947 | 71.37 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 71.35 | gold quality |
| skeletal muscle organ | UBERON:0014892 | 71.24 | gold quality |
| thoracic aorta | UBERON:0001515 | 71.08 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 71.08 | gold quality |
| lower esophagus | UBERON:0013473 | 71.05 | gold quality |
Single-cell (SCXA)
Detected in 7 experiment(s), a significant marker in 5.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-8142 | yes | 104.07 |
| E-CURD-88 | yes | 47.55 |
| E-MTAB-6701 | yes | 30.57 |
| E-HCAD-9 | yes | 16.54 |
| E-HCAD-10 | yes | 4.13 |
| E-ANND-3 | no | 3.66 |
| E-GEOD-137537 | no | 3.34 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
26 targeting ZNF526, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4692 | 100.00 | 67.32 | 2066 |
| HSA-MIR-4514 | 99.99 | 67.10 | 1870 |
| HSA-MIR-3919 | 99.87 | 69.45 | 2489 |
| HSA-MIR-221-5P | 99.86 | 65.45 | 1052 |
| HSA-MIR-8073 | 99.86 | 65.21 | 1118 |
| HSA-MIR-202-3P | 99.84 | 71.41 | 1290 |
| HSA-MIR-3202 | 99.66 | 67.70 | 2737 |
| HSA-MIR-143-3P | 99.49 | 69.05 | 1457 |
| HSA-MIR-4770 | 99.49 | 69.09 | 1451 |
| HSA-MIR-5683 | 99.36 | 68.59 | 2083 |
| HSA-MIR-2467-3P | 98.65 | 67.18 | 1969 |
| HSA-MIR-4700-5P | 98.63 | 67.43 | 1915 |
| HSA-MIR-6826-3P | 98.19 | 66.32 | 1153 |
| HSA-MIR-6742-3P | 97.95 | 64.50 | 1490 |
| HSA-MIR-7113-5P | 97.88 | 67.33 | 1735 |
| HSA-MIR-3661 | 97.83 | 67.30 | 705 |
| HSA-MIR-8089 | 97.74 | 66.21 | 1698 |
| HSA-MIR-4667-5P | 97.61 | 66.67 | 1683 |
| HSA-MIR-6791-3P | 97.45 | 64.31 | 1123 |
| HSA-MIR-6829-3P | 97.45 | 64.31 | 1137 |
| HSA-MIR-194-3P | 97.36 | 65.96 | 1027 |
| HSA-MIR-3116 | 97.07 | 65.78 | 1324 |
| HSA-MIR-631 | 97.05 | 66.93 | 602 |
| HSA-MIR-3907 | 96.76 | 65.04 | 662 |
| HSA-MIR-500B-3P | 96.49 | 65.40 | 1087 |
| HSA-MIR-6760-3P | 96.35 | 68.31 | 1001 |
Literature-anchored findings (GeneRIF, showing 1)
- Biallelic variants in ZNF526 cause a severe neurodevelopmental disorder with microcephaly, bilateral cataract, epilepsy and simplified gyration. (PMID:33397746)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | znf526 | ENSDARG00000077143 |
| mus_musculus | Zfp526 | ENSMUSG00000046541 |
| rattus_norvegicus | Zfp526 | ENSRNOG00000047526 |
Paralogs (36): ZNF302 (ENSG00000089335), ZNF184 (ENSG00000096654), CTCF (ENSG00000102974), ZNF574 (ENSG00000105732), ZBTB24 (ENSG00000112365), ZNF142 (ENSG00000115568), CTCFL (ENSG00000124092), ZNF473 (ENSG00000142528), ZNF827 (ENSG00000151612), ZNF689 (ENSG00000156853), ZNF208 (ENSG00000160321), ZNF91 (ENSG00000167232), ZNF764 (ENSG00000169951), ZNF747 (ENSG00000169955), ZNF282 (ENSG00000170265), ZNF160 (ENSG00000170949), ZNF497 (ENSG00000174586), ZBTB34 (ENSG00000177125), ZNF771 (ENSG00000179965), ZNF48 (ENSG00000180035), ZNF594 (ENSG00000180626), ZBTB37 (ENSG00000185278), ZFP92 (ENSG00000189420), ZNF107 (ENSG00000196247), ZNF729 (ENSG00000196350), ZNF569 (ENSG00000196437), ZNF420 (ENSG00000197050), ZNF785 (ENSG00000197162), ZNF665 (ENSG00000197497), ZNF181 (ENSG00000197841), ZNF347 (ENSG00000197937), ZNF84 (ENSG00000198040), ZBTB48 (ENSG00000204859), ZNF845 (ENSG00000213799), ZNF99 (ENSG00000213973), ZNF688 (ENSG00000229809)
Protein
Protein identifiers
Zinc finger protein 526 — Q8TF50 (reviewed: Q8TF50)
All UniProt accessions (3): Q8TF50, H9ZYJ3, M0R395
UniProt curated annotations — full annotation on UniProt →
Function. Probable transcription factor.
Subunit / interactions. Interacts with Zincore complex components QRICH1 and SEPHS1; probably stabilizing ZNF526 at DNA-binding sites across the genome.
Subcellular location. Nucleus.
Tissue specificity. Widely expressed.
Disease relevance. Dentici-Novelli neurodevelopmental syndrome (DENNED) [MIM:619877] An autosomal recessive disorder characterized by global developmental delay and impaired intellectual development apparent from infancy. Disease severity is variable. More severely affected individuals have profound intellectual disability, axial hypotonia, peripheral spasticity, prenatal and postnatal microcephaly, early-onset seizures, brain imaging abnormalities, and are unable to walk or speak. Patients with a less severe phenotype may achieve some developmental goals and show less severe intellectual disability. The disease is caused by variants affecting the gene represented in this entry.
Similarity. Belongs to the krueppel C2H2-type zinc-finger protein family.
RefSeq proteins (2): NP_001300962, NP_597701* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR013087 | Znf_C2H2_type | Domain |
| IPR036236 | Znf_C2H2_sf | Homologous_superfamily |
Pfam: PF00096, PF13894, PF13912
UniProt features (27 total): zinc finger region 13, compositionally biased region 5, region of interest 4, sequence variant 4, chain 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q8TF50-F1 | 63.80 | 0.00 |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 102 (showing top):
KOYAMA_SEMA3B_TARGETS_UP, ZWANG_DOWN_BY_2ND_EGF_PULSE, ASH1L_TARGET_GENES, DIDO1_TARGET_GENES, FEV_TARGET_GENES, SALL4_TARGET_GENES, SNAI1_TARGET_GENES, ZNF610_TARGET_GENES, MIR4692, MIR4514, MIR3907, HP_WIDE_MOUTH, HP_ABNORMAL_LIP_MORPHOLOGY, HP_ABNORMALITY_OF_THE_DENTITION, HP_ABNORMAL_UPPER_LIP_MORPHOLOGY
GO Biological Process (0):
GO Molecular Function (4): DNA binding (GO:0003677), zinc ion binding (GO:0008270), protein binding (GO:0005515), metal ion binding (GO:0046872)
GO Cellular Component (1): nucleus (GO:0005634)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| nucleic acid binding | 1 |
| transition metal ion binding | 1 |
| binding | 1 |
| cation binding | 1 |
| intracellular membrane-bounded organelle | 1 |
Protein interactions and networks
STRING
806 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ZNF526 | C21orf58 | P58505 | 543 |
| ZNF526 | ZC3H14 | Q6PJT7 | 475 |
| ZNF526 | ARL14EP | Q8N8R7 | 444 |
| ZNF526 | CNFN | Q9BYD5 | 440 |
| ZNF526 | PRR19 | A6NJB7 | 412 |
| ZNF526 | MEGF8 | Q7Z7M0 | 408 |
| ZNF526 | DEDD2 | Q8WXF8 | 401 |
| ZNF526 | TMEM145 | Q8NBT3 | 397 |
| ZNF526 | PAFAH1B3 | Q15102 | 396 |
| ZNF526 | ZFAND3 | Q9H8U3 | 392 |
| ZNF526 | ST3GAL3 | Q11203 | 371 |
| ZNF526 | DDX51 | Q8N8A6 | 360 |
| ZNF526 | GTF2F1 | P35269 | 358 |
| ZNF526 | CEACAM7 | Q14002 | 353 |
| ZNF526 | PSG1 | P11462 | 352 |
IntAct
176 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| THAP12 | ZNF526 | psi-mi:“MI:0915”(physical association) | 0.670 |
| RPL14 | RRP8 | psi-mi:“MI:0914”(association) | 0.640 |
| LMO3 | ZNF526 | psi-mi:“MI:0915”(physical association) | 0.560 |
| HNRNPK | ZNF526 | psi-mi:“MI:0915”(physical association) | 0.560 |
| PRKAB2 | ZNF526 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ZNF438 | ZNF526 | psi-mi:“MI:0915”(physical association) | 0.560 |
| FARS2 | ZNF526 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ZNF526 | NME7 | psi-mi:“MI:0915”(physical association) | 0.560 |
| PADI6 | ZNF526 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ZNF497 | ZNF526 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ZNF526 | INO80B | psi-mi:“MI:0915”(physical association) | 0.560 |
| ZNF526 | PBK | psi-mi:“MI:0915”(physical association) | 0.560 |
| ZFP91 | ZNF526 | psi-mi:“MI:0915”(physical association) | 0.560 |
| LMO1 | ZNF526 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ZNF526 | YJU2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ZNF526 | ZNF696 | psi-mi:“MI:0915”(physical association) | 0.560 |
| IQUB | ZNF526 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ZNF575 | ZNF526 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ZNF526 | ZNF835 | psi-mi:“MI:0915”(physical association) | 0.560 |
| U2AF2 | ZNF526 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ZNF526 | SCNM1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ZNF526 | TRIM41 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ZNF526 | ZNF524 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ZNF526 | ZNF578 | psi-mi:“MI:0915”(physical association) | 0.560 |
| IL16 | ZNF526 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ZNF264 | ZNF526 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ZNF526 | GPATCH2L | psi-mi:“MI:0915”(physical association) | 0.560 |
| RBM10 | ZNF526 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ZNF526 | PRPF18 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SEPHS1 | ZNF526 | psi-mi:“MI:0915”(physical association) | 0.560 |
BioGRID (81): CDC27 (Affinity Capture-MS), CRYZ (Affinity Capture-MS), AFF1 (Affinity Capture-MS), P4HA1 (Affinity Capture-MS), STX3 (Affinity Capture-MS), TMSB4X (Affinity Capture-MS), MLLT10 (Affinity Capture-MS), BRAP (Affinity Capture-MS), VAMP4 (Affinity Capture-MS), PSME3 (Affinity Capture-MS), SLC12A9 (Affinity Capture-MS), NLN (Affinity Capture-MS), ZNF574 (Affinity Capture-MS), PANK2 (Affinity Capture-MS), PCGF6 (Affinity Capture-MS)
ESM2 similar proteins: A2A5K6, A6QR00, D4A8X0, E9Q6W4, G3V893, O15015, O15156, O95863, P0CJ78, P10074, Q02085, Q13105, Q29RK0, Q3U3I9, Q4R8S8, Q504L7, Q5EBL2, Q5F293, Q5R4P8, Q5RJR4, Q60821, Q66K89, Q6DD87, Q6GL52, Q6NV66, Q6PGE4, Q6YND2, Q6ZN55, Q80VM4, Q8BI66, Q8BI69, Q8BIF9, Q8BY46, Q8CCE9, Q8CJ78, Q8JZL0, Q8N1W2, Q8NCA9, Q8TF50, Q8WUU4
Diamond homologs: A0A5K4F1D0, A0JC51, A4FV57, O57311, O60315, O60481, O73689, O95409, P08151, P10070, P10071, P19538, P25490, P34708, P36197, P39768, P46684, P47806, P55878, P55879, Q00899, Q0VGT2, Q15915, Q17308, Q5IS56, Q60542, Q61467, Q61602, Q62520, Q62521, Q62947, Q64318, Q6DJQ6, Q6GR30, Q6XP49, Q6ZN18, Q7JNM3, Q7K0S9, Q7SXV2, Q7TQ40
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 69 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| mRNA Splicing - Major Pathway | 6 | 8.4× | 8e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
152 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 4 |
| Likely pathogenic | 1 |
| Uncertain significance | 123 |
| Likely benign | 10 |
| Benign | 7 |
Top pathogenic / likely-pathogenic (5)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1457848 | NC_000019.9:g.(?42703590)(42778729_?)del | Pathogenic |
| 1687023 | NM_133444.3(ZNF526):c.1512_1513del (p.Cys505fs) | Pathogenic |
| 1687024 | NM_133444.3(ZNF526):c.907_908insT (p.His303fs) | Pathogenic |
| 1687026 | NM_133444.3(ZNF526):c.1227C>G (p.His409Gln) | Pathogenic |
| 183288 | NM_133444.3(ZNF526):c.479A>C (p.Lys160Thr) | Likely pathogenic |
SpliceAI
664 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 19:42217011:C:T | acceptor_gain | 0.9900 |
| 19:42217012:G:T | acceptor_gain | 0.9900 |
| 19:42219914:A:AC | donor_gain | 0.9900 |
| 19:42219915:C:CC | donor_gain | 0.9900 |
| 19:42219986:T:A | donor_gain | 0.9900 |
| 19:42220372:GAGA:G | donor_gain | 0.9900 |
| 19:42224213:A:AG | acceptor_gain | 0.9900 |
| 19:42224214:G:GG | acceptor_gain | 0.9900 |
| 19:42224302:GCTG:G | donor_gain | 0.9900 |
| 19:42224304:TGGT:T | donor_loss | 0.9900 |
| 19:42224306:G:GG | donor_gain | 0.9900 |
| 19:42224306:GTGA:G | donor_loss | 0.9900 |
| 19:42224307:T:A | donor_loss | 0.9900 |
| 19:42224308:GAGTA:G | donor_loss | 0.9900 |
| 19:42224383:CCA:C | acceptor_loss | 0.9900 |
| 19:42224384:CAGGC:C | acceptor_loss | 0.9900 |
| 19:42224385:A:AG | acceptor_gain | 0.9900 |
| 19:42224385:A:T | acceptor_loss | 0.9900 |
| 19:42224386:G:GG | acceptor_gain | 0.9900 |
| 19:42224386:GGC:G | acceptor_gain | 0.9900 |
| 19:42224386:GGCA:G | acceptor_gain | 0.9900 |
| 19:42217011:C:CT | acceptor_gain | 0.9800 |
| 19:42217054:C:T | acceptor_gain | 0.9800 |
| 19:42219956:C:CA | donor_gain | 0.9800 |
| 19:42220375:A:G | donor_gain | 0.9800 |
| 19:42224210:TGCA:T | acceptor_loss | 0.9800 |
| 19:42224211:GCAG:G | acceptor_loss | 0.9800 |
| 19:42224214:G:A | acceptor_loss | 0.9800 |
| 19:42224214:GGCT:G | acceptor_gain | 0.9800 |
| 19:42224385:AG:A | acceptor_gain | 0.9800 |
AlphaMissense
4346 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 19:42225589:T:C | F396L | 1.000 |
| 19:42225591:C:A | F396L | 1.000 |
| 19:42225591:C:G | F396L | 1.000 |
| 19:42225608:T:C | F402S | 1.000 |
| 19:42225907:T:C | C502R | 1.000 |
| 19:42225928:T:C | F509L | 1.000 |
| 19:42225930:T:A | F509L | 1.000 |
| 19:42225930:T:G | F509L | 1.000 |
| 19:42225955:C:G | H518D | 1.000 |
| 19:42226012:T:C | F537L | 1.000 |
| 19:42226013:T:C | F537S | 1.000 |
| 19:42226014:C:A | F537L | 1.000 |
| 19:42226014:C:G | F537L | 1.000 |
| 19:42224998:T:A | C199S | 0.999 |
| 19:42224998:T:C | C199R | 0.999 |
| 19:42224999:G:C | C199S | 0.999 |
| 19:42225038:T:C | F212S | 0.999 |
| 19:42225343:T:C | F314L | 0.999 |
| 19:42225345:C:A | F314L | 0.999 |
| 19:42225345:C:G | F314L | 0.999 |
| 19:42225403:T:C | C334R | 0.999 |
| 19:42225412:T:C | C337R | 0.999 |
| 19:42225414:C:G | C337W | 0.999 |
| 19:42225487:T:C | C362R | 0.999 |
| 19:42225508:T:C | F369L | 0.999 |
| 19:42225510:T:A | F369L | 0.999 |
| 19:42225510:T:G | F369L | 0.999 |
| 19:42225571:T:C | C390R | 0.999 |
| 19:42225577:T:A | C392S | 0.999 |
| 19:42225577:T:C | C392R | 0.999 |
dbSNP variants (sampled 300 via entrez): RS1000596705 (19:42218776 T>C), RS1000814416 (19:42219062 T>C), RS1001335723 (19:42220236 C>T), RS1001714981 (19:42220468 A>G), RS1001864200 (19:42220193 T>A,C), RS1001874344 (19:42219897 G>A), RS1002433207 (19:42227501 G>A), RS1002579218 (19:42223260 G>A), RS1002894989 (19:42220399 G>A,T), RS1003581539 (19:42221212 T>A), RS1003613078 (19:42221960 G>A), RS1004259159 (19:42228446 A>C,G), RS1004781872 (19:42221158 G>A,C), RS1005133620 (19:42222748 T>G), RS1005164733 (19:42222290 A>C)
Disease associations
OMIM: gene MIM:614387 | disease phenotypes: MIM:619877, MIM:123100, MIM:265500
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| Dentici-Novelli neurodevelopmental syndrome | Strong | Autosomal recessive |
Mondo (4): Dentici-Novelli neurodevelopmental syndrome (MONDO:0859251), TWIST1-related craniosynostosis (MONDO:0007399), intellectual disability (MONDO:0001071), pulmonic stenosis (MONDO:0009938)
Orphanet (3): OBSOLETE: Isolated oxycephaly (Orphanet:63440), Congenital pulmonary valvar stenosis (Orphanet:3189), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658)
HPO phenotypes
29 total (30 of 29 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000154 | Wide mouth |
| HP:0000219 | Thin upper lip vermilion |
| HP:0000252 | Microcephaly |
| HP:0000307 | Pointed chin |
| HP:0000316 | Hypertelorism |
| HP:0000340 | Sloping forehead |
| HP:0000365 | Hearing impairment |
| HP:0000400 | Macrotia |
| HP:0000426 | Prominent nasal bridge |
| HP:0000518 | Cataract |
| HP:0000582 | Upslanted palpebral fissure |
| HP:0000687 | Widely spaced teeth |
| HP:0000733 | Motor stereotypy |
| HP:0000826 | Precocious puberty |
| HP:0001276 | Hypertonia |
| HP:0002069 | Bilateral tonic-clonic seizure |
| HP:0002188 | Delayed CNS myelination |
| HP:0002421 | Poor head control |
| HP:0002521 | Hypsarrhythmia |
| HP:0002540 | Inability to walk |
| HP:0003593 | Infantile onset |
| HP:0008936 | Axial hypotonia |
| HP:0009879 | Simplified gyral pattern |
| HP:0011097 | Epileptic spasm |
| HP:0011461 | Fetal onset |
| HP:0012736 | Profound global developmental delay |
| HP:0032794 | Myoclonic seizure |
| HP:0033725 | Thin corpus callosum |
| HP:0001642 | Pulmonic stenosis |
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST010143_27 | Meat-related diet | 3.000000e-09 |
| GCST012335_5 | Hodgkin’s lymphoma | 3.000000e-12 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0008111 | diet measurement |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
21 total (human), top 21 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| 3-((6-(2-methoxyphenyl)pyrimidin-4-yl)amino)phenyl)methane sulfonamide | decreases expression | 1 |
| TAK-243 | increases sumoylation | 1 |
| dicrotophos | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| 2-palmitoylglycerol | increases expression | 1 |
| 4-(4-((5-(4,5-dimethyl-2-nitrophenyl)-2-furanyl)methylene)-4,5-dihydro-3-methyl-5-oxo-1H-pyrazol-1-yl)benzoic acid | increases expression | 1 |
| Temozolomide | decreases expression | 1 |
| Sunitinib | increases expression | 1 |
| Air Pollutants | affects expression, increases abundance | 1 |
| Benzo(a)pyrene | increases expression | 1 |
| Diazinon | increases methylation | 1 |
| Doxorubicin | decreases expression | 1 |
| Formaldehyde | decreases expression | 1 |
| Ozone | affects expression, increases abundance | 1 |
| Smoke | decreases expression | 1 |
| Tobacco Smoke Pollution | increases expression | 1 |
| Urethane | decreases expression | 1 |
| Valproic Acid | increases methylation | 1 |
| Particulate Matter | decreases expression | 1 |
Clinical trials (associated diseases)
210 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT05474924 | PHASE4 | UNKNOWN | The Role of Budesonide Intrapolyp Injection in CRSwNP |
| NCT05657860 | PHASE4 | COMPLETED | Guanfacine Extended Release for the Reduction of Aggression and Self-injurious Behavior Associated With Prader-Willi Syndrome |
| NCT05744479 | PHASE4 | RECRUITING | Metformin for Antipsychotic-induced Weight Gain in Adults With Intellectual Disability |
| NCT06107829 | PHASE4 | WITHDRAWN | Valbenazine Treatment of Tardive Dyskinesia in Adults With Intellectual/Developmental Disabilities |
| NCT06997198 | PHASE4 | NOT_YET_RECRUITING | Deutetrabenazine Treatment for Tardive Dyskinesia in Intellectual/Developmental Disabilities |
| NCT02270736 | PHASE3 | COMPLETED | Clinical Study to Investigate the Efficacy and Safety of NT 201 Compared to Placebo in the Treatment of Chronic Troublesome Drooling Associated With Neurological Disorders and/or Intellectual Disability |
| NCT02304302 | PHASE2 | COMPLETED | Down Syndrome Memantine Follow-up Study |
| NCT03862950 | PHASE2 | COMPLETED | A Trial of Metformin in Individuals With Fragile X Syndrome (Met) |
| NCT04529226 | PHASE2 | UNKNOWN | Study to Compare Clozapine vs Treatment as Usual in People With Intellectual Disability & Treatment-resistant Psychosis |
| NCT04821856 | PHASE2 | COMPLETED | Evaluation of the Effectiveness of Cannabidiol in Treating Severe Behavioural Problems in Children and Adolescents With Intellectual Disability |
| NCT05273320 | PHASE1 | COMPLETED | Clinical Trial of Nabilone for Aggression in Adults With Intellectual and Developmental Disabilities |
| NCT05301361 | PHASE1 | ENROLLING_BY_INVITATION | Sensitivity of the NIH Toolbox to Stimulant Treatment in Intellectual Disabilities |
| NCT06016764 | PHASE1 | COMPLETED | Use of MRI and cTBS for Catatonia in Autism |
| NCT06586827 | PHASE1 | COMPLETED | Impact of Competency-Based Training and Technical Assistance Employment Outcomes of Individuals With ID/DD |
| NCT07531940 | PHASE1 | NOT_YET_RECRUITING | Escalating Doses of Memantine in Down Syndrome (MEDS-123) |
| NCT02997020 | Not specified | ACTIVE_NOT_RECRUITING | Ivacaftor for Acquired CFTR Dysfunction in Chronic Rhinosinusitis (EDSPD Protocol) |
| NCT03379701 | Not specified | COMPLETED | Applications of Nanotechnology and Chemical Sensors for the Detection and Identification of Chronic Sinusitis Subtypes by Respiratory Samples |
| NCT04868695 | Not specified | RECRUITING | Subjective and Objective Outcome of ESS in CRSwNP |
| NCT03479476 | PHASE2/PHASE3 | COMPLETED | A Trial of Metformin in Individuals With Fragile X Syndrome |
| NCT02616796 | PHASE1/PHASE2 | COMPLETED | Effects of Social Gaze Training on Brain and Behavior in Fragile X Syndrome |
| NCT06860672 | EARLY_PHASE1 | RECRUITING | Clinical Trial of the Dual Vector Base Editor for the Treatment of the CHD3-R1025W Mutation |
| NCT00597948 | Not specified | COMPLETED | Healthy Lifestyles for People With Intellectual Disabilities |
| NCT01087320 | Not specified | RECRUITING | Genome Medical Sequencing for Gene Discovery |
| NCT01652963 | Not specified | UNKNOWN | Picture-based Computerised Assessment and Training of Cognitive Behaviour Therapy Skills |
| NCT01695395 | Not specified | COMPLETED | Mental Health Care Provision for Adults With Intellectual Disability and a Mental Disorder |
| NCT01867554 | Not specified | COMPLETED | Research and Characterization of New Genes Involved in Intellectual Disability |
| NCT01915381 | Not specified | COMPLETED | Improving Adherence Healthy Lifestyle With a Smartphone Application Based on Adults With Intellectual Disabilities |
| NCT01988623 | Not specified | COMPLETED | Pivotal Response Treatment for Individuals With Intellectual Disabilities |
| NCT02099773 | Not specified | COMPLETED | Support Staff-client Interactions With Augmentative and Alternative Communication |
| NCT02136849 | Not specified | COMPLETED | Inter-regional Project of the Great Western Exploration Approach for Exome Molecular Causes Severe Intellectual Disability Isolated or Syndromic |
| NCT02225041 | Not specified | COMPLETED | Sedation Strategy and Cognitive Outcome After Critical Illness in Early Childhood |
| NCT02414438 | Not specified | COMPLETED | Establishing the Clinical Utility of First StepDx PLUS and NextStepDx PLUS Study |
| NCT02451761 | Not specified | COMPLETED | Apparently Balanced Chromosomal Translocation/ Next-generation Sequencing/ Intellectual Disability |
| NCT02461420 | Not specified | ACTIVE_NOT_RECRUITING | Mapping the Genotype, Phenotype, and Natural History of Phelan-McDermid Syndrome |
| NCT02461459 | Not specified | ACTIVE_NOT_RECRUITING | Autism Spectrum Disorder (ASD) and Intellectual Disability (ID) Determinants in Tuberous Sclerosis Complex (TSC) |
| NCT02486081 | Not specified | COMPLETED | Development and Application-Smart Football for Movement Evaluation and Training in the Special Education Population |
| NCT02504502 | Not specified | COMPLETED | Enhancing Genomic Laboratory Reports to Enhance Communication and Empower Patients |
| NCT02513277 | Not specified | COMPLETED | Diabetes Screening & Prevention for People With Learning (Intellectual) Disabilities:STOP Diabetes Study |
| NCT02561754 | Not specified | COMPLETED | Weight Management for Adolescents With IDD |
| NCT02591446 | Not specified | COMPLETED | Transcranial Magnetic Stimulation Studies in Autism Spectrum Disorders |
Related Atlas pages
- Associated diseases: Dentici-Novelli neurodevelopmental syndrome
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Dentici-Novelli neurodevelopmental syndrome, Hodgkins lymphoma, pulmonic stenosis, TWIST1-related craniosynostosis