ZNF528

gene
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Also known as KIAA1827

Summary

ZNF528 (zinc finger protein 528, HGNC:29384) is a protein-coding gene on chromosome 19q13.41, encoding Zinc finger protein 528 (Q3MIS6). May be involved in transcriptional regulation.

Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Source: NCBI Gene 84436 — RefSeq curated summary.

At a glance

  • Clinical variants (ClinVar): 129 total
  • MANE Select transcript: NM_032423

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:29384
Approved symbolZNF528
Namezinc finger protein 528
Location19q13.41
Locus typegene with protein product
StatusApproved
AliasesKIAA1827
Ensembl geneENSG00000167555
Ensembl biotypeprotein_coding
OMIM615580
Entrez84436

Gene structure

Transcript identifiers

Ensembl transcripts: 15 — 12 protein_coding, 2 retained_intron, 1 protein_coding_CDS_not_defined

ENST00000360465, ENST00000391787, ENST00000391788, ENST00000436397, ENST00000448954, ENST00000479718, ENST00000493272, ENST00000494167, ENST00000531472, ENST00000594530, ENST00000598192, ENST00000598479, ENST00000862203, ENST00000862204, ENST00000940144

RefSeq mRNA: 1 — MANE Select: NM_032423 NM_032423

CCDS: CCDS33091

Canonical transcript exons

ENST00000360465 — 7 exons

ExonStartEnd
ENSE000011142875239836752398619
ENSE000016395915240168552401753
ENSE000016714775241512452418401
ENSE000017984205239784952397904
ENSE000024607205240651552406643
ENSE000034943095240590752406033
ENSE000036472765240194752402028

Expression profiles

Bgee: expression breadth ubiquitous, 197 present calls, max score 99.34.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 6.6475 / max 143.5361, expressed in 1511 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter IDTPM avgSamples expressed
1773036.64751511

Top tissues by expression

262 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
buccal mucosa cellCL:000233699.34gold quality
sural nerveUBERON:001548896.01gold quality
calcaneal tendonUBERON:000370193.89gold quality
tendonUBERON:000004391.15gold quality
tendon of biceps brachiiUBERON:000818890.05gold quality
right hemisphere of cerebellumUBERON:001489089.91gold quality
right uterine tubeUBERON:000130289.31gold quality
cortical plateUBERON:000534389.14gold quality
ganglionic eminenceUBERON:000402389.00gold quality
cerebellar hemisphereUBERON:000224588.79gold quality
cerebellar cortexUBERON:000212988.54gold quality
right lobe of thyroid glandUBERON:000111988.19gold quality
left lobe of thyroid glandUBERON:000112087.86gold quality
thyroid glandUBERON:000204687.36gold quality
left ovaryUBERON:000211987.35gold quality
male germ line stem cell (sensu Vertebrata) in testisCL:0000089 ∩ UBERON:000047387.32gold quality
adrenal tissueUBERON:001830387.10gold quality
tibial nerveUBERON:000132386.09gold quality
right ovaryUBERON:000211886.05gold quality
ventricular zoneUBERON:000305385.99gold quality
cerebellumUBERON:000203785.66gold quality
apex of heartUBERON:000209885.63gold quality
colonic epitheliumUBERON:000039785.62gold quality
minor salivary glandUBERON:000183085.38gold quality
right adrenal glandUBERON:000123385.11gold quality
primordial germ cell in gonadCL:0000670 ∩ UBERON:000099184.95gold quality
ovaryUBERON:000099284.95gold quality
body of uterusUBERON:000985384.85gold quality
adenohypophysisUBERON:000219684.84gold quality
right adrenal gland cortexUBERON:003582784.80gold quality

Single-cell (SCXA)

Detected in 3 experiment(s), a significant marker in 2.

ExperimentMarker?Max mean expression
E-CURD-6yes68.13
E-ANND-3yes5.74
E-MTAB-6386no460.43

Regulation

Is transcription factor: yes

JASPAR motifs

MotifNameFamily
MA1597.1ZNF528More than 3 adjacent zinc fingers

JASPAR matrix evidence (PMIDs): PMID:25690854

miRNA regulators (miRDB)

78 targeting ZNF528, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-4776-3P100.0068.731340
HSA-MIR-8485100.0077.574731
HSA-MIR-5692A100.0074.406850
HSA-MIR-366299.9973.825684
HSA-MIR-569699.9872.364487
HSA-MIR-551B-5P99.9671.283493
HSA-MIR-3682-5P99.9367.971163
HSA-MIR-515-5P99.9269.822343
HSA-MIR-519E-5P99.9269.622358
HSA-MIR-124-3P99.8973.743043
HSA-MIR-506-3P99.8973.553057
HSA-MIR-6780A-5P99.8866.692776
HSA-MIR-369-3P99.8570.522264
HSA-MIR-4728-5P99.8569.394718
HSA-MIR-548AR-3P99.8571.263889
HSA-MIR-6785-5P99.8268.684428
HSA-MIR-4799-5P99.8270.602663
HSA-MIR-1273H-5P99.7766.322471
HSA-MIR-3156-3P99.7666.72939
HSA-MIR-371499.7170.742671
HSA-MIR-30B-3P99.7065.762325
HSA-MIR-3689A-3P99.7065.732306
HSA-MIR-3689B-3P99.7065.712311
HSA-MIR-3689C99.7065.712311
HSA-MIR-6779-5P99.7065.762363
HSA-MIR-472999.6972.184233
HSA-MIR-182799.6368.573265
HSA-MIR-891B99.5969.811083
HSA-MIR-432899.5771.064094
HSA-MIR-7106-5P99.5367.473574

Literature-anchored findings (GeneRIF, showing 1)

  • Exome Sequencing Reveals a Phenotype Modifying Variant in ZNF528 in Primary Osteoporosis With a COL1A2 Deletion. (PMID:32722848)

Cross-species orthologs

0 orthologs

Paralogs (176): ZNF195 (ENSG00000005801), ZNF112 (ENSG00000062370), ZNF275 (ENSG00000063587), ZNF37A (ENSG00000075407), ZNF510 (ENSG00000081386), ZNF506 (ENSG00000081665), ZNF268 (ENSG00000090612), MZF1 (ENSG00000099326), ZNF629 (ENSG00000102870), ZNF175 (ENSG00000105497), ZNF85 (ENSG00000105750), ZFP30 (ENSG00000120784), ZNF45 (ENSG00000124459), ZNF391 (ENSG00000124613), ZNF436 (ENSG00000125945), ZNF484 (ENSG00000127081), ZNF835 (ENSG00000127903), ZNF780B (ENSG00000128000), ZSCAN10 (ENSG00000130182), ZNF317 (ENSG00000130803), ZNF331 (ENSG00000130844), ZNF227 (ENSG00000131115), ZNF141 (ENSG00000131127), ZNF132 (ENSG00000131849), ZNF189 (ENSG00000136870), ZIM3 (ENSG00000141946), ZFP14 (ENSG00000142065), ZNF514 (ENSG00000144026), ZNF300 (ENSG00000145908), RBAK (ENSG00000146587), ZNF157 (ENSG00000147117), ZNF182 (ENSG00000147118), ZNF41 (ENSG00000147124), ZNF7 (ENSG00000147789), ZNF117 (ENSG00000152926), ZNF221 (ENSG00000159905), ZNF235 (ENSG00000159917), ZNF714 (ENSG00000160352), ZNF577 (ENSG00000161551), ZNF12 (ENSG00000164631)

Protein

Protein identifiers

Zinc finger protein 528Q3MIS6 (reviewed: Q3MIS6)

All UniProt accessions (8): A0A1D5RMT7, C9JLS3, C9K0H2, Q3MIS6, F8WAL3, J3KQN0, M0QXZ2, M0QZG9

UniProt curated annotations — full annotation on UniProt →

Function. May be involved in transcriptional regulation.

Subcellular location. Nucleus.

Similarity. Belongs to the krueppel C2H2-type zinc-finger protein family.

Isoforms (2)

UniProt IDNamesCanonical?
Q3MIS6-11yes
Q3MIS6-22

RefSeq proteins (1): NP_115799* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR001909KRABDomain
IPR013087Znf_C2H2_typeDomain
IPR036051KRAB_dom_sfHomologous_superfamily
IPR036236Znf_C2H2_sfHomologous_superfamily
IPR050752C2H2-ZF_domainFamily

Pfam: PF00096, PF01352

UniProt features (20 total): zinc finger region 15, chain 1, domain 1, splice variant 1, sequence variant 1, sequence conflict 1

Structure

Experimental structures (PDB)

0 structures.

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-Q3MIS6-F171.220.14

Function

Pathways and Gene Ontology

Reactome pathways

1 pathways

IDPathway
R-HSA-212436Generic Transcription Pathway

MSigDB gene sets: 45 (showing top): MODULE_205, GOMF_SEQUENCE_SPECIFIC_DNA_BINDING, GOBP_NEGATIVE_REGULATION_OF_TRANSCRIPTION_BY_RNA_POLYMERASE_II, GOBP_NEGATIVE_REGULATION_OF_NUCLEOBASE_CONTAINING_COMPOUND_METABOLIC_PROCESS, CTIP_DN.V1_UP, KRAS.300_UP.V1_UP, KRAS.600_UP.V1_UP, GOMF_TRANSCRIPTION_REGULATOR_ACTIVITY, TRIP13_TARGET_GENES, ZNF512_TARGET_GENES, ZNF528_TARGET_GENES, MIR5696, MIR4729, MIR1827, MIR519E_5P

GO Biological Process (4): negative regulation of transcription by RNA polymerase II (GO:0000122), regulation of transcription by RNA polymerase II (GO:0006357), positive regulation of biosynthetic process (GO:0009891), regulation of DNA-templated transcription (GO:0006355)

GO Molecular Function (5): RNA polymerase II cis-regulatory region sequence-specific DNA binding (GO:0000978), DNA-binding transcription factor activity, RNA polymerase II-specific (GO:0000981), zinc ion binding (GO:0008270), DNA binding (GO:0003677), metal ion binding (GO:0046872)

GO Cellular Component (1): nucleus (GO:0005634)

Reactome top-level categories

Rollup of top-1 pathways:

CategoryPathways
RNA Polymerase II Transcription1

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
regulation of transcription by RNA polymerase II2
transcription by RNA polymerase II2
RNA polymerase II transcription regulatory region sequence-specific DNA binding2
negative regulation of DNA-templated transcription1
regulation of DNA-templated transcription1
biosynthetic process1
regulation of biosynthetic process1
positive regulation of metabolic process1
DNA-templated transcription1
regulation of gene expression1
regulation of RNA biosynthetic process1
cis-regulatory region sequence-specific DNA binding1
chromatin1
DNA-binding transcription factor activity1
transition metal ion binding1
nucleic acid binding1
cation binding1
intracellular membrane-bounded organelle1

Protein interactions and networks

STRING

288 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
ZNF528GPR20Q99678424
ZNF528CCL25O15444405
ZNF528CXCL17Q6UXB2364
ZNF528EMC9Q9Y3B6357
ZNF528CCL14Q16627353
ZNF528SYDE2Q5VT97321
ZNF528SYCP2LQ5T4T6311
ZNF528ZZEF1O43149291
ZNF528RALGPS1Q5JS13280
ZNF528RUSC1Q9BVN2280
ZNF528PTOV1Q86YD1277
ZNF528TMEM51Q9NW97275
ZNF528URGCPQ8TCY9270
ZNF528TCERG1LQ5VWI1267
ZNF528RCBTB1Q8NDN9257

IntAct

2 interactions, top by confidence:

ABTypeScore
DSCR9ZNF528psi-mi:“MI:0915”(physical association)0.000

BioGRID (5): ZNF528 (Affinity Capture-RNA), ZNF528 (Affinity Capture-MS), ZNF528 (Two-hybrid), ZNF528 (Affinity Capture-RNA), ZNF528 (Affinity Capture-RNA)

ESM2 similar proteins: A0JNB1, A1YF12, A1YG88, A2T759, A3KN32, B2RUI1, O43296, O75123, P10072, P17020, P17097, P51814, P52736, P52740, Q07230, Q08ER8, Q13398, Q14590, Q32KN0, Q3KQV3, Q3MIS6, Q4V8A8, Q5CZA5, Q5RBQ3, Q5RBX0, Q5RCD9, Q5RCX4, Q6GQR8, Q6NX45, Q6P9A3, Q6PK81, Q7TSH9, Q7TSI0, Q7Z7L9, Q86UD4, Q8BFS8, Q8BLB0, Q8IVP9, Q8IZ26, Q8N9F8

Diamond homologs: A0A1W2PQL4, A6NK75, A6NN14, A6NNF4, A6NP11, A8MQ14, A8MTY0, A8MUV8, A8MXY4, B4DX44, B4DXR9, E9PYI1, O14628, O43345, O75290, O75346, O75373, O75437, O95780, P0CB33, P0DKX0, P0DPD5, P16373, P17019, P17038, P21506, P35789, P52736, P52738, P52744, Q03923, Q03924, Q03936, Q03938, Q05481, Q14586, Q14593, Q14929, Q15928, Q3KNS6

SIGNOR signaling

0 interactions.

Disease & clinical

Clinical variants and AI predictions

ClinVar

129 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic0
Likely pathogenic0
Uncertain significance109
Likely benign9
Benign3

Top pathogenic / likely-pathogenic (0)

SpliceAI

1041 predictions. Top by Δscore:

VariantEffectΔscore
19:52405901:TTTCA:Tacceptor_loss1.0000
19:52405902:TTCA:Tacceptor_loss1.0000
19:52405903:TCAG:Tacceptor_loss1.0000
19:52405904:CAG:Cacceptor_loss1.0000
19:52405905:A:AGacceptor_gain1.0000
19:52405905:A:ATacceptor_loss1.0000
19:52405905:AG:Aacceptor_gain1.0000
19:52405906:G:GGacceptor_gain1.0000
19:52405906:GG:Gacceptor_gain1.0000
19:52405994:G:GTdonor_gain1.0000
19:52405994:G:Tdonor_gain1.0000
19:52404202:G:GGdonor_gain0.9900
19:52405905:AGG:Aacceptor_gain0.9900
19:52405906:GGG:Gacceptor_gain0.9900
19:52405906:GGGA:Gacceptor_gain0.9900
19:52405906:GGGAC:Gacceptor_gain0.9900
19:52405949:G:GTdonor_gain0.9900
19:52406032:GG:Gdonor_gain0.9900
19:52406033:GG:Gdonor_gain0.9900
19:52406039:GA:Gdonor_gain0.9900
19:52406514:GGA:Gacceptor_gain0.9900
19:52406618:G:GTdonor_gain0.9900
19:52404391:C:Gdonor_gain0.9800
19:52405981:G:GTdonor_gain0.9800
19:52405992:GGGAC:Gdonor_gain0.9800
19:52405993:GGACG:Gdonor_gain0.9800
19:52406033:GGTGA:Gdonor_loss0.9800
19:52406034:GTG:Gdonor_loss0.9800
19:52406035:T:Adonor_loss0.9800
19:52406036:G:GCdonor_loss0.9800

AlphaMissense

4204 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
19:52415936:T:CF362L0.995
19:52415938:T:AF362L0.995
19:52415938:T:GF362L0.995
19:52415768:T:CF306L0.994
19:52415770:C:AF306L0.994
19:52415770:C:GF306L0.994
19:52415684:T:CF278L0.993
19:52415686:T:AF278L0.993
19:52415686:T:GF278L0.993
19:52416356:T:CF502L0.993
19:52416358:C:AF502L0.993
19:52416358:C:GF502L0.993
19:52416440:T:CF530L0.993
19:52416442:T:AF530L0.993
19:52416442:T:GF530L0.993
19:52415600:T:CF250L0.992
19:52415602:C:AF250L0.992
19:52415602:C:GF250L0.992
19:52415787:T:CL312P0.992
19:52415852:T:CF334L0.992
19:52415854:T:AF334L0.992
19:52415854:T:GF334L0.992
19:52415799:A:CQ316P0.991
19:52405940:T:CF17L0.990
19:52405942:C:AF17L0.990
19:52405942:C:GF17L0.990
19:52416020:T:CF390L0.990
19:52416022:T:AF390L0.990
19:52416022:T:GF390L0.990
19:52415619:T:CL256P0.989

dbSNP variants (sampled 300 via entrez): RS1000048331 (19:52407435 C>G,T), RS1000066948 (19:52400397 C>G,T), RS1000137941 (19:52397623 A>G), RS1000230105 (19:52413160 C>A,T), RS1000240560 (19:52418359 T>C,G), RS1000631745 (19:52414024 C>A,T), RS1000832615 (19:52403310 A>G), RS1000882355 (19:52397389 C>A), RS1000936129 (19:52407107 G>A), RS1000957788 (19:52408840 T>C), RS1000988520 (19:52417455 A>G), RS1001189726 (19:52418469 C>G), RS1001203741 (19:52413864 A>G), RS1001282834 (19:52412720 G>C,T), RS1001620677 (19:52407725 G>A)

Disease associations

OMIM: gene MIM:615580 | disease phenotypes: MIM:190300

GenCC curated gene-disease

Mondo (1): essential tremor (MONDO:0003233)

Orphanet (1): NON RARE IN EUROPE: Hereditary essential tremor (Orphanet:862)

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

0 associations (top):

MeSH disease descriptors (1)

DescriptorNameTree numbers
D020329Essential TremorC10.228.662.350

Drugs & pharmacology

Drug and pharmacology data

Is drug target: no

PharmGKB: 1 entry (VIP=true, CPIC=false)

CTD chemical–gene interactions

15 total (human), top 15 by PubMed support.

ChemicalActions (top 5)PubMed papers
Air Pollutantsaffects expression, increases abundance, increases expression3
bisphenol Aaffects cotreatment, decreases methylation, decreases expression2
sodium arsenitedecreases expression, increases expression2
Particulate Matterincreases abundance, increases expression2
GSK-J4decreases expression1
triphenyl phosphateaffects expression1
potassium chromate(VI)increases expression1
Sunitinibincreases expression1
Fulvestrantaffects cotreatment, decreases methylation1
Benzo(a)pyreneaffects methylation, increases methylation1
Doxorubicindecreases expression1
Folic Aciddecreases expression1
Ozoneaffects expression, increases abundance1
Vanadatesdecreases expression1
Aflatoxin B1decreases expression1

Clinical trials (associated diseases)

235 trials via MONDO — disease-level, not drug-specific.

TrialPhaseStatusTitle
NCT00439699PHASE4COMPLETEDA Pilot Clinical Trial Of Memantine for Essential Tremor
NCT00584376PHASE4COMPLETEDPregabalin (Lyrica) for the Treatment of Essential Tremor
NCT00998660PHASE4COMPLETEDRECHARGE Sub-Study to the Implantable Systems Performance Registry (ISPR)
NCT02111369PHASE4COMPLETEDPropranolol and Botulinum Toxin for Essential Vocal Tremor
NCT02495883PHASE4COMPLETEDFunctional Imaging of Tremor Circuits and Mechanisms of Treatment Response
NCT00018564PHASE3COMPLETEDNovel Therapies for Essential Tremor
NCT00236496PHASE3COMPLETEDA Comparison of the Efficacy and Safety of Topiramate Versus Placebo in Treating Tremor of Unknown Cause.
NCT01441284PHASE3WITHDRAWNEfficacy of Pramipexole Extended Release in the Treatment of Essential Tremor
NCT04193527PHASE3COMPLETEDA Study to Evaluate the Diagnostic Efficacy of DaTSCAN™ Ioflupane (123I) Injection in Single Photon Emission Computed Tomography (SPECT) for the Diagnosis of Parkinsonian Syndrome (PS) in Chinese Patients
NCT04265209PHASE3COMPLETED[18F] LBT-999 PET Compared to [123I]-FP/CIT SPECT to Distinguish Between Parkinson’s Diseases and Essential Tremor
NCT06087276PHASE3ENROLLING_BY_INVITATIONEssential 3 - Decentralized, Phase 3 Study Evaluating the Safety and Efficacy of Ulixacaltamide in Essential Tremor (ET)
NCT00080366PHASE2COMPLETEDOctanol to Treat Essential Tremor
NCT00102596PHASE2COMPLETEDClinical Trial Characterizing the Bioavailability of 1-Octanol in Adults With Ethanol-responsive Essential Tremor
NCT00223743PHASE2COMPLETEDA Safety/Efficacy Trial of Zonisamide for Essential Tremor
NCT00321087PHASE2TERMINATEDA Study of T2000 in Essential Tremor
NCT00598078PHASE2COMPLETEDMultiple-dose,Double-blind,Placebo-controlled Study of Sodium Oxybate in Patients With Essential Tremor
NCT00655278PHASE2TERMINATEDT2000 in Essential Tremor - Open Label Continuation
NCT01332695PHASE2COMPLETEDA Pilot Efficacy and Safety Study of ST101 in Essential Tremor
NCT02277106PHASE2COMPLETEDEvaluate SAGE-547 in Participants With Essential Tremor
NCT02551848PHASE2UNKNOWNKinematic-based BoNT-A Injections for Bilateral ET
NCT02668146PHASE2UNKNOWNAn Efficacy/Safety Study of Perampanel for Reducing Essential Tremor
NCT02978781PHASE2COMPLETEDA Study to Evaluate SAGE-217 in Participants With Essential Tremor
NCT03101241PHASE2COMPLETEDA Phase 2 RCT Study of CX-8998 for Essential Tremor
NCT03688685PHASE2COMPLETEDA Clinical Study to Evaluate CAD-1883 in Essential Tremor
NCT03780426PHASE2COMPLETEDtSMS in Essential Tremor
NCT04305275PHASE2COMPLETEDA Study to Evaluate the Efficacy, Safety, and Tolerability of SAGE-324 in Participants With Essential Tremor
NCT04727658PHASE2TERMINATEDLinac FRACtionated Radiosurgical THALamotomie in Tremors (FRACTHAL)
NCT04880616PHASE2COMPLETEDSafety, Efficacy, and Tolerability of NBI-827104 for the Treatment of Essential Tremor
NCT05021978PHASE2COMPLETEDA Clinical Trial of PRAX-944 in Participants With Essential Tremor
NCT05021991PHASE2COMPLETEDA Clinical Trial of 2 Doses of PRAX-944 in Participants With Essential Tremor
NCT05122650PHASE2COMPLETEDA Study To Assess the Safety and Efficacy of JZP385 in the Treatment of Adults With Moderate to Severe Essential Tremor (ET)
NCT05173012PHASE2COMPLETEDStudy to Evaluate SAGE-324 in Participants With Essential Tremor
NCT05387642PHASE2WITHDRAWNA Clinical Trial of PRAX-114 in Participants With Essential Tremor
NCT06312800PHASE2WITHDRAWNAcamprosate and Methazolamide for Essential Tremor
NCT06821906PHASE2RECRUITINGStereotactic Radiosurgery in the Treatment of Essential Tremor
NCT07074002PHASE2RECRUITINGProof of Concept Study on BP1.4979 Effect on Essential Tremor
NCT07103265PHASE2NOT_YET_RECRUITINGDeveloping a New LIFU Neuromodulation Method to Suppress Tremor
NCT00001986PHASE1COMPLETED1-Octanol to Treat Essential Tremor
NCT00016679PHASE1COMPLETED1-Octanol to Treat Essential Tremor
NCT01304758PHASE1COMPLETEDExAblate Transcranial MR Guided Focused Ultrasound in the Treatment of Essential Tremor
  • Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): essential tremor