ZNF559
gene geneOn this page
Also known as MGC13105
Summary
ZNF559 (zinc finger protein 559, HGNC:28197) is a protein-coding gene on chromosome 19p13.2, encoding Zinc finger protein 559 (Q9BR84). May be involved in transcriptional regulation.
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.
Source: NCBI Gene 84527 — RefSeq curated summary.
At a glance
- Clinical variants (ClinVar): 110 total
- MANE Select transcript:
NM_032497
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:28197 |
| Approved symbol | ZNF559 |
| Name | zinc finger protein 559 |
| Location | 19p13.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | MGC13105 |
| Ensembl gene | ENSG00000188321 |
| Ensembl biotype | protein_coding |
| Entrez | 84527 |
Gene structure
Transcript identifiers
Ensembl transcripts: 44 — 44 protein_coding
ENST00000317221, ENST00000393883, ENST00000585352, ENST00000585377, ENST00000586255, ENST00000587557, ENST00000588124, ENST00000589208, ENST00000591652, ENST00000592298, ENST00000592504, ENST00000592896, ENST00000603380, ENST00000605750, ENST00000861660, ENST00000861661, ENST00000861662, ENST00000861663, ENST00000861664, ENST00000861665, ENST00000861666, ENST00000861667, ENST00000861668, ENST00000861669, ENST00000861670, ENST00000861671, ENST00000861672, ENST00000861673, ENST00000861674, ENST00000861675, ENST00000861676, ENST00000861677, ENST00000861678, ENST00000861679, ENST00000861680, ENST00000927122, ENST00000927123, ENST00000927124, ENST00000965257, ENST00000965258, ENST00000965259, ENST00000965260, ENST00000965261, ENST00000965262
RefSeq mRNA: 8 — MANE Select: NM_032497
NM_001202406, NM_001202407, NM_001202408, NM_001202409, NM_001202410, NM_001202411, NM_001202412, NM_032497
CCDS: CCDS12211, CCDS59349, CCDS62531, CCDS62532
Canonical transcript exons
ENST00000603380 — 7 exons
| Exon | Start | End |
|---|---|---|
| ENSE00003559684 | 9337796 | 9337858 |
| ENSE00003560591 | 9341102 | 9341184 |
| ENSE00003595962 | 9324179 | 9324228 |
| ENSE00003642293 | 9324695 | 9324780 |
| ENSE00003661642 | 9339193 | 9339319 |
| ENSE00003679825 | 9338494 | 9338582 |
| ENSE00003914055 | 9341695 | 9345871 |
Expression profiles
Bgee: expression breadth ubiquitous, 243 present calls, max score 96.91.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 5.7707 / max 143.1427, expressed in 1433 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 173695 | 5.7707 | 1433 |
Top tissues by expression
252 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| secondary oocyte | CL:0000655 | 96.91 | gold quality |
| oocyte | CL:0000023 | 95.41 | gold quality |
| ganglionic eminence | UBERON:0004023 | 92.62 | gold quality |
| ventricular zone | UBERON:0003053 | 92.36 | gold quality |
| parietal pleura | UBERON:0002400 | 91.34 | gold quality |
| calcaneal tendon | UBERON:0003701 | 91.27 | gold quality |
| left ovary | UBERON:0002119 | 90.61 | gold quality |
| right ovary | UBERON:0002118 | 90.40 | gold quality |
| tibia | UBERON:0000979 | 90.11 | gold quality |
| visceral pleura | UBERON:0002401 | 90.08 | gold quality |
| ovary | UBERON:0000992 | 89.69 | gold quality |
| right uterine tube | UBERON:0001302 | 89.69 | gold quality |
| thymus | UBERON:0002370 | 89.34 | gold quality |
| pituitary gland | UBERON:0000007 | 89.26 | gold quality |
| adenohypophysis | UBERON:0002196 | 89.25 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 88.87 | gold quality |
| cortical plate | UBERON:0005343 | 88.87 | gold quality |
| tendon | UBERON:0000043 | 88.80 | gold quality |
| body of uterus | UBERON:0009853 | 88.80 | gold quality |
| left ventricle myocardium | UBERON:0006566 | 88.59 | gold quality |
| endocervix | UBERON:0000458 | 87.67 | gold quality |
| cardiac muscle of right atrium | UBERON:0003379 | 87.56 | gold quality |
| myocardium | UBERON:0002349 | 87.49 | gold quality |
| tendon of biceps brachii | UBERON:0008188 | 87.45 | silver quality |
| tibial nerve | UBERON:0001323 | 87.16 | gold quality |
| apex of heart | UBERON:0002098 | 87.13 | gold quality |
| corpus callosum | UBERON:0002336 | 86.77 | gold quality |
| spleen | UBERON:0002106 | 86.76 | gold quality |
| thyroid gland | UBERON:0002046 | 86.67 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 86.57 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-100618 | yes | 365.48 |
| E-ANND-3 | yes | 4.03 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): AR
miRNA regulators (miRDB)
38 targeting ZNF559, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4262 | 100.00 | 73.26 | 3931 |
| HSA-MIR-188-3P | 100.00 | 68.76 | 1240 |
| HSA-MIR-3064-3P | 100.00 | 70.09 | 1254 |
| HSA-MIR-181A-5P | 99.99 | 72.96 | 2995 |
| HSA-MIR-181B-5P | 99.99 | 72.97 | 2996 |
| HSA-MIR-181C-5P | 99.99 | 72.95 | 2996 |
| HSA-MIR-181D-5P | 99.99 | 73.04 | 2997 |
| HSA-MIR-4302 | 99.89 | 67.94 | 1187 |
| HSA-MIR-6515-3P | 99.82 | 68.19 | 1933 |
| HSA-MIR-3680-3P | 99.75 | 72.51 | 3095 |
| HSA-MIR-3714 | 99.71 | 70.74 | 2671 |
| HSA-MIR-1179 | 99.71 | 68.70 | 1040 |
| HSA-MIR-3059-5P | 99.70 | 69.93 | 2491 |
| HSA-MIR-545-5P | 99.66 | 70.18 | 2308 |
| HSA-MIR-4666B | 99.64 | 68.69 | 1282 |
| HSA-MIR-3685 | 99.62 | 68.83 | 1621 |
| HSA-MIR-4753-5P | 99.54 | 68.51 | 1356 |
| HSA-MIR-6740-3P | 99.48 | 68.49 | 1392 |
| HSA-MIR-766-3P | 99.47 | 65.24 | 1811 |
| HSA-MIR-4316 | 99.37 | 65.75 | 1360 |
| HSA-MIR-4427 | 99.34 | 70.33 | 1854 |
| HSA-MIR-410-3P | 99.27 | 69.98 | 2457 |
| HSA-MIR-877-3P | 99.09 | 68.10 | 1637 |
| HSA-MIR-10524-5P | 99.05 | 66.08 | 963 |
| HSA-MIR-3164 | 99.02 | 68.39 | 1071 |
| HSA-MIR-6820-3P | 99.02 | 68.50 | 1035 |
| HSA-MIR-1294 | 98.91 | 69.26 | 1030 |
| HSA-MIR-9986 | 98.91 | 69.28 | 1024 |
| HSA-MIR-3145-3P | 98.85 | 69.07 | 2031 |
| HSA-MIR-384 | 98.71 | 67.34 | 1229 |
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| drosophila_melanogaster | CG2712 | FBGN0024975 |
| drosophila_melanogaster | Phs | FBGN0036522 |
| drosophila_melanogaster | CG3281 | FBGN0260741 |
Paralogs (62): ZNF582 (ENSG00000018869), ZNF264 (ENSG00000083844), ZNF343 (ENSG00000088876), ZNF684 (ENSG00000117010), ZNF133 (ENSG00000125846), ZNF557 (ENSG00000130544), ZNF337 (ENSG00000130684), ZNF20 (ENSG00000132010), ZFP37 (ENSG00000136866), ZNF614 (ENSG00000142556), KRBOX4 (ENSG00000147121), ZNF599 (ENSG00000153896), ZNF19 (ENSG00000157429), ZNF589 (ENSG00000164048), PRDM9 (ENSG00000164256), ZNF180 (ENSG00000167384), ZNF558 (ENSG00000167785), ZNF35 (ENSG00000169981), ZNF778 (ENSG00000170100), ZNF439 (ENSG00000171291), ZNF440 (ENSG00000171295), ZNF556 (ENSG00000172000), ZNF554 (ENSG00000172006), ZNF596 (ENSG00000172748), ZNF80 (ENSG00000174255), ZNF266 (ENSG00000174652), ZNF25 (ENSG00000175395), ZNF77 (ENSG00000175691), ZNF169 (ENSG00000175787), ZNF404 (ENSG00000176222), ZNF491 (ENSG00000177599), ZNF620 (ENSG00000177842), ZNF619 (ENSG00000177873), ZNF875 (ENSG00000181666), ZNF329 (ENSG00000181894), ZFP90 (ENSG00000184939), ZNF566 (ENSG00000186017), ZNF529 (ENSG00000186020), ZNF749 (ENSG00000186230), ZNF555 (ENSG00000186300)
Protein
Protein identifiers
Zinc finger protein 559 — Q9BR84 (reviewed: Q9BR84)
All UniProt accessions (11): A0A0A0MTS4, A0A0A0MTT2, Q9BR84, K7EK98, K7EKU6, K7EM21, K7EN17, K7EQI4, K7ERK9, S4R3F2, S4R3U0
UniProt curated annotations — full annotation on UniProt →
Function. May be involved in transcriptional regulation.
Subcellular location. Nucleus.
Similarity. Belongs to the krueppel C2H2-type zinc-finger protein family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9BR84-1 | 1 | yes |
| Q9BR84-2 | 2 |
RefSeq proteins (8): NP_001189335, NP_001189336, NP_001189337, NP_001189338, NP_001189339, NP_001189340, NP_001189341, NP_115886* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001909 | KRAB | Domain |
| IPR013087 | Znf_C2H2_type | Domain |
| IPR036051 | KRAB_dom_sf | Homologous_superfamily |
| IPR036236 | Znf_C2H2_sf | Homologous_superfamily |
| IPR050826 | Krueppel_C2H2_ZnFinger | Family |
Pfam: PF00096, PF01352
UniProt features (18 total): zinc finger region 13, splice variant 2, chain 1, domain 1, sequence variant 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9BR84-F1 | 62.81 | 0.26 |
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-212436 | Generic Transcription Pathway |
MSigDB gene sets: 106 (showing top):
GSE18804_SPLEEN_MACROPHAGE_VS_TUMORAL_MACROPHAGE_UP, MODULE_256, MODULE_480, GCM_NF2, MODULE_333, MODULE_427, SENESE_HDAC3_TARGETS_DN, chr19p13, GOMF_SEQUENCE_SPECIFIC_DNA_BINDING, JOHNSTONE_PARVB_TARGETS_3_DN, GOMF_TRANSCRIPTION_REGULATOR_ACTIVITY, BANP_TARGET_GENES, CBX5_TARGET_GENES, DYRK1A_TARGET_GENES, HUANG_DASATINIB_SENSITIVITY_UP
GO Biological Process (2): regulation of transcription by RNA polymerase II (GO:0006357), regulation of DNA-templated transcription (GO:0006355)
GO Molecular Function (6): RNA polymerase II transcription regulatory region sequence-specific DNA binding (GO:0000977), DNA-binding transcription factor activity, RNA polymerase II-specific (GO:0000981), zinc ion binding (GO:0008270), DNA binding (GO:0003677), protein binding (GO:0005515), metal ion binding (GO:0046872)
GO Cellular Component (1): nucleus (GO:0005634)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| RNA Polymerase II Transcription | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| regulation of DNA-templated transcription | 1 |
| transcription by RNA polymerase II | 1 |
| DNA-templated transcription | 1 |
| regulation of gene expression | 1 |
| regulation of RNA biosynthetic process | 1 |
| transcription cis-regulatory region binding | 1 |
| chromatin | 1 |
| RNA polymerase II transcription regulatory region sequence-specific DNA binding | 1 |
| DNA-binding transcription factor activity | 1 |
| regulation of transcription by RNA polymerase II | 1 |
| transition metal ion binding | 1 |
| nucleic acid binding | 1 |
| binding | 1 |
| cation binding | 1 |
| intracellular membrane-bounded organelle | 1 |
Protein interactions and networks
STRING
642 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ZNF559 | ZNF385B | Q569K4 | 507 |
| ZNF559 | ZNF827 | Q17R98 | 493 |
| ZNF559 | FAM98C | Q17RN3 | 473 |
| ZNF559 | TSHZ3 | Q63HK5 | 446 |
| ZNF559 | ZNF18 | P17022 | 417 |
| ZNF559 | ZNF407 | Q9C0G0 | 409 |
| ZNF559 | ZNF292 | O60281 | 401 |
| ZNF559 | GLIS1 | Q8NBF1 | 394 |
| ZNF559 | FEZF1 | A0PJY2 | 377 |
| ZNF559 | IQCN | Q9H0B3 | 370 |
| ZNF559 | METTL26 | Q96S19 | 369 |
| ZNF559 | ANKRD18A | Q8IVF6 | 349 |
| ZNF559 | TTK | P33981 | 348 |
| ZNF559 | ZBTB20 | Q9HC78 | 347 |
| ZNF559 | ZNF774 | Q6NX45 | 342 |
IntAct
37 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| MDFI | ZNF559 | psi-mi:“MI:0915”(physical association) | 0.830 |
| ZNF559 | MDFI | psi-mi:“MI:0915”(physical association) | 0.830 |
| KRTAP10-5 | ZNF559 | psi-mi:“MI:0915”(physical association) | 0.670 |
| ZNF559 | KRTAP10-5 | psi-mi:“MI:0915”(physical association) | 0.670 |
| ZNF559 | KRTAP4-2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ZNF559 | psi-mi:“MI:0915”(physical association) | 0.560 | |
| ZNF559 | psi-mi:“MI:0915”(physical association) | 0.560 | |
| KRTAP4-2 | ZNF559 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CABP5 | ZNF559 | psi-mi:“MI:0915”(physical association) | 0.560 |
| KRTAP10-8 | ZNF559 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ZNF559 | CARD10 | psi-mi:“MI:0915”(physical association) | 0.560 |
| MAPK9 | ZNF559 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ZNF559 | CABP5 | psi-mi:“MI:0915”(physical association) | 0.560 |
| KRTAP10-1 | ZNF559 | psi-mi:“MI:0915”(physical association) | 0.550 |
| KRTAP10-3 | ZNF559 | psi-mi:“MI:0915”(physical association) | 0.370 |
| ZNF559 | CARD10 | psi-mi:“MI:0915”(physical association) | 0.000 |
| ZNF559 | MDFI | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (22): ZNF559 (Two-hybrid), KRTAP4-2 (Two-hybrid), KRTAP10-1 (Two-hybrid), KRTAP10-5 (Two-hybrid), KRTAP10-3 (Two-hybrid), ZNF559 (Two-hybrid), ZNF559 (Two-hybrid), ZNF559 (Protein-RNA), KRTAP10-1 (Two-hybrid), KRTAP10-3 (Two-hybrid), KRTAP10-5 (Two-hybrid), MDFI (Two-hybrid), ZNF559 (Two-hybrid), ZNF559 (Two-hybrid), ZNF559 (Two-hybrid)
ESM2 similar proteins: A0JPL0, A6NK53, E7ETH6, E9Q8G5, O14628, P21506, P51508, Q09FC8, Q13360, Q2M218, Q2M3X9, Q2VY69, Q3KQV3, Q3SY52, Q4R882, Q5HY98, Q5REN4, Q5RES8, Q68DI1, Q6NX49, Q6P280, Q6PG37, Q6V9R5, Q6ZMW2, Q7Z340, Q86XU0, Q8IYI8, Q8N587, Q8N720, Q8N859, Q8NB42, Q8NDW4, Q8NEK5, Q8WXB4, Q96MR9, Q96MU6, Q96NG8, Q96NJ3, Q96SR6, Q9BR84
Diamond homologs: A0JPK3, A8MT65, C9JN71, E9QAG8, G3X9G7, O75820, P16373, P16374, P16415, P17017, P17024, P17025, P51815, P52737, Q08AG5, Q08ER8, Q0D2J5, Q15973, Q2M218, Q3KP31, Q3V080, Q494X3, Q4R4C7, Q5MYW4, Q5R9F0, Q5R9S5, Q5REI6, Q5REK1, Q68EA5, Q6P560, Q6P5C7, Q6ZQV5, Q7L945, Q86T29, Q8BGV5, Q8C6P8, Q8IYI8, Q8IZC7, Q8N7K0, Q8N972
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
110 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 107 |
| Likely benign | 2 |
| Benign | 1 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1259 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 19:9338492:A:G | acceptor_gain | 1.0000 |
| 19:9338493:G:GG | acceptor_gain | 0.9900 |
| 19:9324227:AGGTA:A | donor_loss | 0.9800 |
| 19:9324228:GGT:G | donor_loss | 0.9800 |
| 19:9324229:GT:G | donor_loss | 0.9800 |
| 19:9324230:T:A | donor_loss | 0.9800 |
| 19:9324693:A:G | acceptor_gain | 0.9800 |
| 19:9338491:A:AG | acceptor_gain | 0.9800 |
| 19:9339316:GTAG:G | donor_gain | 0.9800 |
| 19:9341861:A:AG | acceptor_gain | 0.9800 |
| 19:9324229:G:GG | donor_gain | 0.9700 |
| 19:9330191:T:TA | donor_gain | 0.9600 |
| 19:9330192:A:AA | donor_gain | 0.9600 |
| 19:9341100:A:AG | acceptor_gain | 0.9600 |
| 19:9341101:G:GG | acceptor_gain | 0.9600 |
| 19:9341862:C:G | acceptor_gain | 0.9600 |
| 19:9324226:GAG:G | donor_gain | 0.9500 |
| 19:9324692:AAG:A | acceptor_gain | 0.9500 |
| 19:9338489:TTAA:T | acceptor_loss | 0.9500 |
| 19:9338490:TAA:T | acceptor_loss | 0.9500 |
| 19:9338491:AAG:A | acceptor_loss | 0.9500 |
| 19:9338492:A:T | acceptor_loss | 0.9500 |
| 19:9338493:G:A | acceptor_loss | 0.9500 |
| 19:9338493:G:GA | acceptor_loss | 0.9500 |
| 19:9338493:GATC:G | acceptor_gain | 0.9500 |
| 19:9341864:A:G | acceptor_gain | 0.9500 |
| 19:9338490:TAAGA:T | acceptor_gain | 0.9400 |
| 19:9341101:GATT:G | acceptor_gain | 0.9400 |
| 19:9341860:CACA:C | acceptor_gain | 0.9400 |
| 19:9341861:ACAA:A | acceptor_gain | 0.9400 |
AlphaMissense
3586 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 19:9342535:T:C | F362L | 0.997 |
| 19:9342537:T:A | F362L | 0.997 |
| 19:9342537:T:G | F362L | 0.997 |
| 19:9342703:T:C | F418L | 0.996 |
| 19:9342705:C:A | F418L | 0.996 |
| 19:9342705:C:G | F418L | 0.996 |
| 19:9342787:T:C | F446L | 0.996 |
| 19:9342789:T:A | F446L | 0.996 |
| 19:9342789:T:G | F446L | 0.996 |
| 19:9342871:T:C | F474L | 0.996 |
| 19:9342873:C:A | F474L | 0.996 |
| 19:9342873:C:G | F474L | 0.996 |
| 19:9342955:T:C | F502L | 0.996 |
| 19:9342957:T:A | F502L | 0.996 |
| 19:9342957:T:G | F502L | 0.996 |
| 19:9342451:T:C | F334L | 0.995 |
| 19:9342453:C:A | F334L | 0.995 |
| 19:9342453:C:G | F334L | 0.995 |
| 19:9339226:T:C | F23L | 0.993 |
| 19:9339228:C:A | F23L | 0.993 |
| 19:9339228:C:G | F23L | 0.993 |
| 19:9342485:G:C | R345P | 0.993 |
| 19:9339227:T:C | F23S | 0.992 |
| 19:9342619:T:C | F390L | 0.992 |
| 19:9342621:T:A | F390L | 0.992 |
| 19:9342621:T:G | F390L | 0.992 |
| 19:9342890:T:C | L480P | 0.992 |
| 19:9342554:T:C | L368P | 0.991 |
| 19:9342732:T:A | H427Q | 0.991 |
| 19:9342732:T:G | H427Q | 0.991 |
dbSNP variants (sampled 300 via entrez): RS1000013275 (19:9325018 C>G), RS1000065651 (19:9323089 A>C), RS1000103492 (19:9327484 G>A), RS1000179104 (19:9344238 CAAAAA>C,CAAA,CAAAA,CAAAAAA), RS1000246152 (19:9341413 C>T), RS1000354761 (19:9323248 C>T), RS1000489581 (19:9345944 T>C), RS1000908640 (19:9327330 C>A,T), RS1000934049 (19:9332508 G>T), RS1000971401 (19:9335014 T>C), RS1000985846 (19:9342510 T>C), RS1001044385 (19:9337402 G>A,C), RS1001055645 (19:9340136 G>C), RS1001241477 (19:9328278 T>C), RS1001297618 (19:9335190 A>C,G)
Disease associations
OMIM: gene `` | disease phenotypes:
GenCC curated gene-disease
Mondo (1): autism spectrum disorder (MONDO:0005258)
Orphanet (1): NON RARE IN EUROPE: Autism (Orphanet:106)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
0 associations (top):
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
41 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| methacrylaldehyde | affects cotreatment, increases expression, increases abundance | 2 |
| Acrolein | affects cotreatment, increases expression, increases abundance | 2 |
| Ozone | increases expression, increases abundance, affects cotreatment | 2 |
| Cyclosporine | decreases expression, increases expression | 2 |
| GSK-J4 | decreases expression | 1 |
| bisphenol F | affects cotreatment, decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| alpha-pinene | affects cotreatment, increases expression, increases abundance | 1 |
| bisphenol A | increases expression | 1 |
| terbufos | increases methylation | 1 |
| beta-methylcholine | affects expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| pentabromodiphenyl ether | decreases expression | 1 |
| rofecoxib | decreases expression | 1 |
| abrine | decreases expression | 1 |
| Temozolomide | increases expression | 1 |
| Decitabine | increases expression | 1 |
| Leflunomide | decreases expression | 1 |
| Air Pollutants | affects cotreatment, increases abundance, increases expression | 1 |
| Air Pollutants, Occupational | decreases expression | 1 |
| Allergens | decreases expression | 1 |
| Atrazine | decreases expression | 1 |
| Benzo(a)pyrene | decreases methylation | 1 |
| Dexamethasone | affects cotreatment, decreases expression | 1 |
| Fonofos | increases methylation | 1 |
| Ethyl Methanesulfonate | increases expression | 1 |
| Formaldehyde | increases expression | 1 |
| Indomethacin | decreases expression, affects cotreatment | 1 |
| Methyl Methanesulfonate | increases expression | 1 |
| Nickel | decreases expression | 1 |
Cellosaurus cell lines
2 cell lines: 2 embryonic stem cell
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_A8I9 | SEES3-1V human ZNF559, clone1 | Embryonic stem cell | Male |
| CVCL_A8J0 | SEES3-1V human ZNF559, clone2 | Embryonic stem cell | Male |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00391261 | PHASE4 | COMPLETED | An Open-label Trial of Metformin for Weight Control of Pediatric Patients on Antipsychotic Medications. |
| NCT01028820 | PHASE4 | COMPLETED | FMRI Brain Activation of Aripiprazole Treatment in Autism Spectrum Disorders |
| NCT01333865 | PHASE4 | COMPLETED | A Study of Memantine Hydrochloride (Namenda®) for Cognitive and Behavioral Impairment in Adults With Autism Spectrum Disorders |
| NCT01337700 | PHASE4 | COMPLETED | Milnacipran in Autism and the Functional Locus Coeruleus and Noradrenergic Model of Autism |
| NCT01695200 | PHASE4 | COMPLETED | Omega-3 Fatty Acids in Autism Spectrum Disorders |
| NCT02096952 | PHASE4 | COMPLETED | Methylphenidate ER Liquid Formulation in Adults With ASD and ADHD |
| NCT02235467 | PHASE4 | COMPLETED | Multisite Study: Parental Training Using Video Modelling to Develop Social Skills in Children With Autism |
| NCT02940574 | PHASE4 | COMPLETED | Neural and Behavioral Effects of Oxytocin in Autism Spectrum Disorders |
| NCT03333629 | PHASE4 | COMPLETED | Promoting Positive Outcomes for Individuals With ASD: Linking Early Detection, Treatment, and Long-term Outcomes |
| NCT03337646 | PHASE4 | COMPLETED | Evaluation of the Effect and Safety of Lisdexamfetamine in Children Aged 6-12 With ADHD and Autism |
| NCT03538431 | PHASE4 | COMPLETED | Improving Driving in Young People With Autism Spectrum Disorders |
| NCT03757585 | PHASE4 | COMPLETED | Natural Treatments for the Management of Emotional Dysregulation in Youth With Non-verbal Learning Disability (NVLD) and/or Autism Spectrum Disorders (ASD) |
| NCT04903353 | PHASE4 | COMPLETED | Pragmatic Trial Comparing Weight Gain in Children With Autism Taking Risperidone Versus Aripiprazole |
| NCT05063656 | PHASE4 | COMPLETED | Biomarker-Driven Pharmacological Treatment of Adolescents With Autism Spectrum Disorder With Gabapentin |
| NCT05146245 | PHASE4 | UNKNOWN | Safety and Pharmacokinetics of Antipsychotics in Children 2: Studying TDM in an RCT |
| NCT05916339 | PHASE4 | RECRUITING | AWARE: Management of ADHD in Autism Spectrum Disorder |
| NCT05954052 | PHASE4 | TERMINATED | A Study of Glutathione in Children With Autism Spectrum Disorder |
| NCT06853665 | PHASE4 | RECRUITING | The TEAM Study - Treatment Efficacy for Autism/Attention Using Mixed Amphetamine |
| NCT07054697 | PHASE4 | COMPLETED | Pilot-RCT With Individualized Homeopathic Treatment in the Children With Autism Spectrum Disorder |
| NCT07161804 | PHASE4 | COMPLETED | Pilot RCT Using Homeopathic Medicines in ASD |
| NCT07439042 | PHASE4 | NOT_YET_RECRUITING | Buspirone for Anxiety in Autistic Youth |
| NCT01302964 | PHASE3 | COMPLETED | Mirtazapine Treatment of Anxiety in Children and Adolescents With Pervasive Developmental Disorders |
| NCT01706523 | PHASE3 | TERMINATED | Open Label Extension Study of STX209 (Arbaclofen) in Autism Spectrum Disorders |
| NCT01825798 | PHASE3 | COMPLETED | Treatment of Overweight Induced by Antipsychotic Medication in Young People With Autism Spectrum Disorders (ASD) |
| NCT01972074 | PHASE3 | COMPLETED | Behavioral and Neural Response to Memantine in Adolescents With Autism Spectrum Disorder |
| NCT02985749 | PHASE3 | COMPLETED | A Study of Oxytocin for the Treatment of Social Impairment in Individuals With High Functioning Autism Spectrum Disorder |
| NCT03197922 | PHASE3 | COMPLETED | Treatment of Encopresis in Children With Autism Spectrum Disorders |
| NCT03504917 | PHASE3 | TERMINATED | A Study of Balovaptan in Adults With Autism Spectrum Disorder With a 2-Year Open-Label Extension |
| NCT03553875 | PHASE3 | TERMINATED | Memantine for the Treatment of Social Deficits in Youth With Disorders of Impaired Social Interactions |
| NCT03640156 | PHASE3 | COMPLETED | Modulating Socially Adaptive Mirror System Functioning in Autism by Oxytocin |
| NCT03715153 | PHASE3 | TERMINATED | Efficacy and Safety of Bumetanide Oral Liquid Formulation in Children Aged From 2 to Less Than 7 Years Old With Autism Spectrum Disorder. |
| NCT03715166 | PHASE3 | TERMINATED | Efficacy and Safety of Bumetanide Oral Liquid Formulation in Children and Adolescents Aged From 7 to Less Than 18 Years Old With Autism Spectrum Disorder |
| NCT04233502 | PHASE3 | WITHDRAWN | Efficacy and Safety of Slenyto for Insomnia in Children With ASD |
| NCT04578756 | PHASE3 | COMPLETED | Open-Label, Flexible-dose Study to Evaluate the Long-Term Safety and Tolerability of Cariprazine in the Treatment of Pediatric Participants With Schizophrenia, Bipolar I Disorder, or Autism Spectrum Disorder |
| NCT04623398 | PHASE3 | COMPLETED | Effect of Lithium in Patients With Autism Spectrum Disorder and Phelan-McDermid Syndrome (SHANK3 Haploinsufficiency) |
| NCT04725383 | PHASE3 | TERMINATED | Amitriptyline for Repetitive Behaviors in Autism Spectrum Disorders |
| NCT05212493 | PHASE3 | COMPLETED | The Effects of Medical Cannabis in Children With Autistic Spectrum Disorder |
| NCT05361707 | PHASE3 | UNKNOWN | Evaluating the Effects of Tasimelteon in Individuals With Autism Spectrum Disorder (ASD) and Sleep Disturbances |
| NCT05439616 | PHASE3 | COMPLETED | Study of Cariprazine Oral Capsules or Solution to Assess Adverse Events and Change in Irritability Due to Autism Spectrum Disorder (ASD) in Participants Aged 5-17 Years With ASD |
| NCT06229210 | PHASE3 | RECRUITING | Safety and Tolerability Trial of Lumateperone in Pediatric Patients With Schizophrenia, Bipolar Disorder or Autism Spectrum Disorder |
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.