ZNF589
geneOn this page
Also known as SZF1
Summary
ZNF589 (zinc finger protein 589, HGNC:16747) is a protein-coding gene on chromosome 3p21.31, encoding Zinc finger protein 589 (Q86UQ0). May play a role in hematopoietic stem/progenitor cell differentiation.
Enables DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II. Located in nucleoplasm.
Source: NCBI Gene 51385 — RefSeq curated summary.
At a glance
- Gene–disease (curated): complex neurodevelopmental disorder (Limited, GenCC)
- GWAS associations: 7
- Clinical variants (ClinVar): 54 total
- MANE Select transcript:
NM_016089
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:16747 |
| Approved symbol | ZNF589 |
| Name | zinc finger protein 589 |
| Location | 3p21.31 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | SZF1 |
| Ensembl gene | ENSG00000164048 |
| Ensembl biotype | protein_coding |
| OMIM | 616702 |
| Entrez | 51385 |
Gene structure
Transcript identifiers
Ensembl transcripts: 8 — 5 protein_coding, 2 nonsense_mediated_decay, 1 protein_coding_CDS_not_defined
ENST00000354698, ENST00000412564, ENST00000427617, ENST00000440261, ENST00000448461, ENST00000454212, ENST00000457782, ENST00000929429
RefSeq mRNA: 1 — MANE Select: NM_016089
NM_016089
CCDS: CCDS43085
Canonical transcript exons
ENST00000354698 — 4 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001424309 | 48267915 | 48270990 |
| ENSE00001658729 | 48247625 | 48247677 |
| ENSE00003592808 | 48260813 | 48260939 |
| ENSE00003844129 | 48241104 | 48241214 |
Expression profiles
Bgee: expression breadth ubiquitous, 219 present calls, max score 96.35.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 12.4584 / max 185.4348, expressed in 1695 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 36570 | 8.3893 | 1433 |
| 36569 | 3.1013 | 1184 |
| 36571 | 0.9678 | 457 |
Top tissues by expression
276 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| buccal mucosa cell | CL:0002336 | 96.35 | gold quality |
| spleen | UBERON:0002106 | 87.95 | gold quality |
| granulocyte | CL:0000094 | 87.39 | gold quality |
| cortical plate | UBERON:0005343 | 87.15 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 87.07 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 86.80 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 86.77 | gold quality |
| ganglionic eminence | UBERON:0004023 | 86.64 | gold quality |
| cerebellar cortex | UBERON:0002129 | 86.57 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 86.44 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 86.25 | gold quality |
| thyroid gland | UBERON:0002046 | 85.32 | gold quality |
| ventricular zone | UBERON:0003053 | 85.20 | gold quality |
| monocyte | CL:0000576 | 85.12 | gold quality |
| mononuclear cell | CL:0000842 | 85.09 | gold quality |
| cerebellum | UBERON:0002037 | 84.86 | gold quality |
| leukocyte | CL:0000738 | 84.84 | gold quality |
| prostate gland | UBERON:0002367 | 84.13 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 83.92 | gold quality |
| right ovary | UBERON:0002118 | 83.74 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 83.61 | gold quality |
| left ovary | UBERON:0002119 | 83.22 | gold quality |
| right lung | UBERON:0002167 | 83.10 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 83.05 | gold quality |
| right adrenal gland | UBERON:0001233 | 82.86 | gold quality |
| left uterine tube | UBERON:0001303 | 82.34 | gold quality |
| mucosa of stomach | UBERON:0001199 | 82.18 | gold quality |
| lymph node | UBERON:0000029 | 81.91 | gold quality |
| skin of leg | UBERON:0001511 | 81.90 | gold quality |
| left adrenal gland | UBERON:0001234 | 81.77 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 3.65 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): STAT1
miRNA regulators (miRDB)
84 targeting ZNF589, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-6867-5P | 100.00 | 82.21 | 3464 |
| HSA-MIR-574-5P | 100.00 | 66.01 | 989 |
| HSA-MIR-6833-3P | 100.00 | 70.63 | 3197 |
| HSA-MIR-6873-3P | 100.00 | 71.42 | 2626 |
| HSA-MIR-4768-5P | 100.00 | 69.49 | 2861 |
| HSA-MIR-7110-3P | 100.00 | 73.18 | 2486 |
| HSA-MIR-6870-5P | 99.99 | 68.55 | 2115 |
| HSA-MIR-186-5P | 99.99 | 70.83 | 3707 |
| HSA-MIR-4723-5P | 99.97 | 68.70 | 2034 |
| HSA-MIR-5698 | 99.97 | 68.49 | 2029 |
| HSA-MIR-7111-5P | 99.97 | 68.48 | 2062 |
| HSA-MIR-6845-3P | 99.94 | 66.88 | 1439 |
| HSA-MIR-627-3P | 99.90 | 71.42 | 3316 |
| HSA-MIR-4493 | 99.90 | 66.48 | 977 |
| HSA-MIR-7978 | 99.86 | 66.90 | 856 |
| HSA-MIR-629-3P | 99.85 | 67.99 | 1875 |
| HSA-MIR-765 | 99.84 | 68.24 | 2442 |
| HSA-MIR-4713-5P | 99.78 | 67.80 | 1794 |
| HSA-MIR-11181-3P | 99.75 | 66.38 | 2205 |
| HSA-MIR-1976 | 99.74 | 65.48 | 1127 |
| HSA-MIR-1825 | 99.72 | 68.11 | 1089 |
| HSA-MIR-3059-5P | 99.70 | 69.93 | 2491 |
| HSA-MIR-3202 | 99.66 | 67.70 | 2737 |
| HSA-MIR-4502 | 99.65 | 66.99 | 1021 |
| HSA-MIR-561-3P | 99.64 | 70.90 | 3647 |
| HSA-MIR-298 | 99.63 | 67.56 | 1916 |
| HSA-MIR-3975 | 99.62 | 65.97 | 697 |
| HSA-MIR-6126 | 99.62 | 68.09 | 996 |
| HSA-MIR-6733-3P | 99.54 | 67.80 | 1281 |
| HSA-MIR-199A-5P | 99.51 | 69.71 | 1107 |
Literature-anchored findings (GeneRIF, showing 2)
- The stem cell zinc finger 1 (SZF1)/ZNF589 protein has a human-specific evolutionary nucleotide DNA change and acts as a regulator of cell viability in the hematopoietic system (PMID:26738774)
- A heterochromatin inducing protein differentially recognizes self versus foreign genomes. (PMID:33730092)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| drosophila_melanogaster | CG2712 | FBGN0024975 |
| drosophila_melanogaster | Phs | FBGN0036522 |
| drosophila_melanogaster | CG3281 | FBGN0260741 |
Paralogs (62): ZNF582 (ENSG00000018869), ZNF264 (ENSG00000083844), ZNF343 (ENSG00000088876), ZNF684 (ENSG00000117010), ZNF133 (ENSG00000125846), ZNF557 (ENSG00000130544), ZNF337 (ENSG00000130684), ZNF20 (ENSG00000132010), ZFP37 (ENSG00000136866), ZNF614 (ENSG00000142556), KRBOX4 (ENSG00000147121), ZNF599 (ENSG00000153896), ZNF19 (ENSG00000157429), PRDM9 (ENSG00000164256), ZNF180 (ENSG00000167384), ZNF558 (ENSG00000167785), ZNF35 (ENSG00000169981), ZNF778 (ENSG00000170100), ZNF439 (ENSG00000171291), ZNF440 (ENSG00000171295), ZNF556 (ENSG00000172000), ZNF554 (ENSG00000172006), ZNF596 (ENSG00000172748), ZNF80 (ENSG00000174255), ZNF266 (ENSG00000174652), ZNF25 (ENSG00000175395), ZNF77 (ENSG00000175691), ZNF169 (ENSG00000175787), ZNF404 (ENSG00000176222), ZNF491 (ENSG00000177599), ZNF620 (ENSG00000177842), ZNF619 (ENSG00000177873), ZNF875 (ENSG00000181666), ZNF329 (ENSG00000181894), ZFP90 (ENSG00000184939), ZNF566 (ENSG00000186017), ZNF529 (ENSG00000186020), ZNF749 (ENSG00000186230), ZNF555 (ENSG00000186300), ZNF70 (ENSG00000187792)
Protein
Protein identifiers
Zinc finger protein 589 — Q86UQ0 (reviewed: Q86UQ0)
Alternative names: Stem cell zinc finger protein 1
All UniProt accessions (5): B4DQF9, C9J1J1, C9JGA6, Q86UQ0, F8VZ09
UniProt curated annotations — full annotation on UniProt →
Function. May play a role in hematopoietic stem/progenitor cell differentiation. May play a role as a DNA binding-dependent transcriptional repressor.
Subunit / interactions. Interacts with TRIM28.
Subcellular location. Nucleus.
Tissue specificity. Isoform 2 is widely expressed. Isoform 3 is only expressed in CD34(+) cells.
Domain organisation. The KRAB domain mediates interaction with TRIM28.
Miscellaneous. Probable target of nonsense-mediated mRNA decay. The proposed CDS is dubious. Probable target of nonsense-mediated mRNA decay. The proposed CDS is dubious. Isoform produced through aberrant splice sites.
Similarity. Belongs to the krueppel C2H2-type zinc-finger protein family.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q86UQ0-1 | 1 | yes |
| Q86UQ0-2 | 2, SZF1-2 | |
| Q86UQ0-3 | 3, SZF1-1 |
RefSeq proteins (1): NP_057173* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001909 | KRAB | Domain |
| IPR013087 | Znf_C2H2_type | Domain |
| IPR036051 | KRAB_dom_sf | Homologous_superfamily |
| IPR036236 | Znf_C2H2_sf | Homologous_superfamily |
| IPR048414 | PDRM9-like_Znf-C2H2 | Domain |
Pfam: PF00096, PF01352, PF21225
UniProt features (14 total): zinc finger region 4, splice variant 3, sequence variant 2, chain 1, domain 1, region of interest 1, compositionally biased region 1, modified residue 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q86UQ0-F1 | 54.47 | 0.06 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (1): 190
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-212436 | Generic Transcription Pathway |
MSigDB gene sets: 88 (showing top):
LASTOWSKA_NEUROBLASTOMA_COPY_NUMBER_DN, BENPORATH_ES_1, GAZDA_DIAMOND_BLACKFAN_ANEMIA_ERYTHROID_DN, GOMF_SEQUENCE_SPECIFIC_DNA_BINDING, WANG_CISPLATIN_RESPONSE_AND_XPC_UP, LU_EZH2_TARGETS_UP, GOBP_NEGATIVE_REGULATION_OF_TRANSCRIPTION_BY_RNA_POLYMERASE_II, GOBP_NEGATIVE_REGULATION_OF_NUCLEOBASE_CONTAINING_COMPOUND_METABOLIC_PROCESS, ZWANG_DOWN_BY_2ND_EGF_PULSE, chr3p21, GOMF_DNA_BINDING_TRANSCRIPTION_REPRESSOR_ACTIVITY, GOMF_TRANSCRIPTION_REGULATOR_ACTIVITY, E2F5_TARGET_GENES, KAT5_TARGET_GENES, ZBTB18_TARGET_GENES
GO Biological Process (2): negative regulation of transcription by RNA polymerase II (GO:0000122), regulation of DNA-templated transcription (GO:0006355)
GO Molecular Function (6): RNA polymerase II transcription regulatory region sequence-specific DNA binding (GO:0000977), DNA-binding transcription repressor activity, RNA polymerase II-specific (GO:0001227), zinc ion binding (GO:0008270), DNA binding (GO:0003677), sequence-specific DNA binding (GO:0043565), metal ion binding (GO:0046872)
GO Cellular Component (2): nucleus (GO:0005634), nucleoplasm (GO:0005654)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| RNA Polymerase II Transcription | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| regulation of transcription by RNA polymerase II | 1 |
| transcription by RNA polymerase II | 1 |
| negative regulation of DNA-templated transcription | 1 |
| DNA-templated transcription | 1 |
| regulation of gene expression | 1 |
| regulation of RNA biosynthetic process | 1 |
| transcription cis-regulatory region binding | 1 |
| negative regulation of transcription by RNA polymerase II | 1 |
| RNA polymerase II transcription regulatory region sequence-specific DNA binding | 1 |
| DNA-binding transcription factor activity, RNA polymerase II-specific | 1 |
| DNA-binding transcription repressor activity | 1 |
| transition metal ion binding | 1 |
| nucleic acid binding | 1 |
| DNA binding | 1 |
| cation binding | 1 |
| intracellular membrane-bounded organelle | 1 |
| nuclear lumen | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
394 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ZNF589 | MAN1A1 | P33908 | 432 |
| ZNF589 | DNAJC13 | O75165 | 406 |
| ZNF589 | CLVS1 | Q8IUQ0 | 394 |
| ZNF589 | N4BP2L1 | Q5TBK1 | 392 |
| ZNF589 | C1orf167 | Q5SNV9 | 369 |
| ZNF589 | TMEM92 | Q6UXU6 | 358 |
| ZNF589 | CCT8 | P50990 | 352 |
| ZNF589 | ZNF618 | Q5T7W0 | 348 |
| ZNF589 | FOXI2 | Q6ZQN5 | 348 |
| ZNF589 | C7orf25 | Q9BPX7 | 348 |
| ZNF589 | ERC1 | Q8IUD2 | 337 |
| ZNF589 | VPS13C | Q709C8 | 315 |
| ZNF589 | CDC42BPA | Q5VT25 | 314 |
| ZNF589 | TIGD4 | Q8IY51 | 314 |
| ZNF589 | PTK7 | Q13308 | 313 |
IntAct
6 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| RBPJ | NOTCH1 | psi-mi:“MI:0914”(association) | 0.910 |
| POLR2E | POLR3A | psi-mi:“MI:0914”(association) | 0.870 |
| TRIM28 | ZNF316 | psi-mi:“MI:0914”(association) | 0.530 |
| CBX1 | EXOC5 | psi-mi:“MI:0914”(association) | 0.350 |
| MFAP4 | PEX1 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (25): ZNF589 (Affinity Capture-MS), ZNF589 (Affinity Capture-MS), ZNF589 (Affinity Capture-MS), ZNF589 (Affinity Capture-MS), ZNF589 (Affinity Capture-MS), ZNF589 (Affinity Capture-MS), ZNF589 (Affinity Capture-RNA), ZNF589 (Affinity Capture-MS), ZNF589 (Affinity Capture-MS), ZNF589 (Affinity Capture-MS), ZNF589 (Affinity Capture-MS), ZNF589 (Affinity Capture-RNA), ZNF589 (Affinity Capture-MS), ZNF589 (Affinity Capture-MS), ZNF589 (Affinity Capture-MS)
ESM2 similar proteins: A0JPK3, A1YFX5, A2RQG7, A7KBS4, F4JUI3, G3X9G7, O49498, P03131, P04605, P04614, P05909, P0C1K0, P11332, P12453, P18098, P24109, P35965, P98182, Q09424, Q0VCB0, Q19203, Q2YDJ5, Q3UZB0, Q567C6, Q5BI31, Q5EXX3, Q5M948, Q62396, Q6AXY9, Q6PB60, Q6PI77, Q71HP2, Q74124, Q7JUR5, Q7Z142, Q7Z2Y5, Q80YD3, Q86UQ0, Q8C0P7, Q8C6P8
Diamond homologs: A0A163UT06, A2AGX3, A6QPM3, B1AUS7, E9Q3T6, O60224, O75626, P0C6Y7, P52736, Q13029, Q16384, Q16385, Q3UZD5, Q5R5M1, Q60636, Q63755, Q6P2A1, Q6PGE4, Q7RTT6, Q80V63, Q86UQ0, Q8BZ97, Q8TD17, Q96EQ9, Q99909, Q9GZV8, Q9NQV5, Q9NQV7, Q9NQV8, Q9NQW5, Q9NQX0, Q9QZP2, Q9UDV7, Q9UKN5, Q9ULD5, A2VDP4, A3KN32, A3KN36, A6NM28, A6QLU5
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
54 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 44 |
| Likely benign | 3 |
| Benign | 3 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1437 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 3:48247676:TGGTG:T | donor_loss | 1.0000 |
| 3:48247678:G:A | donor_loss | 1.0000 |
| 3:48247679:T:G | donor_loss | 1.0000 |
| 3:48260938:GG:G | donor_gain | 1.0000 |
| 3:48260939:GG:G | donor_gain | 1.0000 |
| 3:48260940:G:GA | donor_loss | 1.0000 |
| 3:48260940:G:GG | donor_gain | 1.0000 |
| 3:48260941:T:A | donor_loss | 1.0000 |
| 3:48295070:CTCA:C | donor_loss | 1.0000 |
| 3:48295071:TCA:T | donor_loss | 1.0000 |
| 3:48295073:A:AC | donor_gain | 1.0000 |
| 3:48295073:A:T | donor_loss | 1.0000 |
| 3:48295073:AC:A | donor_gain | 1.0000 |
| 3:48295074:C:CA | donor_loss | 1.0000 |
| 3:48295074:C:CC | donor_gain | 1.0000 |
| 3:48295074:CC:C | donor_gain | 1.0000 |
| 3:48295074:CCCGA:C | donor_gain | 1.0000 |
| 3:48295231:GCCCG:G | acceptor_gain | 1.0000 |
| 3:48295232:CCCG:C | acceptor_gain | 1.0000 |
| 3:48295232:CCCGC:C | acceptor_gain | 1.0000 |
| 3:48295233:CCG:C | acceptor_gain | 1.0000 |
| 3:48295233:CCGC:C | acceptor_gain | 1.0000 |
| 3:48295234:CG:C | acceptor_gain | 1.0000 |
| 3:48295234:CGC:C | acceptor_gain | 1.0000 |
| 3:48295236:C:CC | acceptor_gain | 1.0000 |
| 3:48295236:CT:C | acceptor_loss | 1.0000 |
| 3:48295238:G:C | acceptor_gain | 1.0000 |
| 3:48295238:G:GC | acceptor_gain | 1.0000 |
| 3:48295243:C:CT | acceptor_gain | 1.0000 |
| 3:48295244:A:T | acceptor_gain | 1.0000 |
AlphaMissense
2381 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 3:48268544:T:C | F285L | 0.999 |
| 3:48268546:T:A | F285L | 0.999 |
| 3:48268546:T:G | F285L | 0.999 |
| 3:48268460:T:C | F257L | 0.998 |
| 3:48268462:T:A | F257L | 0.998 |
| 3:48268462:T:G | F257L | 0.998 |
| 3:48268628:T:C | F313L | 0.998 |
| 3:48268630:T:A | F313L | 0.998 |
| 3:48268630:T:G | F313L | 0.998 |
| 3:48268712:T:C | F341L | 0.998 |
| 3:48268714:T:A | F341L | 0.998 |
| 3:48268714:T:G | F341L | 0.998 |
| 3:48268545:T:C | F285S | 0.996 |
| 3:48268629:T:C | F313S | 0.995 |
| 3:48268713:T:C | F341S | 0.995 |
| 3:48268573:C:A | H294Q | 0.994 |
| 3:48268573:C:G | H294Q | 0.994 |
| 3:48268461:T:C | F257S | 0.993 |
| 3:48268487:C:G | H266D | 0.993 |
| 3:48268571:C:G | H294D | 0.993 |
| 3:48268731:T:C | L347P | 0.993 |
| 3:48268741:C:A | H350Q | 0.993 |
| 3:48268741:C:G | H350Q | 0.993 |
| 3:48268489:C:A | H266Q | 0.992 |
| 3:48268489:C:G | H266Q | 0.992 |
| 3:48268491:A:C | Q267P | 0.992 |
| 3:48268655:C:G | H322D | 0.992 |
| 3:48268657:T:A | H322Q | 0.992 |
| 3:48268657:T:G | H322Q | 0.992 |
| 3:48268659:A:C | Q323P | 0.992 |
dbSNP variants (sampled 300 via entrez): RS1000096079 (3:48263703 G>T), RS1000116200 (3:48258818 G>A,C), RS1000166995 (3:48252624 T>TC), RS1000252678 (3:48258266 C>T), RS1000321688 (3:48260490 C>T), RS1000373611 (3:48245618 G>A), RS1000419319 (3:48268163 A>G,T), RS1000437948 (3:48252005 C>T), RS1000454968 (3:48260379 A>G), RS1000536478 (3:48265027 G>A,T), RS1000588375 (3:48259931 A>T), RS1000682493 (3:48253716 A>C), RS1000707299 (3:48246909 C>T), RS1000746465 (3:48252353 G>A), RS1000945818 (3:48247125 C>T)
Disease associations
OMIM: gene MIM:616702 | disease phenotypes:
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| complex neurodevelopmental disorder | Limited | Autosomal recessive |
Mondo (1): complex neurodevelopmental disorder (MONDO:0100038)
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
7 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST006231_20 | Mean arterial pressure | 1.000000e-06 |
| GCST006941_60 | Irritable mood | 1.000000e-09 |
| GCST010698_80 | Subcortical volume (min-P) | 3.000000e-24 |
| GCST010699_110 | Brain morphology (min-P) | 4.000000e-08 |
| GCST010701_52 | Cortical surface area (MOSTest) | 1.000000e-16 |
| GCST010702_36 | Subcortical volume (MOSTest) | 1.000000e-10 |
| GCST010703_262 | Brain morphology (MOSTest) | 2.000000e-13 |
EFO canonical traits (3, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0006340 | mean arterial pressure |
| EFO:0009594 | irritability measurement |
| EFO:0004346 | neuroimaging measurement |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
49 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| entinostat | increases expression, affects cotreatment | 2 |
| Air Pollutants | affects cotreatment, decreases expression, increases abundance, affects expression | 2 |
| Cisplatin | affects cotreatment, increases expression, decreases expression | 2 |
| Ozone | affects cotreatment, decreases expression, increases abundance, affects expression | 2 |
| Phenylmercuric Acetate | affects cotreatment, decreases expression | 2 |
| FR900359 | increases phosphorylation | 1 |
| methylmercuric chloride | decreases expression | 1 |
| alpha-pinene | affects cotreatment, decreases expression, increases abundance | 1 |
| geraniol | increases expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | decreases expression | 1 |
| sodium arsenite | decreases expression | 1 |
| methacrylaldehyde | affects cotreatment, decreases expression, increases abundance | 1 |
| S-(1,2-dichlorovinyl)cysteine | affects response to substance, increases expression | 1 |
| azoxystrobin | decreases expression | 1 |
| deguelin | decreases expression | 1 |
| 4-chloro-N-((4-(1,1-dimethylethyl)phenyl)methyl)-3-ethyl-1-methyl-1H-pyrazole-5-carboxamide | decreases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | decreases expression, affects cotreatment, increases expression | 1 |
| dorsomorphin | decreases expression, affects cotreatment, increases expression | 1 |
| bisphenol S | affects cotreatment, decreases expression | 1 |
| jinfukang | increases expression, affects cotreatment | 1 |
| Vorinostat | increases expression | 1 |
| Leflunomide | decreases expression | 1 |
| Acrolein | affects cotreatment, decreases expression, increases abundance | 1 |
| Air Pollutants, Occupational | affects expression, increases abundance, increases expression | 1 |
| Antimycin A | decreases expression | 1 |
| Vehicle Emissions | increases abundance, increases expression | 1 |
| Benzo(a)pyrene | decreases expression | 1 |
| Curcumin | decreases expression | 1 |
| Dexamethasone | affects cotreatment, decreases expression | 1 |
| Doxorubicin | affects expression | 1 |
Cellosaurus cell lines
3 cell lines: 3 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_HA05 | K562 eGFP-ZNF589 | Cancer cell line | Female |
| CVCL_TZ40 | HAP1 ZNF589 (-) 1 | Cancer cell line | Male |
| CVCL_TZ41 | HAP1 ZNF589 (-) 2 | Cancer cell line | Male |
Clinical trials (associated diseases)
2 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT06310681 | Not specified | COMPLETED | Pilot Testing of a Co-adapted Group Programme for Parents/Carers of Children With Complex Neurodisability |
| NCT07303049 | Not specified | NOT_YET_RECRUITING | Cognitive Benefit of Intensive Rehabilitation Using Rhythmic Music Training in Children With Complex Neurodevelopmental Disorder |
Related Atlas pages
- Associated diseases: complex neurodevelopmental disorder
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): complex neurodevelopmental disorder