ZNF652
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Also known as KIAA0924
Summary
ZNF652 (zinc finger protein 652, HGNC:29147) is a protein-coding gene on chromosome 17q21.32, encoding Zinc finger protein 652 (Q9Y2D9). DNA-binding transcription repressor that acts together with CBFA2T2 to repress expression of target genes, such as TCF12.
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.
Source: NCBI Gene 22834 — RefSeq curated summary.
At a glance
- GWAS associations: 60
- Clinical variants (ClinVar): 87 total
- MANE Select transcript:
NM_001145365
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:29147 |
| Approved symbol | ZNF652 |
| Name | zinc finger protein 652 |
| Location | 17q21.32 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | KIAA0924 |
| Ensembl gene | ENSG00000198740 |
| Ensembl biotype | protein_coding |
| OMIM | 613907 |
| Entrez | 22834 |
Gene structure
Transcript identifiers
Ensembl transcripts: 16 — 14 protein_coding, 1 nonsense_mediated_decay, 1 protein_coding_CDS_not_defined
ENST00000362063, ENST00000430262, ENST00000508237, ENST00000513488, ENST00000899840, ENST00000899841, ENST00000899842, ENST00000899843, ENST00000899844, ENST00000923162, ENST00000923163, ENST00000949717, ENST00000949718, ENST00000949719, ENST00000949720, ENST00000949721
RefSeq mRNA: 2 — MANE Select: NM_001145365
NM_001145365, NM_014897
CCDS: CCDS32677
Canonical transcript exons
ENST00000430262 — 6 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000736266 | 49312698 | 49312845 |
| ENSE00001137248 | 49316826 | 49317983 |
| ENSE00001600373 | 49361909 | 49362250 |
| ENSE00001623620 | 49311312 | 49311456 |
| ENSE00001770080 | 49311927 | 49312042 |
| ENSE00001792354 | 49289206 | 49298924 |
Expression profiles
Bgee: expression breadth ubiquitous, 284 present calls, max score 96.10.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 16.2833 / max 238.1247, expressed in 1758 samples.
FANTOM5 promoters (5 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 166800 | 9.9192 | 1650 |
| 166801 | 5.3931 | 1507 |
| 166799 | 0.8314 | 527 |
| 166797 | 0.1180 | 36 |
| 166798 | 0.0216 | 5 |
Top tissues by expression
295 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| medial globus pallidus | UBERON:0002477 | 96.10 | gold quality |
| globus pallidus | UBERON:0001875 | 95.35 | gold quality |
| inferior vagus X ganglion | UBERON:0005363 | 94.29 | gold quality |
| nipple | UBERON:0002030 | 94.09 | gold quality |
| cardia of stomach | UBERON:0001162 | 92.70 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 92.32 | gold quality |
| subthalamic nucleus | UBERON:0001906 | 92.11 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 91.96 | gold quality |
| pylorus | UBERON:0001166 | 91.87 | gold quality |
| skin of hip | UBERON:0001554 | 91.76 | gold quality |
| ventral tegmental area | UBERON:0002691 | 91.73 | gold quality |
| upper leg skin | UBERON:0004262 | 91.73 | gold quality |
| superior vestibular nucleus | UBERON:0007227 | 91.66 | gold quality |
| spinal cord | UBERON:0002240 | 91.27 | gold quality |
| adult organism | UBERON:0007023 | 91.21 | gold quality |
| superior surface of tongue | UBERON:0007371 | 91.04 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 90.73 | gold quality |
| penis | UBERON:0000989 | 90.60 | gold quality |
| saphenous vein | UBERON:0007318 | 90.58 | gold quality |
| cranial nerve II | UBERON:0000941 | 90.25 | gold quality |
| renal medulla | UBERON:0000362 | 90.24 | gold quality |
| pigmented layer of retina | UBERON:0001782 | 90.20 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 89.95 | gold quality |
| medulla oblongata | UBERON:0001896 | 89.91 | gold quality |
| pons | UBERON:0000988 | 89.86 | gold quality |
| fundus of stomach | UBERON:0001160 | 89.71 | gold quality |
| lateral globus pallidus | UBERON:0002476 | 89.56 | gold quality |
| skin of leg | UBERON:0001511 | 89.51 | gold quality |
| parotid gland | UBERON:0001831 | 89.38 | gold quality |
| seminal vesicle | UBERON:0000998 | 89.33 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-6379 | no | 562.74 |
| E-MTAB-6142 | no | 60.93 |
| E-ANND-3 | no | 8.10 |
Regulation
Is transcription factor: yes
Downstream targets (CollecTRI)
1 targets.
| Target | Regulation |
|---|---|
| TCF12 |
JASPAR motifs
| Motif | Name | Family |
|---|---|---|
| MA1657.1 | ZNF652 | More than 3 adjacent zinc fingers |
| MA1657.2 | ZNF652 | More than 3 adjacent zinc fingers |
JASPAR matrix evidence (PMIDs): PMID:23332764
Upstream regulators (CollecTRI, top): CBFA2T3
miRNA regulators (miRDB)
413 targeting ZNF652, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-LET-7A-3P | 100.00 | 74.03 | 3932 |
| HSA-LET-7B-3P | 100.00 | 74.08 | 3913 |
| HSA-LET-7F-1-3P | 100.00 | 74.02 | 3928 |
| HSA-MIR-98-3P | 100.00 | 74.08 | 3907 |
| HSA-MIR-340-5P | 100.00 | 72.50 | 4437 |
| HSA-MIR-4510 | 100.00 | 66.60 | 2050 |
| HSA-MIR-5692B | 100.00 | 71.32 | 2622 |
| HSA-MIR-5692C | 100.00 | 71.32 | 2622 |
| HSA-MIR-200B-3P | 100.00 | 73.31 | 2693 |
| HSA-MIR-200C-3P | 100.00 | 73.35 | 2685 |
| HSA-MIR-429 | 100.00 | 73.44 | 2698 |
| HSA-MIR-6127 | 100.00 | 66.76 | 2188 |
| HSA-MIR-6129 | 100.00 | 66.46 | 2080 |
| HSA-MIR-6130 | 100.00 | 66.69 | 2012 |
| HSA-MIR-6133 | 100.00 | 66.48 | 2064 |
| HSA-MIR-518D-5P | 100.00 | 67.51 | 979 |
| HSA-MIR-518F-5P | 100.00 | 67.51 | 979 |
| HSA-MIR-520C-5P | 100.00 | 67.51 | 979 |
| HSA-MIR-526A-5P | 100.00 | 67.51 | 979 |
| HSA-MIR-4668-3P | 100.00 | 68.74 | 2635 |
| HSA-MIR-6758-5P | 100.00 | 66.21 | 1470 |
| HSA-MIR-6833-3P | 100.00 | 70.63 | 3197 |
| HSA-MIR-6856-5P | 100.00 | 65.47 | 1298 |
| HSA-MIR-4768-5P | 100.00 | 69.49 | 2861 |
Literature-anchored findings (GeneRIF, showing 7)
- CBFA2T3 interacts with ZNF652 to repress HEB expression, and in addition CBFA2T3 interacts with the HEB protein to inhibit its activator function. (PMID:18456661)
- High levels of expression of both the androgen receptor and ZNF652 in clinically organ-defined prostate cancer are associated with a statistically increased risk of relapse (PMID:20204290)
- variation in FGF5 and ZNF652 gene upstream regions with altered susceptibility to hypertension in Han Chinese (PMID:20542020)
- De novo motif scanning of the ZNF652 binding sites identified a novel ZNF652 recognition motif that closely resembles the previously characterised in vitro binding site, being a 10 nucleotide core of that 13 nucleotide sequence. (PMID:21678463)
- Genetic association studies identify a novel variant in ZNF652 gene suggesting its role in prostate cancer. (PMID:25335771)
- Circular RNA circVRK1 suppresses the proliferation, migration and invasion of osteosarcoma cells by regulating zinc finger protein ZNF652 expression via microRNA miR-337-3p. (PMID:34424826)
- ZNF652-Induced circRHOT1 Promotes SMAD5 Expression to Modulate Tumorigenic Properties and Nature Killer Cell-Mediated Toxicity in Bladder Cancer via Targeting miR-3666. (PMID:34926705)
Cross-species orthologs
6 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | znf652 | ENSDARG00000062302 |
| mus_musculus | Zfp652 | ENSMUSG00000075595 |
| rattus_norvegicus | Zfp652 | ENSRNOG00000017001 |
| drosophila_melanogaster | dwg | FBGN0000520 |
| drosophila_melanogaster | CG6654 | FBGN0038301 |
| caenorhabditis_elegans | WBGENE00003933 |
Paralogs (6): ZNF324 (ENSG00000083812), ZBTB47 (ENSG00000114853), GTF3A (ENSG00000122034), ZUP1 (ENSG00000153975), ZNF513 (ENSG00000163795), ZNF324B (ENSG00000249471)
Protein
Protein identifiers
Zinc finger protein 652 — Q9Y2D9 (reviewed: Q9Y2D9)
All UniProt accessions (2): Q9Y2D9, D6RF85
UniProt curated annotations — full annotation on UniProt →
Function. DNA-binding transcription repressor that acts together with CBFA2T2 to repress expression of target genes, such as TCF12. Specifically binds the DNA consensus sequence 5’-CGAAAGGGTTAAT-3'.
Subunit / interactions. Interacts with CBFA2T3. Interacts with TCF12; inhibiting TCF12 transcription factor activity. Interacts with Zincore complex components QRICH1 and SEPHS1; probably stabilizing ZNF652 at DNA-binding sites across the genome.
Subcellular location. Nucleus.
Tissue specificity. Widely expressed with higher expression in breast, prostate, vulva and pancreas.
Similarity. Belongs to the krueppel C2H2-type zinc-finger protein family.
RefSeq proteins (2): NP_001138837, NP_055712 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR013087 | Znf_C2H2_type | Domain |
| IPR036236 | Znf_C2H2_sf | Homologous_superfamily |
Pfam: PF00096
UniProt features (24 total): zinc finger region 9, compositionally biased region 6, modified residue 5, region of interest 3, chain 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9Y2D9-F1 | 56.60 | 0.00 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (5): 57, 100, 103, 197, 204
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 228 (showing top):
WANG_RECURRENT_LIVER_CANCER_UP, PATIL_LIVER_CANCER, HUTTMANN_B_CLL_POOR_SURVIVAL_DN, SMID_BREAST_CANCER_LUMINAL_B_UP, TCCAGAG_MIR518C, CCAGGGG_MIR331, NIKOLSKY_BREAST_CANCER_17Q21_Q25_AMPLICON, AGCATTA_MIR155, RODRIGUES_THYROID_CARCINOMA_POORLY_DIFFERENTIATED_DN, LAIHO_COLORECTAL_CANCER_SERRATED_DN, CAGCTTT_MIR320, KRIGE_RESPONSE_TO_TOSEDOSTAT_24HR_UP, GEORGES_TARGETS_OF_MIR192_AND_MIR215, GCACTTT_MIR175P_MIR20A_MIR106A_MIR106B_MIR20B_MIR519D, MODULE_456
GO Biological Process (2): negative regulation of transcription by RNA polymerase II (GO:0000122), regulation of transcription by RNA polymerase II (GO:0006357)
GO Molecular Function (6): DNA-binding transcription factor activity, RNA polymerase II-specific (GO:0000981), DNA-binding transcription repressor activity, RNA polymerase II-specific (GO:0001227), DNA binding (GO:0003677), zinc ion binding (GO:0008270), protein binding (GO:0005515), metal ion binding (GO:0046872)
GO Cellular Component (1): nucleus (GO:0005634)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| regulation of transcription by RNA polymerase II | 2 |
| transcription by RNA polymerase II | 2 |
| RNA polymerase II transcription regulatory region sequence-specific DNA binding | 2 |
| negative regulation of DNA-templated transcription | 1 |
| regulation of DNA-templated transcription | 1 |
| chromatin | 1 |
| DNA-binding transcription factor activity | 1 |
| negative regulation of transcription by RNA polymerase II | 1 |
| DNA-binding transcription factor activity, RNA polymerase II-specific | 1 |
| DNA-binding transcription repressor activity | 1 |
| nucleic acid binding | 1 |
| transition metal ion binding | 1 |
| binding | 1 |
| cation binding | 1 |
| intracellular membrane-bounded organelle | 1 |
Protein interactions and networks
STRING
896 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ZNF652 | CBFA2T3 | O75081 | 758 |
| ZNF652 | CABCOCO1 | Q8IVU9 | 668 |
| ZNF652 | GUCD1 | Q96NT3 | 603 |
| ZNF652 | PLCD3 | Q8N3E9 | 576 |
| ZNF652 | PLEKHA7 | Q6IQ23 | 447 |
| ZNF652 | ULK4 | Q96C45 | 417 |
| ZNF652 | OR4K15 | Q8NH41 | 403 |
| ZNF652 | SH2B3 | Q9UQQ2 | 403 |
| ZNF652 | NUDT11 | Q96G61 | 380 |
| ZNF652 | ATP2B1 | P20020 | 374 |
| ZNF652 | JAG1 | P78504 | 373 |
| ZNF652 | ULK3 | Q6PHR2 | 370 |
| ZNF652 | CDC7 | O00311 | 368 |
| ZNF652 | SATL1 | Q86VE3 | 362 |
| ZNF652 | MAD2L1 | Q13257 | 360 |
IntAct
9 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CBFA2T3 | ZNF652 | psi-mi:“MI:0915”(physical association) | 0.510 |
| ZNF652 | RUNX1T1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| ZNF652 | CBFA2T2 | psi-mi:“MI:0915”(physical association) | 0.400 |
| ZNF652 | PDIA4 | psi-mi:“MI:0915”(physical association) | 0.400 |
| ESR1 | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| AFG2B | MMP24OS | psi-mi:“MI:0914”(association) | 0.350 |
| ZNF652 | FOS | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (7): ZNF652 (Two-hybrid), ZNF652 (Affinity Capture-MS), ZNF652 (Affinity Capture-MS), ZNF652 (Proximity Label-MS), ZNF652 (Affinity Capture-MS), ZNF652 (Proximity Label-MS), ZNF652 (Affinity Capture-MS)
ESM2 similar proteins: A0JPB4, A1L1J6, A4IFJ6, D3ZUU2, E9Q8T2, G5E8B9, O08954, O15060, O42409, O43623, O57415, O70237, O75626, O95625, P19382, P25932, P36197, P37275, P97469, Q20082, Q2EI20, Q3MHQ4, Q3UH06, Q4VBD9, Q5DU09, Q5R9W9, Q5SVQ8, Q5T0B9, Q5ZLR2, Q60542, Q60636, Q62947, Q64318, Q6DCW1, Q6GNP2, Q6INV8, Q6NRM0, Q7TS63, Q7ZVR6, Q80X44
Diamond homologs: A1L1J6, Q5DU09, Q6GNP2, Q6INV8, Q8BI66, Q8TF50, Q9UFB7, Q9Y2D9, A0JC51, A2ANX9, A6QR00, A7Y7X5, D3ZUU2, O60315, O95863, P28166, P36197, P39956, Q02026, Q02027, Q02085, Q03833, Q22678, Q29RK0, Q4R8S8, Q4VBD9, Q504L7, Q569E7, Q5R4P8, Q5TEC3, Q60542, Q62947, Q642B2, Q64318, Q6GL52, Q6ZN55, Q8BY46, Q99LH4, Q99M85, Q9BWW7
SIGNOR signaling
2 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| CBFA2T3 | “down-regulates activity” | ZNF652 | binding |
| CBFA2T3/ZNF651 | “down-regulates quantity by repression” | ZNF652 | “transcriptional regulation” |
Disease & clinical
Clinical variants and AI predictions
ClinVar
87 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 75 |
| Likely benign | 1 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1715 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 17:49298922:CTC:C | acceptor_gain | 1.0000 |
| 17:49298925:C:CC | acceptor_gain | 1.0000 |
| 17:49311308:TTAC:T | donor_loss | 1.0000 |
| 17:49311309:TA:T | donor_loss | 1.0000 |
| 17:49311310:A:AC | donor_gain | 1.0000 |
| 17:49311310:A:AT | donor_loss | 1.0000 |
| 17:49311311:C:CC | donor_gain | 1.0000 |
| 17:49311452:CAGTT:C | acceptor_gain | 1.0000 |
| 17:49312691:AACTT:A | donor_loss | 1.0000 |
| 17:49312692:ACTTA:A | donor_loss | 1.0000 |
| 17:49312693:CTTA:C | donor_loss | 1.0000 |
| 17:49312694:TTACC:T | donor_loss | 1.0000 |
| 17:49312695:TA:T | donor_loss | 1.0000 |
| 17:49312696:A:AC | donor_gain | 1.0000 |
| 17:49312696:A:T | donor_loss | 1.0000 |
| 17:49312696:AC:A | donor_gain | 1.0000 |
| 17:49312697:C:CA | donor_gain | 1.0000 |
| 17:49312697:C:G | donor_loss | 1.0000 |
| 17:49312697:CC:C | donor_gain | 1.0000 |
| 17:49312697:CCA:C | donor_gain | 1.0000 |
| 17:49312697:CCAA:C | donor_gain | 1.0000 |
| 17:49312841:ACACA:A | acceptor_gain | 1.0000 |
| 17:49312842:CACA:C | acceptor_gain | 1.0000 |
| 17:49312842:CACAC:C | acceptor_gain | 1.0000 |
| 17:49312843:ACA:A | acceptor_gain | 1.0000 |
| 17:49312844:CA:C | acceptor_gain | 1.0000 |
| 17:49312844:CAC:C | acceptor_gain | 1.0000 |
| 17:49312846:C:CC | acceptor_gain | 1.0000 |
| 17:49312846:CTGA:C | acceptor_loss | 1.0000 |
| 17:49312852:A:T | acceptor_gain | 1.0000 |
AlphaMissense
4080 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 17:49298775:G:C | H487D | 1.000 |
| 17:49298783:A:G | L484P | 1.000 |
| 17:49298794:G:C | F480L | 1.000 |
| 17:49298794:G:T | F480L | 1.000 |
| 17:49298796:A:G | F480L | 1.000 |
| 17:49298800:G:C | F478L | 1.000 |
| 17:49298800:G:T | F478L | 1.000 |
| 17:49298801:A:G | F478S | 1.000 |
| 17:49298802:A:G | F478L | 1.000 |
| 17:49298813:C:T | C474Y | 1.000 |
| 17:49298814:A:G | C474R | 1.000 |
| 17:49298822:C:T | C471Y | 1.000 |
| 17:49298823:A:G | C471R | 1.000 |
| 17:49298845:G:C | H463Q | 1.000 |
| 17:49298845:G:T | H463Q | 1.000 |
| 17:49298846:T:C | H463R | 1.000 |
| 17:49298847:G:A | H463Y | 1.000 |
| 17:49298847:G:C | H463D | 1.000 |
| 17:49298847:G:T | H463N | 1.000 |
| 17:49298851:T:A | R461S | 1.000 |
| 17:49298851:T:G | R461S | 1.000 |
| 17:49298855:C:G | R460P | 1.000 |
| 17:49298857:G:C | H459Q | 1.000 |
| 17:49298857:G:T | H459Q | 1.000 |
| 17:49298858:T:C | H459R | 1.000 |
| 17:49298859:G:C | H459D | 1.000 |
| 17:49298859:G:T | H459N | 1.000 |
| 17:49298860:T:A | R458S | 1.000 |
| 17:49298860:T:G | R458S | 1.000 |
| 17:49298884:G:C | F450L | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000019830 (17:49292630 G>A), RS1000045933 (17:49303145 G>T), RS1000074174 (17:49336648 A>C,G), RS1000089625 (17:49294149 T>C), RS1000112474 (17:49293673 A>C,G), RS1000143947 (17:49362162 GGCGGGGCGGGCAGC>G,GGCGGGGCGGGCAGCGCGGGGCGGGCAGC), RS1000165408 (17:49360610 TCGA>T), RS1000197974 (17:49296869 A>G), RS1000231376 (17:49336747 C>T), RS1000270668 (17:49334835 C>A,G,T), RS1000333132 (17:49305491 G>C), RS1000344944 (17:49342686 C>T), RS1000386980 (17:49342958 T>C,G), RS1000429100 (17:49348661 A>G,T), RS1000478496 (17:49328487 G>A,C)
Disease associations
OMIM: gene MIM:613907 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
60 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000394_6 | Diastolic blood pressure | 5.000000e-09 |
| GCST000817_138 | Height | 4.000000e-08 |
| GCST001078_1 | Prostate cancer | 3.000000e-13 |
| GCST001236_27 | Blood pressure | 2.000000e-07 |
| GCST001612_13 | Sex hormone-binding globulin levels | 4.000000e-14 |
| GCST001612_30 | Sex hormone-binding globulin levels | 2.000000e-10 |
| GCST001942_17 | Prostate cancer | 2.000000e-09 |
| GCST004600_146 | Eosinophil percentage of white cells | 5.000000e-13 |
| GCST004606_24 | Eosinophil count | 1.000000e-13 |
| GCST004617_124 | Eosinophil percentage of granulocytes | 1.000000e-11 |
| GCST004623_86 | Neutrophil percentage of granulocytes | 9.000000e-10 |
| GCST004777_55 | Diastolic blood pressure | 1.000000e-08 |
| GCST005038_100 | Allergic disease (asthma, hay fever or eczema) | 1.000000e-15 |
| GCST005195_141 | Coronary artery disease | 2.000000e-15 |
| GCST005196_220 | Coronary artery disease | 3.000000e-16 |
| GCST005212_35 | Asthma | 7.000000e-09 |
| GCST005275_26 | Cancer | 7.000000e-07 |
| GCST005728_1 | Egg allergy (maternal genetic effects) | 4.000000e-07 |
| GCST006020_37 | Diastolic blood pressure | 3.000000e-07 |
| GCST006166_22 | Diastolic blood pressure x alcohol consumption interaction (2df test) | 1.000000e-18 |
| GCST006166_41 | Diastolic blood pressure x alcohol consumption interaction (2df test) | 3.000000e-17 |
| GCST006167_17 | Mean arterial pressure x alcohol consumption interaction (2df test) | 6.000000e-10 |
| GCST006169_14 | Diastolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test) | 2.000000e-09 |
| GCST006169_27 | Diastolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test) | 1.000000e-10 |
| GCST006172_11 | Mean arterial pressure x alcohol consumption (light vs heavy) interaction (2df test) | 5.000000e-09 |
| GCST006258_55 | Diastolic blood pressure | 1.000000e-12 |
| GCST006259_15 | Systolic blood pressure | 7.000000e-08 |
| GCST006412_99 | Intraocular pressure | 8.000000e-08 |
| GCST006434_49 | Systolic blood pressure x alcohol consumption interaction (2df test) | 3.000000e-11 |
| GCST006862_3 | Asthma | 3.000000e-09 |
EFO canonical traits (17, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0006336 | diastolic blood pressure |
| EFO:0006340 | mean arterial pressure |
| EFO:0004696 | sex hormone-binding globulin measurement |
| EFO:0007991 | eosinophil percentage of leukocytes |
| EFO:0004842 | eosinophil count |
| EFO:0007996 | eosinophil percentage of granulocytes |
| EFO:0007994 | neutrophil percentage of granulocytes |
| EFO:0005939 | parental genotype effect measurement |
| EFO:0007018 | egg allergy measurement |
| EFO:0004329 | alcohol drinking |
| EFO:0006335 | systolic blood pressure |
| EFO:0004695 | intraocular pressure measurement |
| EFO:0004341 | body fat distribution |
| EFO:1002011 | adult onset asthma |
| EFO:0004530 | triglyceride measurement |
| EFO:0004346 | neuroimaging measurement |
| EFO:0010701 | mean reticulocyte volume |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB variants
1 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs16948048 | ZNF652 | 0.00 | 0 |
CTD chemical–gene interactions
57 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects expression, decreases expression | 6 |
| Benzo(a)pyrene | affects expression, decreases expression, decreases methylation | 4 |
| Formaldehyde | decreases expression | 2 |
| Phenylmercuric Acetate | decreases expression, affects cotreatment | 2 |
| Quercetin | decreases expression, decreases phosphorylation | 2 |
| Tetrachlorodibenzodioxin | decreases expression | 2 |
| Cyclosporine | decreases expression, increases expression | 2 |
| Aflatoxin B1 | affects expression, decreases expression | 2 |
| Cadmium Chloride | increases expression, decreases expression, increases abundance | 2 |
| aristolochic acid I | decreases expression | 1 |
| FR900359 | increases phosphorylation | 1 |
| bisphenol F | affects cotreatment, decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| 2-butenal | decreases expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | decreases expression | 1 |
| sodium arsenite | decreases expression | 1 |
| butyraldehyde | decreases expression | 1 |
| ochratoxin A | decreases expression | 1 |
| benzo(e)pyrene | increases methylation | 1 |
| beta-methylcholine | affects expression | 1 |
| pentanal | decreases expression | 1 |
| gadodiamide | increases expression | 1 |
| 2-palmitoylglycerol | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | decreases expression, affects cotreatment | 1 |
| erucylphospho-N,N,N-trimethylpropylammonium | increases expression | 1 |
| ICG 001 | increases expression | 1 |
| abrine | decreases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| bisphenol S | affects cotreatment, decreases expression | 1 |
| jinfukang | decreases expression | 1 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): atopic eczema, cancer