ZNF655
gene geneOn this page
Also known as VIK-1VIK
Summary
ZNF655 (zinc finger protein 655, HGNC:30899) is a protein-coding gene on chromosome 7q22.1, encoding Zinc finger protein 655 (Q8N720). Probable transcription factor.
This gene encodes a zinc finger protein. The zinc finger proteins are involved in DNA binding and protein-protein interactions. Multiple alternatively spliced transcript variants encoding distinct isoforms have been found for this gene.
Source: NCBI Gene 79027 — RefSeq curated summary.
At a glance
- GWAS associations: 3
- Clinical variants (ClinVar): 86 total
- MANE Select transcript:
NM_138494
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:30899 |
| Approved symbol | ZNF655 |
| Name | zinc finger protein 655 |
| Location | 7q22.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | VIK-1, VIK |
| Ensembl gene | ENSG00000197343 |
| Ensembl biotype | protein_coding |
| OMIM | 617891 |
| Entrez | 79027 |
Gene structure
Transcript identifiers
Ensembl transcripts: 32 — 22 protein_coding, 5 retained_intron, 4 nonsense_mediated_decay, 1 protein_coding_CDS_not_defined
ENST00000252713, ENST00000320583, ENST00000357864, ENST00000394163, ENST00000412636, ENST00000416144, ENST00000419215, ENST00000422164, ENST00000422422, ENST00000422647, ENST00000423973, ENST00000424881, ENST00000425063, ENST00000427931, ENST00000440391, ENST00000449244, ENST00000452314, ENST00000454654, ENST00000467680, ENST00000488751, ENST00000489320, ENST00000493277, ENST00000493947, ENST00000494357, ENST00000626122, ENST00000858641, ENST00000858642, ENST00000858643, ENST00000858644, ENST00000858645, ENST00000955592, ENST00000955593
RefSeq mRNA: 11 — MANE Select: NM_138494
NM_001009958, NM_001009960, NM_001083956, NM_001085366, NM_001085367, NM_001085368, NM_001363332, NM_001363333, NM_001363334, NM_024061, NM_138494
CCDS: CCDS34695, CCDS47655, CCDS5669, CCDS5670
Canonical transcript exons
ENST00000252713 — 3 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001834689 | 99558642 | 99558787 |
| ENSE00003643295 | 99572245 | 99576453 |
| ENSE00003706428 | 99560533 | 99560695 |
Expression profiles
Bgee: expression breadth ubiquitous, 260 present calls, max score 97.28.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 38.0120 / max 426.5401, expressed in 1716 samples.
FANTOM5 promoters (7 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 79887 | 22.4952 | 1667 |
| 79890 | 5.6681 | 1548 |
| 79886 | 2.7573 | 1309 |
| 79888 | 2.6517 | 1273 |
| 79885 | 2.2670 | 1100 |
| 79889 | 1.7938 | 825 |
| 79884 | 0.3790 | 167 |
Top tissues by expression
260 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| ileal mucosa | UBERON:0000331 | 97.28 | gold quality |
| colonic epithelium | UBERON:0000397 | 97.08 | gold quality |
| upper arm skin | UBERON:0004263 | 96.77 | gold quality |
| upper leg skin | UBERON:0004262 | 96.55 | gold quality |
| body of pancreas | UBERON:0001150 | 96.30 | gold quality |
| mucosa of stomach | UBERON:0001199 | 96.25 | gold quality |
| kidney epithelium | UBERON:0004819 | 96.09 | gold quality |
| cardiac muscle of right atrium | UBERON:0003379 | 95.91 | gold quality |
| thymus | UBERON:0002370 | 95.72 | gold quality |
| cartilage tissue | UBERON:0002418 | 95.62 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 95.43 | gold quality |
| lower esophagus | UBERON:0013473 | 95.43 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 95.43 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 95.31 | gold quality |
| right lung | UBERON:0002167 | 95.22 | gold quality |
| vermiform appendix | UBERON:0001154 | 95.16 | gold quality |
| esophagus | UBERON:0001043 | 95.14 | gold quality |
| tibialis anterior | UBERON:0001385 | 95.05 | gold quality |
| granulocyte | CL:0000094 | 95.04 | gold quality |
| body of stomach | UBERON:0001161 | 95.04 | gold quality |
| transverse colon | UBERON:0001157 | 95.03 | gold quality |
| urinary bladder | UBERON:0001255 | 95.03 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 95.03 | gold quality |
| monocyte | CL:0000576 | 95.00 | gold quality |
| small intestine | UBERON:0002108 | 94.99 | gold quality |
| leukocyte | CL:0000738 | 94.97 | gold quality |
| skin of hip | UBERON:0001554 | 94.94 | gold quality |
| esophagus mucosa | UBERON:0002469 | 94.93 | gold quality |
| seminal vesicle | UBERON:0000998 | 94.92 | gold quality |
| minor salivary gland | UBERON:0001830 | 94.91 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 9.81 |
| E-MTAB-7249 | no | 353.30 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): STAT1
miRNA regulators (miRDB)
134 targeting ZNF655, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-6867-5P | 100.00 | 82.21 | 3464 |
| HSA-MIR-6833-3P | 100.00 | 70.63 | 3197 |
| HSA-MIR-4768-5P | 100.00 | 69.49 | 2861 |
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-6873-3P | 100.00 | 71.42 | 2626 |
| HSA-MIR-4262 | 100.00 | 73.26 | 3931 |
| HSA-MIR-3064-3P | 100.00 | 70.09 | 1254 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-181A-5P | 99.99 | 72.96 | 2995 |
| HSA-MIR-181B-5P | 99.99 | 72.97 | 2996 |
| HSA-MIR-181C-5P | 99.99 | 72.95 | 2996 |
| HSA-MIR-181D-5P | 99.99 | 73.04 | 2997 |
| HSA-MIR-5696 | 99.98 | 72.36 | 4487 |
| HSA-MIR-548N | 99.98 | 71.94 | 4170 |
| HSA-MIR-8075 | 99.97 | 67.20 | 962 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
| HSA-MIR-23A-3P | 99.95 | 74.24 | 3163 |
| HSA-MIR-23B-3P | 99.95 | 74.24 | 3163 |
| HSA-MIR-23C | 99.95 | 73.92 | 3192 |
| HSA-MIR-548AB | 99.95 | 71.31 | 3488 |
| HSA-MIR-559 | 99.95 | 72.28 | 3609 |
| HSA-MIR-141-3P | 99.94 | 72.79 | 2421 |
| HSA-MIR-200A-3P | 99.94 | 72.68 | 2420 |
| HSA-MIR-548A-5P | 99.94 | 71.27 | 3482 |
| HSA-MIR-548AD-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548AE-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548AK | 99.94 | 71.24 | 3488 |
| HSA-MIR-548AM-5P | 99.94 | 71.24 | 3488 |
| HSA-MIR-548AP-5P | 99.94 | 71.14 | 3489 |
| HSA-MIR-548AQ-5P | 99.94 | 71.34 | 3426 |
Literature-anchored findings (GeneRIF, showing 2)
- ZNF655 is involved in development and progression of non-small-cell lung cancer. (PMID:34144060)
- ZNF655 promotes the progression of hepatocellular carcinoma through PSMB8. (PMID:37272200)
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Zfp655 | ENSMUSG00000007812 |
| rattus_norvegicus | Zfp655 | ENSRNOG00000060129 |
Paralogs (176): ZNF195 (ENSG00000005801), ZNF112 (ENSG00000062370), ZNF275 (ENSG00000063587), ZNF37A (ENSG00000075407), ZNF510 (ENSG00000081386), ZNF506 (ENSG00000081665), ZNF268 (ENSG00000090612), MZF1 (ENSG00000099326), ZNF629 (ENSG00000102870), ZNF175 (ENSG00000105497), ZNF85 (ENSG00000105750), ZFP30 (ENSG00000120784), ZNF45 (ENSG00000124459), ZNF391 (ENSG00000124613), ZNF436 (ENSG00000125945), ZNF484 (ENSG00000127081), ZNF835 (ENSG00000127903), ZNF780B (ENSG00000128000), ZSCAN10 (ENSG00000130182), ZNF317 (ENSG00000130803), ZNF331 (ENSG00000130844), ZNF227 (ENSG00000131115), ZNF141 (ENSG00000131127), ZNF132 (ENSG00000131849), ZNF189 (ENSG00000136870), ZIM3 (ENSG00000141946), ZFP14 (ENSG00000142065), ZNF514 (ENSG00000144026), ZNF300 (ENSG00000145908), RBAK (ENSG00000146587), ZNF157 (ENSG00000147117), ZNF182 (ENSG00000147118), ZNF41 (ENSG00000147124), ZNF7 (ENSG00000147789), ZNF117 (ENSG00000152926), ZNF221 (ENSG00000159905), ZNF235 (ENSG00000159917), ZNF714 (ENSG00000160352), ZNF577 (ENSG00000161551), ZNF12 (ENSG00000164631)
Protein
Protein identifiers
Zinc finger protein 655 — Q8N720 (reviewed: Q8N720)
Alternative names: Vav-interacting Krueppel-like protein
All UniProt accessions (11): C9IYG2, C9J0V9, C9J9R2, C9JNK1, C9JS03, C9JUB9, Q8N720, F8WCS2, F8WDU5, F8WE52, F8WEB1
UniProt curated annotations — full annotation on UniProt →
Function. Probable transcription factor.
Subunit / interactions. Interacts with VAV1 and CDK4. Interacts with INTS13; promoting association with the integrator complex.
Subcellular location. Nucleus.
Similarity. Belongs to the krueppel C2H2-type zinc-finger protein family.
Isoforms (4)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q8N720-1 | 1 | yes |
| Q8N720-2 | 2 | |
| Q8N720-3 | 3 | |
| Q8N720-4 | 4 |
RefSeq proteins (11): NP_001009958, NP_001009960, NP_001077425, NP_001078835, NP_001078836, NP_001078837, NP_001350261, NP_001350262, NP_001350263, NP_076966, NP_612503* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR013087 | Znf_C2H2_type | Domain |
| IPR036236 | Znf_C2H2_sf | Homologous_superfamily |
| IPR050826 | Krueppel_C2H2_ZnFinger | Family |
Pfam: PF00096
UniProt features (29 total): mutagenesis site 7, zinc finger region 6, splice variant 5, cross-link 3, helix 2, chain 1, sequence variant 1, sequence conflict 1, modified residue 1, region of interest 1, compositionally biased region 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 8PK6 | X-RAY DIFFRACTION | 3.21 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q8N720-F1 | 54.05 | 0.00 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (4): 190, 201, 60, 77
Mutagenesis-validated functional residues (7):
| Position | Phenotype |
|---|---|
| 102–103 | decreased interaction with ints13 component of the integrator complex. |
| 102 | abolished interaction with ints13 component of the integrator complex. |
| 106–107 | decreased interaction with ints13 component of the integrator complex. |
| 106 | abolished interaction with ints13 component of the integrator complex. |
| 108 | does not affect interaction with ints13 component of the integrator complex. |
| 113 | abolished interaction with ints13 component of the integrator complex. |
| 152–153 | does not affect interaction with ints13 component of the integrator complex. |
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-212436 | Generic Transcription Pathway |
MSigDB gene sets: 182 (showing top):
GSE37336_LY6C_POS_VS_NEG_NAIVE_CD4_TCELL_UP, GSE45365_NK_CELL_VS_BCELL_UP, RODRIGUES_THYROID_CARCINOMA_ANAPLASTIC_UP, ACTACCT_MIR196A_MIR196B, GGTGTGT_MIR329, GCM_ZNF198, GOBP_CELL_CYCLE_PHASE_TRANSITION, LINDGREN_BLADDER_CANCER_CLUSTER_3_DN, AGTCTTA_MIR499, VERNELL_RETINOBLASTOMA_PATHWAY_DN, GOBP_NEGATIVE_REGULATION_OF_CELL_CYCLE_PROCESS, MODULE_239, GOBP_NEGATIVE_REGULATION_OF_CELL_CYCLE, GOBP_REGULATION_OF_CELL_CYCLE, GOBP_REGULATION_OF_CELL_CYCLE_G1_S_PHASE_TRANSITION
GO Biological Process (3): regulation of transcription by RNA polymerase II (GO:0006357), negative regulation of G1/S transition of mitotic cell cycle (GO:2000134), regulation of DNA-templated transcription (GO:0006355)
GO Molecular Function (6): RNA polymerase II cis-regulatory region sequence-specific DNA binding (GO:0000978), DNA-binding transcription factor activity, RNA polymerase II-specific (GO:0000981), zinc ion binding (GO:0008270), DNA binding (GO:0003677), protein binding (GO:0005515), metal ion binding (GO:0046872)
GO Cellular Component (3): nucleus (GO:0005634), nucleolus (GO:0005730), cytoplasm (GO:0005737)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| RNA Polymerase II Transcription | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| RNA polymerase II transcription regulatory region sequence-specific DNA binding | 2 |
| regulation of DNA-templated transcription | 1 |
| transcription by RNA polymerase II | 1 |
| G1/S transition of mitotic cell cycle | 1 |
| negative regulation of mitotic cell cycle phase transition | 1 |
| negative regulation of cell cycle G1/S phase transition | 1 |
| regulation of G1/S transition of mitotic cell cycle | 1 |
| DNA-templated transcription | 1 |
| regulation of gene expression | 1 |
| regulation of RNA biosynthetic process | 1 |
| cis-regulatory region sequence-specific DNA binding | 1 |
| chromatin | 1 |
| DNA-binding transcription factor activity | 1 |
| regulation of transcription by RNA polymerase II | 1 |
| transition metal ion binding | 1 |
| nucleic acid binding | 1 |
| binding | 1 |
| cation binding | 1 |
| intracellular membrane-bounded organelle | 1 |
| nuclear lumen | 1 |
| intracellular membraneless organelle | 1 |
| intracellular anatomical structure | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
526 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ZNF655 | ANKHD1 | Q8IWZ3 | 475 |
| ZNF655 | VAV1 | P15498 | 461 |
| ZNF655 | GAS2L2 | Q8NHY3 | 358 |
| ZNF655 | FAM222B | Q8WU58 | 341 |
| ZNF655 | STAU1 | O95793 | 325 |
| ZNF655 | TMEM87A | Q8NBN3 | 324 |
| ZNF655 | ABCA7 | Q8IZY2 | 314 |
| ZNF655 | ZNF862 | O60290 | 305 |
| ZNF655 | SORL1 | Q92673 | 302 |
| ZNF655 | UNC5C | O95185 | 302 |
| ZNF655 | C2orf74 | A8MZ97 | 300 |
| ZNF655 | SSC4D | Q8WTU2 | 293 |
| ZNF655 | TREM2 | Q9NZC2 | 293 |
| ZNF655 | OR8G5 | Q8NG78 | 293 |
| ZNF655 | TMEFF2 | Q9UIK5 | 285 |
IntAct
506 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| RINT1 | ZNF655 | psi-mi:“MI:0915”(physical association) | 0.670 |
| CBY2 | ZNF655 | psi-mi:“MI:0915”(physical association) | 0.670 |
| ZNF655 | RINT1 | psi-mi:“MI:0915”(physical association) | 0.670 |
| ZNF655 | CBY2 | psi-mi:“MI:0915”(physical association) | 0.670 |
| ZNF655 | TRAF2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| MED21 | ZNF655 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ZNF655 | KRT40 | psi-mi:“MI:0915”(physical association) | 0.560 |
| MAGEA2B | ZNF655 | psi-mi:“MI:0915”(physical association) | 0.560 |
| KIFC3 | ZNF655 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CARD9 | ZNF655 | psi-mi:“MI:0915”(physical association) | 0.560 |
| KRT40 | ZNF655 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CAPN7 | ZNF655 | psi-mi:“MI:0915”(physical association) | 0.560 |
| USHBP1 | ZNF655 | psi-mi:“MI:0915”(physical association) | 0.560 |
| INTS10 | ZNF655 | psi-mi:“MI:0915”(physical association) | 0.560 |
BioGRID (202): ZNF655 (Two-hybrid), ZNF655 (Two-hybrid), ZNF655 (Two-hybrid), ZNF655 (Two-hybrid), ZNF655 (Two-hybrid), KRT40 (Two-hybrid), SPERT (Two-hybrid), MAGEA2B (Two-hybrid), ZNF655 (Affinity Capture-MS), ZNF655 (Affinity Capture-MS), ZNF655 (Two-hybrid), ZNF655 (Two-hybrid), ZNF655 (Two-hybrid), ZNF655 (Two-hybrid), KRTAP4-12 (Two-hybrid)
ESM2 similar proteins: A1KXM5, A1YFC1, A1YGK6, A2T7F2, A7KBS4, B2RXC5, E1JH25, G3X9G7, O96001, P16531, P18748, P34307, P88825, Q2EI21, Q3URU2, Q3V0C1, Q4V8E9, Q5JRM2, Q5R7U0, Q5RDG2, Q5RE50, Q5REF1, Q5SRN2, Q5SS00, Q5U4C1, Q6H236, Q6P1M9, Q6ZN11, Q810T2, Q8BUY8, Q8N3K9, Q8N660, Q8N720, Q8N859, Q8R2V3, Q920R4, Q921B4, Q923B3, Q95JY5, Q96D09
Diamond homologs: Q8N720, Q9CZP3
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
86 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 74 |
| Likely benign | 6 |
| Benign | 1 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1553 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 7:99560531:A:AG | acceptor_gain | 1.0000 |
| 7:99560531:AGT:A | acceptor_gain | 1.0000 |
| 7:99560532:G:GG | acceptor_gain | 1.0000 |
| 7:99560532:GTG:G | acceptor_gain | 1.0000 |
| 7:99560532:GTGAT:G | acceptor_gain | 1.0000 |
| 7:99560692:GGGG:G | donor_gain | 1.0000 |
| 7:99560693:GGG:G | donor_gain | 1.0000 |
| 7:99560693:GGGG:G | donor_gain | 1.0000 |
| 7:99560694:GG:G | donor_gain | 1.0000 |
| 7:99560694:GGG:G | donor_gain | 1.0000 |
| 7:99560695:GG:G | donor_gain | 1.0000 |
| 7:99562491:CTGGG:C | donor_loss | 1.0000 |
| 7:99562492:TGGGT:T | donor_loss | 1.0000 |
| 7:99562493:GGGT:G | donor_loss | 1.0000 |
| 7:99562495:GT:G | donor_loss | 1.0000 |
| 7:99562496:T:G | donor_loss | 1.0000 |
| 7:99558789:T:G | donor_loss | 0.9900 |
| 7:99558790:GAG:G | donor_loss | 0.9900 |
| 7:99560528:TGCA:T | acceptor_loss | 0.9900 |
| 7:99560529:GCA:G | acceptor_loss | 0.9900 |
| 7:99560530:CA:C | acceptor_loss | 0.9900 |
| 7:99560532:GT:G | acceptor_gain | 0.9900 |
| 7:99560532:GTGA:G | acceptor_gain | 0.9900 |
| 7:99560581:G:GT | donor_gain | 0.9900 |
| 7:99560684:G:T | donor_gain | 0.9900 |
| 7:99560694:GGGT:G | donor_loss | 0.9900 |
| 7:99560695:GGT:G | donor_loss | 0.9900 |
| 7:99560697:T:A | donor_loss | 0.9900 |
| 7:99560697:T:TC | donor_loss | 0.9900 |
| 7:99562493:GG:G | donor_gain | 0.9900 |
AlphaMissense
3327 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 7:99572853:T:C | F249L | 0.995 |
| 7:99572855:C:A | F249L | 0.995 |
| 7:99572855:C:G | F249L | 0.995 |
| 7:99572769:T:C | F221L | 0.993 |
| 7:99572771:C:A | F221L | 0.993 |
| 7:99572771:C:G | F221L | 0.993 |
| 7:99572798:T:A | H230Q | 0.990 |
| 7:99572798:T:G | H230Q | 0.990 |
| 7:99572810:T:A | H234Q | 0.990 |
| 7:99572810:T:G | H234Q | 0.990 |
| 7:99572878:G:C | R257P | 0.990 |
| 7:99572788:T:C | L227P | 0.989 |
| 7:99572796:C:G | H230D | 0.989 |
| 7:99572800:A:C | Q231P | 0.987 |
| 7:99572880:C:G | H258D | 0.987 |
| 7:99572335:T:C | L76P | 0.986 |
| 7:99573042:T:C | F312L | 0.986 |
| 7:99573044:C:A | F312L | 0.986 |
| 7:99573044:C:G | F312L | 0.986 |
| 7:99572882:T:A | H258Q | 0.985 |
| 7:99572882:T:G | H258Q | 0.985 |
| 7:99572416:T:C | L103P | 0.983 |
| 7:99572748:T:C | C214R | 0.983 |
| 7:99572770:T:C | F221S | 0.983 |
| 7:99572872:T:C | L255P | 0.982 |
| 7:99572894:C:A | H262Q | 0.982 |
| 7:99572894:C:G | H262Q | 0.982 |
| 7:99573273:T:C | F389L | 0.982 |
| 7:99573275:C:A | F389L | 0.982 |
| 7:99573275:C:G | F389L | 0.982 |
dbSNP variants (sampled 300 via entrez): RS1000018298 (7:99568666 C>T), RS1000051968 (7:99558820 C>T), RS1000485501 (7:99568284 G>A,T), RS1000654673 (7:99570294 T>G), RS1000722854 (7:99558609 C>T), RS1000776518 (7:99564760 G>A), RS1000829527 (7:99563433 C>T), RS1001075085 (7:99558778 C>G,T), RS1001482796 (7:99574465 A>G), RS1001498757 (7:99565676 C>T), RS1001742771 (7:99573335 A>C,G,T), RS1001783177 (7:99565985 T>C), RS1002127509 (7:99559635 T>A), RS1002159700 (7:99566680 C>G,T), RS1002187295 (7:99566382 A>G)
Disease associations
OMIM: gene MIM:617891 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
3 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST006249_21 | Serum metabolite levels | 4.000000e-11 |
| GCST006249_22 | Serum metabolite levels | 2.000000e-12 |
| GCST006249_46 | Serum metabolite levels | 4.000000e-21 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
45 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects expression, decreases expression, increases expression | 3 |
| trichostatin A | affects cotreatment, decreases expression | 2 |
| FR900359 | increases phosphorylation | 1 |
| TAK-243 | increases sumoylation | 1 |
| geldanamycin | increases expression | 1 |
| methylmercuric chloride | decreases expression | 1 |
| alpha-pinene | affects cotreatment, increases expression, increases abundance | 1 |
| sodium arsenite | increases expression | 1 |
| manganese chloride | increases abundance, increases expression | 1 |
| methacrylaldehyde | increases expression, increases abundance, affects cotreatment | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| CGP 52608 | increases reaction, affects binding | 1 |
| K 7174 | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| torcetrapib | increases expression | 1 |
| abrine | increases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| Resveratrol | affects cotreatment, increases expression | 1 |
| Temozolomide | affects response to substance | 1 |
| Sunitinib | increases expression | 1 |
| Acetaminophen | decreases expression | 1 |
| Acrolein | affects cotreatment, increases expression, increases abundance | 1 |
| Air Pollutants | affects cotreatment, increases abundance, increases expression | 1 |
| Arsenic | affects methylation | 1 |
| Vehicle Emissions | increases abundance, increases expression | 1 |
| Benzene | increases expression | 1 |
| Caffeine | decreases phosphorylation | 1 |
| Carmustine | affects response to substance | 1 |
| Diethylstilbestrol | increases expression | 1 |
| Dimethyl Sulfoxide | increases expression | 1 |
Cellosaurus cell lines
4 cell lines: 3 cancer cell line, 1 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_E2PV | HAP1 ZNF655 (-) 1 | Cancer cell line | Male |
| CVCL_E2PW | HAP1 ZNF655 (-) 2 | Cancer cell line | Male |
| CVCL_E2PX | HAP1 ZNF655 (-) 3 | Cancer cell line | Male |
| CVCL_HD37 | HEK293 eGFP-ZNF655 | Transformed cell line | Female |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.