ZNF687
gene geneOn this page
Also known as KIAA1441
Summary
ZNF687 (zinc finger protein 687, HGNC:29277) is a protein-coding gene on chromosome 1q21.3, encoding Zinc finger protein 687 (Q8N1G0). May be involved in transcriptional regulation. It is a selective cancer dependency (DepMap: 18.5% of cell lines).
This gene encodes C2H2 zinc finger protein. The encoded protein may play a role in bone differentiation and development. Mutations in this gene are the cause of Paget disease of bone-6. Alternate splicing results in multiple transcript variants.
Source: NCBI Gene 57592 — RefSeq curated summary.
At a glance
- Gene–disease (curated): Paget disease of bone 6 (Strong, GenCC)
- GWAS associations: 1
- Clinical variants (ClinVar): 601 total — 1 pathogenic
- Phenotypes (HPO): 9
- Cancer dependency (DepMap): dependent in 18.5% of screened cell lines
- MANE Select transcript:
NM_020832
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:29277 |
| Approved symbol | ZNF687 |
| Name | zinc finger protein 687 |
| Location | 1q21.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | KIAA1441 |
| Ensembl gene | ENSG00000143373 |
| Ensembl biotype | protein_coding |
| OMIM | 610568 |
| Entrez | 57592 |
Gene structure
Transcript identifiers
Ensembl transcripts: 18 — 16 protein_coding, 1 nonsense_mediated_decay, 1 retained_intron
ENST00000324048, ENST00000336715, ENST00000426871, ENST00000436614, ENST00000443959, ENST00000449313, ENST00000459919, ENST00000853018, ENST00000853020, ENST00000853022, ENST00000853023, ENST00000853024, ENST00000853025, ENST00000853026, ENST00000853027, ENST00000853028, ENST00000923908, ENST00000923909
RefSeq mRNA: 3 — MANE Select: NM_020832
NM_001304763, NM_001304764, NM_020832
CCDS: CCDS992
Canonical transcript exons
ENST00000336715 — 9 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000959649 | 151289095 | 151289271 |
| ENSE00000959650 | 151289378 | 151289540 |
| ENSE00001350923 | 151286275 | 151288406 |
| ENSE00001904321 | 151282299 | 151282395 |
| ENSE00003171380 | 151290715 | 151292176 |
| ENSE00003515871 | 151288528 | 151288706 |
| ENSE00003584768 | 151289678 | 151290007 |
| ENSE00003628388 | 151290432 | 151290573 |
| ENSE00003657693 | 151290122 | 151290234 |
Expression profiles
Bgee: expression breadth ubiquitous, 197 present calls, max score 95.34.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 14.3375 / max 127.0703, expressed in 1795 samples.
FANTOM5 promoters (5 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 5221 | 11.0013 | 1781 |
| 5220 | 1.6007 | 828 |
| 5223 | 1.0940 | 536 |
| 5222 | 0.3815 | 177 |
| 201729 | 0.2599 | 131 |
Top tissues by expression
248 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| kidney epithelium | UBERON:0004819 | 95.34 | gold quality |
| cardiac muscle of right atrium | UBERON:0003379 | 91.46 | silver quality |
| left ventricle myocardium | UBERON:0006566 | 90.39 | silver quality |
| upper arm skin | UBERON:0004263 | 88.03 | gold quality |
| cardia of stomach | UBERON:0001162 | 87.77 | silver quality |
| granulocyte | CL:0000094 | 87.24 | gold quality |
| epithelial cell of pancreas | CL:0000083 | 87.12 | gold quality |
| ventricular zone | UBERON:0003053 | 86.48 | gold quality |
| vena cava | UBERON:0004087 | 86.35 | gold quality |
| bone marrow cell | CL:0002092 | 86.09 | gold quality |
| ileal mucosa | UBERON:0000331 | 85.90 | silver quality |
| ventral tegmental area | UBERON:0002691 | 84.99 | silver quality |
| blood | UBERON:0000178 | 84.69 | gold quality |
| nipple | UBERON:0002030 | 84.66 | gold quality |
| subthalamic nucleus | UBERON:0001906 | 84.63 | gold quality |
| trachea | UBERON:0003126 | 84.53 | gold quality |
| leukocyte | CL:0000738 | 84.48 | gold quality |
| apex of heart | UBERON:0002098 | 84.36 | gold quality |
| monocyte | CL:0000576 | 84.35 | gold quality |
| body of tongue | UBERON:0011876 | 84.29 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 84.20 | gold quality |
| inferior vagus X ganglion | UBERON:0005363 | 84.14 | silver quality |
| lower esophagus mucosa | UBERON:0035834 | 84.14 | gold quality |
| cerebellar vermis | UBERON:0004720 | 84.07 | silver quality |
| dorsal plus ventral thalamus | UBERON:0001897 | 84.05 | silver quality |
| ganglionic eminence | UBERON:0004023 | 83.87 | gold quality |
| tongue | UBERON:0001723 | 83.80 | silver quality |
| adenohypophysis | UBERON:0002196 | 83.68 | gold quality |
| superior surface of tongue | UBERON:0007371 | 83.65 | gold quality |
| pharyngeal mucosa | UBERON:0000355 | 83.53 | silver quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-6058 | no | 70.25 |
| E-ANND-3 | no | 3.06 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
49 targeting ZNF687, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-126-5P | 100.00 | 72.71 | 3180 |
| HSA-MIR-12118 | 100.00 | 65.88 | 1270 |
| HSA-MIR-4795-3P | 100.00 | 74.62 | 4024 |
| HSA-MIR-1252-5P | 100.00 | 69.80 | 2774 |
| HSA-MIR-1184 | 99.99 | 68.19 | 1458 |
| HSA-MIR-4514 | 99.99 | 67.10 | 1870 |
| HSA-MIR-6891-5P | 99.98 | 66.53 | 1372 |
| HSA-MIR-8068 | 99.98 | 73.85 | 2376 |
| HSA-MIR-3173-3P | 99.98 | 66.49 | 1217 |
| HSA-MIR-4778-3P | 99.93 | 70.40 | 1818 |
| HSA-MIR-7107-3P | 99.93 | 66.73 | 627 |
| HSA-MIR-6753-3P | 99.93 | 66.57 | 637 |
| HSA-MIR-629-3P | 99.85 | 67.99 | 1875 |
| HSA-MIR-1321 | 99.84 | 65.30 | 1811 |
| HSA-MIR-4739 | 99.84 | 65.25 | 1832 |
| HSA-MIR-4756-5P | 99.84 | 64.98 | 1809 |
| HSA-MIR-4668-5P | 99.79 | 70.58 | 3782 |
| HSA-MIR-4306 | 99.72 | 70.50 | 3630 |
| HSA-MIR-1200 | 99.71 | 70.42 | 1838 |
| HSA-MIR-4527 | 99.66 | 67.43 | 714 |
| HSA-MIR-6887-3P | 99.66 | 67.83 | 1778 |
| HSA-MIR-4690-5P | 99.65 | 66.24 | 813 |
| HSA-MIR-6503-5P | 99.62 | 66.96 | 597 |
| HSA-MIR-24-3P | 99.59 | 69.97 | 1934 |
| HSA-MIR-4328 | 99.57 | 71.06 | 4094 |
| HSA-MIR-4437 | 99.52 | 65.29 | 1266 |
| HSA-MIR-3147 | 99.52 | 66.34 | 388 |
| HSA-MIR-12132 | 99.47 | 68.90 | 1341 |
| HSA-MIR-6722-3P | 99.45 | 67.62 | 1919 |
| HSA-MIR-569 | 99.42 | 66.32 | 1009 |
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 18.5% of screened cell lines.
Literature-anchored findings (GeneRIF, showing 5)
- ZNF687 Expression increased in paget disease of bone Affected Individuals. (PMID:26849110)
- ZNF687-mutated patients showed a severe Paget’s disease of bone, with a remarkable number of affected sites (PMID:29493781)
- ZNF687 Mutations in an Extended Cohort of Neoplastic Transformations in Paget’s Disease of Bone: Implications for Clinical Pathology. (PMID:32106343)
- Oncogenic zinc finger protein ZNF687 accelerates lung adenocarcinoma cell proliferation and tumor progression by activating the PI3K/AKT signaling pathway. (PMID:36944484)
- FTO-mediated ZNF687 accelerates tumor growth, metastasis, and angiogenesis in colorectal cancer through the Wnt/beta-catenin pathway. (PMID:37983718)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | znf687b | ENSDARG00000019299 |
| danio_rerio | znf687a | ENSDARG00000102774 |
| mus_musculus | Zfp687 | ENSMUSG00000019338 |
| rattus_norvegicus | Zfp687 | ENSRNOG00000021026 |
Paralogs (51): WIZ (ENSG00000011451), ZNF416 (ENSG00000083817), MYNN (ENSG00000085274), PRDM4 (ENSG00000110851), PRDM2 (ENSG00000116731), ZBTB17 (ENSG00000116809), ZNF644 (ENSG00000122482), GZF1 (ENSG00000125812), ZNF426 (ENSG00000130818), ZNF287 (ENSG00000141040), ZNF697 (ENSG00000143067), ZNF214 (ENSG00000149050), ZNF547 (ENSG00000152433), ZNF776 (ENSG00000152443), ZNF230 (ENSG00000159882), ZNF222 (ENSG00000159885), ZNF233 (ENSG00000159915), ZNF333 (ENSG00000160961), ZNF319 (ENSG00000166188), ZNF592 (ENSG00000166716), ZNF646 (ENSG00000167395), ZNF507 (ENSG00000168813), ZNF768 (ENSG00000169957), ZNF417 (ENSG00000173480), ZNF408 (ENSG00000175213), ZBTB41 (ENSG00000177888), ZNF223 (ENSG00000178386), ZNF852 (ENSG00000178917), ZNF784 (ENSG00000179922), ZNF572 (ENSG00000180938), ZNF707 (ENSG00000181135), ZNF746 (ENSG00000181220), ZNF467 (ENSG00000181444), ZNF530 (ENSG00000183647), ZNF17 (ENSG00000186272), ZNF527 (ENSG00000189164), ZKSCAN7 (ENSG00000196345), ZNF34 (ENSG00000196378), ZNF774 (ENSG00000196391), ZNF777 (ENSG00000196453)
Protein
Protein identifiers
Zinc finger protein 687 — Q8N1G0 (reviewed: Q8N1G0)
All UniProt accessions (5): Q8N1G0, A2A3Q2, A6PVV7, F8WCX2, H0Y5I5
UniProt curated annotations — full annotation on UniProt →
Function. May be involved in transcriptional regulation.
Subunit / interactions. Interacts with ZMYND8.
Subcellular location. Cytoplasm. Nucleus.
Tissue specificity. Widely expressed with highest levels in obvary, muscle, blood and lung.
Disease relevance. Paget disease of bone 6 (PDB6) [MIM:616833] An autosomal dominant form of Paget disease, a disorder of bone remodeling characterized by increased bone turnover affecting one or more sites throughout the skeleton, primarily the axial skeleton. Osteoclastic overactivity followed by compensatory osteoblastic activity leads to a structurally disorganized mosaic of bone (woven bone), which is mechanically weaker, larger, less compact, more vascular, and more susceptible to fracture than normal adult lamellar bone. PDB6 is characterized by adult onset of bone pain associated with polyostotic bone lesions primarily affecting the axial skeleton. In some cases, the pagetic tissue undergoes neoplastic transformation, resulting in osteosarcoma and, less frequently, in giant cell tumor of bone. The disease is caused by variants affecting the gene represented in this entry.
Similarity. Belongs to the krueppel C2H2-type zinc-finger protein family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q8N1G0-1 | 1 | yes |
| Q8N1G0-2 | 2 |
RefSeq proteins (3): NP_001291692, NP_001291693, NP_065883* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR013087 | Znf_C2H2_type | Domain |
| IPR036236 | Znf_C2H2_sf | Homologous_superfamily |
| IPR041697 | Znf-C2H2_11 | Domain |
| IPR045914 | Zn532-like | Family |
| IPR057356 | Znf-C2H2_ZNF592 | Domain |
Pfam: PF00096, PF16622, PF25412
UniProt features (70 total): modified residue 26, cross-link 12, zinc finger region 10, compositionally biased region 6, region of interest 5, sequence variant 4, sequence conflict 4, splice variant 2, chain 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q8N1G0-F1 | 53.34 | 0.00 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (38): 102, 129, 140, 148, 227, 242, 251, 253, 266, 271, 374, 377, 433, 495, 900, 1057, 1060, 1082, 1083, 1085 …
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-9940951 | Interaction of NuRD complexes with transcription factors |
MSigDB gene sets: 170 (showing top):
E2F_Q4, E2F_Q4_01, E2F4DP1_01, RORA1_01, MAZ_Q6, TGACCTY_ERR1_Q2, AAAYRNCTG_UNKNOWN, SP1_Q2_01, CREB_Q4, GTGCCTT_MIR506, E2F1DP1_01, E2F1DP2_01, NF1_Q6_01, E4F1_Q6, CREB_Q2_01
GO Biological Process (1): regulation of DNA-templated transcription (GO:0006355)
GO Molecular Function (5): DNA binding (GO:0003677), DNA-binding transcription factor activity (GO:0003700), zinc ion binding (GO:0008270), protein binding (GO:0005515), metal ion binding (GO:0046872)
GO Cellular Component (4): nucleoplasm (GO:0005654), cytosol (GO:0005829), nucleus (GO:0005634), cytoplasm (GO:0005737)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| NuRD complex assembly | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| DNA-templated transcription | 1 |
| regulation of gene expression | 1 |
| regulation of RNA biosynthetic process | 1 |
| nucleic acid binding | 1 |
| transcription cis-regulatory region binding | 1 |
| regulation of DNA-templated transcription | 1 |
| transcription regulator activity | 1 |
| transition metal ion binding | 1 |
| binding | 1 |
| cation binding | 1 |
| nuclear lumen | 1 |
| cytoplasm | 1 |
| intracellular membrane-bounded organelle | 1 |
| intracellular anatomical structure | 1 |
Protein interactions and networks
STRING
1141 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ZNF687 | ZMYND8 | Q9ULU4 | 870 |
| ZNF687 | ZNF592 | Q92610 | 749 |
| ZNF687 | SH3D19 | Q5HYK7 | 745 |
| ZNF687 | YTHDF2 | Q9Y5A9 | 667 |
| ZNF687 | RUNX1 | Q01196 | 579 |
| ZNF687 | HMGB2 | P26583 | 549 |
| ZNF687 | CBFA2T3 | O75081 | 527 |
| ZNF687 | ZNF536 | O15090 | 526 |
| ZNF687 | CDK2AP1 | O14519 | 518 |
| ZNF687 | ZFPM2 | Q8WW38 | 518 |
| ZNF687 | CCNT1 | O60563 | 500 |
| ZNF687 | MECOM | Q03112 | 495 |
| ZNF687 | CBFB | Q13951 | 492 |
| ZNF687 | TNFRSF11A | Q9Y6Q6 | 483 |
| ZNF687 | RBBP7 | Q16576 | 476 |
IntAct
108 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| LLGL2 | PRKCI | psi-mi:“MI:0914”(association) | 0.890 |
| CSNK2A1 | EIF3J | psi-mi:“MI:0914”(association) | 0.810 |
| CSNK2A2 | EIF3J | psi-mi:“MI:0914”(association) | 0.790 |
| MED23 | MED19 | psi-mi:“MI:2364”(proximity) | 0.770 |
| MBD3 | CDK2AP1 | psi-mi:“MI:0914”(association) | 0.730 |
| ZNF687 | TSPYL2 | psi-mi:“MI:0915”(physical association) | 0.670 |
| CSNK2B | RPS6KA5 | psi-mi:“MI:0914”(association) | 0.660 |
| CSNK2B | NMT2 | psi-mi:“MI:0914”(association) | 0.660 |
| P4HA3 | FAM171A2 | psi-mi:“MI:0914”(association) | 0.640 |
| CSNK2B | RPS6KA4 | psi-mi:“MI:0914”(association) | 0.640 |
| CSNK2A2 | PES1 | psi-mi:“MI:0914”(association) | 0.640 |
| ARIH1 | SPOP | psi-mi:“MI:0914”(association) | 0.530 |
| TSPYL1 | GPC3 | psi-mi:“MI:0914”(association) | 0.530 |
| KCTD17 | CBX4 | psi-mi:“MI:0914”(association) | 0.530 |
| ZNF408 | LRP4 | psi-mi:“MI:0914”(association) | 0.530 |
| ABT1 | ZNF316 | psi-mi:“MI:0914”(association) | 0.530 |
| RPS3 | ZNF316 | psi-mi:“MI:0914”(association) | 0.530 |
| CDKN2A | ZNF687 | psi-mi:“MI:0915”(physical association) | 0.370 |
| Tpx2 | NFKBIE | psi-mi:“MI:0914”(association) | 0.350 |
| Tnks | SDC2 | psi-mi:“MI:0914”(association) | 0.350 |
| KDM5C | CSNK2A1 | psi-mi:“MI:0914”(association) | 0.350 |
| Srp72 | psi-mi:“MI:0914”(association) | 0.350 | |
| CDK2AP1 | MTA3 | psi-mi:“MI:0914”(association) | 0.350 |
| ZMYND8 | MTA3 | psi-mi:“MI:0914”(association) | 0.350 |
| ZNF687 | DDX24 | psi-mi:“MI:0914”(association) | 0.350 |
| Mta1 | MTA3 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (156): ZNF687 (Affinity Capture-MS), ZNF687 (Affinity Capture-MS), ZNF687 (Affinity Capture-MS), ZNF687 (Affinity Capture-MS), ZNF687 (Affinity Capture-MS), ZNF687 (Proximity Label-MS), CENPB (Affinity Capture-MS), ZNF592 (Affinity Capture-MS), PTGR1 (Affinity Capture-MS), ZMYND8 (Affinity Capture-MS), GATAD2A (Affinity Capture-MS), DDX24 (Affinity Capture-MS), ZNF687 (Affinity Capture-MS), ZNF687 (Affinity Capture-MS), ZNF687 (Affinity Capture-MS)
ESM2 similar proteins: A0JNJ4, A2APT9, A6NEL2, A6NP61, B1ASB6, B1WBS3, B2RXF5, F6WEQ6, O15015, O43918, O88282, O88286, O95785, P98168, P98169, Q2M3G4, Q2MHN3, Q2QGD7, Q3U1J1, Q3U381, Q497V6, Q5SW24, Q5SXM2, Q6YND2, Q6ZMQ8, Q6ZMY3, Q7TN08, Q7TSX9, Q80SU3, Q80YE4, Q811H0, Q8BG26, Q8BZW2, Q8C8V1, Q8IX07, Q8IY92, Q8N143, Q8N1G0, Q8NC74, Q8TBE0
Diamond homologs: A0A0R4IYX6, F6NSX9, Q6NXK2, Q8BHZ4, Q8N1G0, Q92610, Q9D2D7, Q9HCE3
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 130 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Transcriptional regulation of brown and beige adipocyte differentiation by EBF2 | 6 | 24.8× | 1e-05 |
| Regulation of TP53 Activity through Acetylation | 5 | 24.8× | 8e-05 |
| RNA Polymerase I Transcription Initiation | 7 | 17.0× | 1e-05 |
| Differentiation of naive CD4+ T cells to T helper 2 cells (Th2 cells) | 10 | 15.9× | 4e-07 |
| Regulation of PTEN gene transcription | 8 | 15.5× | 4e-06 |
| SPOP-mediated proteasomal degradation of PD-L1(CD274) | 6 | 14.9× | 1e-04 |
| NuRD complex assembly | 9 | 13.8× | 3e-06 |
| Interaction of NuRD complexes with transcription factors | 9 | 12.4× | 4e-06 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| regulation of stem cell differentiation | 6 | 40.3× | 1e-06 |
| negative regulation of proteasomal ubiquitin-dependent protein catabolic process | 5 | 17.6× | 1e-03 |
| chromatin remodeling | 12 | 7.7× | 1e-05 |
| regulation of cell cycle | 8 | 5.2× | 9e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
601 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 0 |
| Uncertain significance | 371 |
| Likely benign | 181 |
| Benign | 23 |
Top pathogenic / likely-pathogenic (1)
| Variant ID | HGVS | Classification |
|---|---|---|
| 222988 | NM_020832.3(ZNF687):c.725G>T (p.Ser242Ile) | Pathogenic |
SpliceAI
1436 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:151282396:G:GG | donor_gain | 1.0000 |
| 1:151286271:TCAGG:T | acceptor_loss | 1.0000 |
| 1:151286272:CAG:C | acceptor_loss | 1.0000 |
| 1:151288402:GCAAT:G | donor_gain | 1.0000 |
| 1:151288404:AATG:A | donor_loss | 1.0000 |
| 1:151288405:ATGTG:A | donor_loss | 1.0000 |
| 1:151288406:TGTG:T | donor_loss | 1.0000 |
| 1:151288407:G:GG | donor_gain | 1.0000 |
| 1:151288407:G:T | donor_loss | 1.0000 |
| 1:151288408:T:G | donor_loss | 1.0000 |
| 1:151289272:G:GG | donor_gain | 1.0000 |
| 1:151289375:CAGGC:C | acceptor_loss | 1.0000 |
| 1:151289376:A:AG | acceptor_gain | 1.0000 |
| 1:151289376:AGGCT:A | acceptor_gain | 1.0000 |
| 1:151289377:G:GG | acceptor_gain | 1.0000 |
| 1:151289377:GGCT:G | acceptor_gain | 1.0000 |
| 1:151289377:GGCTG:G | acceptor_gain | 1.0000 |
| 1:151289536:TCAAG:T | donor_loss | 1.0000 |
| 1:151289538:AAGG:A | donor_loss | 1.0000 |
| 1:151289539:AGGT:A | donor_loss | 1.0000 |
| 1:151289541:GTAC:G | donor_loss | 1.0000 |
| 1:151289675:CAGA:C | acceptor_loss | 1.0000 |
| 1:151289676:A:AG | acceptor_gain | 1.0000 |
| 1:151289676:AGA:A | acceptor_loss | 1.0000 |
| 1:151289677:G:GG | acceptor_gain | 1.0000 |
| 1:151289677:GA:G | acceptor_gain | 1.0000 |
| 1:151289677:GAAC:G | acceptor_gain | 1.0000 |
| 1:151289828:G:GT | donor_gain | 1.0000 |
| 1:151289831:G:GT | donor_gain | 1.0000 |
| 1:151289831:G:T | donor_gain | 1.0000 |
AlphaMissense
8020 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 1:151286311:C:A | P7H | 1.000 |
| 1:151286316:T:C | F9L | 1.000 |
| 1:151286317:T:C | F9S | 1.000 |
| 1:151286317:T:G | F9C | 1.000 |
| 1:151286318:T:A | F9L | 1.000 |
| 1:151286318:T:G | F9L | 1.000 |
| 1:151286320:A:T | D10V | 1.000 |
| 1:151286326:T:C | L12P | 1.000 |
| 1:151286329:T:A | L13H | 1.000 |
| 1:151286329:T:C | L13P | 1.000 |
| 1:151286337:T:C | F16L | 1.000 |
| 1:151286338:T:C | F16S | 1.000 |
| 1:151286339:T:A | F16L | 1.000 |
| 1:151286339:T:G | F16L | 1.000 |
| 1:151287894:T:C | C535R | 1.000 |
| 1:151287967:T:A | I559N | 1.000 |
| 1:151287978:T:A | C563S | 1.000 |
| 1:151287978:T:C | C563R | 1.000 |
| 1:151287979:G:A | C563Y | 1.000 |
| 1:151287979:G:C | C563S | 1.000 |
| 1:151287979:G:T | C563F | 1.000 |
| 1:151287980:C:G | C563W | 1.000 |
| 1:151287987:T:C | C566R | 1.000 |
| 1:151287988:G:A | C566Y | 1.000 |
| 1:151287989:C:G | C566W | 1.000 |
| 1:151288005:T:C | F572L | 1.000 |
| 1:151288006:T:C | F572S | 1.000 |
| 1:151288007:C:A | F572L | 1.000 |
| 1:151288007:C:G | F572L | 1.000 |
| 1:151288012:A:T | N574I | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000179997 (1:151291335 TGAA>T), RS1000187800 (1:151287873 C>G,T), RS1000230908 (1:151291651 C>T), RS1000756378 (1:151282308 C>T), RS1000781289 (1:151281308 C>T), RS1000894009 (1:151281058 A>G), RS1001811337 (1:151282517 G>A), RS1001943773 (1:151282718 C>G), RS1002743003 (1:151281732 G>C), RS1002809459 (1:151283800 C>T), RS1002945280 (1:151284087 A>G), RS1002994376 (1:151292571 C>T), RS1003538790 (1:151288436 G>C), RS1003751499 (1:151282655 G>A,T), RS1004217185 (1:151282371 T>A)
Disease associations
OMIM: gene MIM:610568 | disease phenotypes: MIM:616833
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| Paget disease of bone 6 | Strong | Autosomal dominant |
Mondo (1): Paget disease of bone 6 (MONDO:0014792)
Orphanet (0):
HPO phenotypes
9 total (9 of 9 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000121 | Nephrocalcinosis |
| HP:0001677 | Coronary artery atherosclerosis |
| HP:0001712 | Left ventricular hypertrophy |
| HP:0002653 | Bone pain |
| HP:0002757 | Recurrent fractures |
| HP:0002758 | Osteoarthritis |
| HP:0003155 | Elevated circulating alkaline phosphatase concentration |
| HP:0003581 | Adult onset |
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST005951_38 | Body mass index | 4.000000e-09 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004340 | body mass index |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
28 total (human), top 28 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| aristolochic acid I | decreases expression | 1 |
| 3-((6-(2-methoxyphenyl)pyrimidin-4-yl)amino)phenyl)methane sulfonamide | decreases expression | 1 |
| FR900359 | affects phosphorylation | 1 |
| TAK-243 | decreases sumoylation | 1 |
| triphenyl phosphate | affects expression | 1 |
| beta-lapachone | decreases expression | 1 |
| manganese chloride | increases abundance, increases expression | 1 |
| coumarin | affects phosphorylation | 1 |
| nivalenol | increases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| abrine | increases expression | 1 |
| Acetaminophen | decreases expression | 1 |
| Vehicle Emissions | decreases expression, increases abundance | 1 |
| Benzo(a)pyrene | affects methylation | 1 |
| Caffeine | affects phosphorylation | 1 |
| Diazinon | increases methylation | 1 |
| Doxorubicin | decreases expression | 1 |
| Enzyme Inhibitors | decreases activity, increases O-linked glycosylation | 1 |
| Estradiol | affects expression | 1 |
| Lead | decreases expression | 1 |
| Manganese | increases abundance, increases expression | 1 |
| Smoke | decreases expression | 1 |
| Thiram | decreases expression | 1 |
| Urethane | increases expression | 1 |
| Palmitic Acid | increases phosphorylation | 1 |
| Acrylamide | decreases expression | 1 |
| Particulate Matter | decreases expression, increases abundance | 1 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Associated diseases: Paget disease of bone 6
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Paget disease of bone 6