ZNF699
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Also known as FLJ38144
Summary
ZNF699 (zinc finger protein 699, HGNC:24750) is a protein-coding gene on chromosome 19p13.2, encoding Zinc finger protein 699 (Q32M78). May be involved in transcriptional regulation.
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.
Source: NCBI Gene 374879 — RefSeq curated summary.
At a glance
- Gene–disease (curated): DEGCAGS syndrome (Strong, GenCC)
- Clinical variants (ClinVar): 110 total — 9 pathogenic, 5 likely-pathogenic
- Phenotypes (HPO): 125
- Transcription factor: yes — 61 downstream targets (CollecTRI)
- MANE Select transcript:
NM_198535
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:24750 |
| Approved symbol | ZNF699 |
| Name | zinc finger protein 699 |
| Location | 19p13.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ38144 |
| Ensembl gene | ENSG00000196110 |
| Ensembl biotype | protein_coding |
| OMIM | 609571 |
| Entrez | 374879 |
Gene structure
Transcript identifiers
Ensembl transcripts: 4 — 3 protein_coding, 1 protein_coding_CDS_not_defined
ENST00000308650, ENST00000588336, ENST00000591998, ENST00000952100
RefSeq mRNA: 1 — MANE Select: NM_198535
NM_198535
CCDS: CCDS42495
Canonical transcript exons
ENST00000591998 — 6 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001200051 | 9297296 | 9297479 |
| ENSE00001200066 | 9291140 | 9296933 |
| ENSE00001218018 | 9297880 | 9297990 |
| ENSE00001601798 | 9302378 | 9302504 |
| ENSE00002849646 | 9305072 | 9305124 |
| ENSE00002957298 | 9309350 | 9309838 |
Expression profiles
Bgee: expression breadth ubiquitous, 134 present calls, max score 82.63.
FANTOM5 (CAGE): breadth broad, TPM avg 1.3819 / max 28.7072, expressed in 745 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 179001 | 1.3145 | 692 |
| 179000 | 0.0674 | 17 |
Top tissues by expression
134 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| calcaneal tendon | UBERON:0003701 | 82.63 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 76.07 | gold quality |
| cortical plate | UBERON:0005343 | 75.64 | gold quality |
| ganglionic eminence | UBERON:0004023 | 72.55 | gold quality |
| islet of Langerhans | UBERON:0000006 | 71.56 | gold quality |
| colonic epithelium | UBERON:0000397 | 71.46 | gold quality |
| stromal cell of endometrium | CL:0002255 | 71.07 | gold quality |
| endometrium | UBERON:0001295 | 70.85 | gold quality |
| ventricular zone | UBERON:0003053 | 70.82 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 69.38 | gold quality |
| lymph node | UBERON:0000029 | 69.17 | gold quality |
| leukocyte | CL:0000738 | 69.13 | gold quality |
| corpus callosum | UBERON:0002336 | 68.72 | gold quality |
| monocyte | CL:0000576 | 68.70 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 68.47 | gold quality |
| granulocyte | CL:0000094 | 68.37 | gold quality |
| bone marrow cell | CL:0002092 | 68.35 | silver quality |
| bone marrow | UBERON:0002371 | 68.28 | gold quality |
| tonsil | UBERON:0002372 | 68.28 | gold quality |
| adrenal tissue | UBERON:0018303 | 68.27 | gold quality |
| urinary bladder | UBERON:0001255 | 67.74 | gold quality |
| ovary | UBERON:0000992 | 67.39 | gold quality |
| left ovary | UBERON:0002119 | 66.70 | gold quality |
| mucosa of stomach | UBERON:0001199 | 66.50 | gold quality |
| body of uterus | UBERON:0009853 | 66.37 | gold quality |
| myometrium | UBERON:0001296 | 66.36 | gold quality |
| vermiform appendix | UBERON:0001154 | 66.14 | gold quality |
| tibial artery | UBERON:0007610 | 66.07 | gold quality |
| popliteal artery | UBERON:0002250 | 66.05 | gold quality |
| right ovary | UBERON:0002118 | 66.02 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 4.10 |
Regulation
Is transcription factor: yes
Downstream targets (CollecTRI)
61 targets.
| Target | Regulation |
|---|---|
| ABCB1 | |
| AFP | |
| AKT1 | |
| ASCL1 | |
| CCND2 | |
| CDH1 | |
| CDK2 | |
| CHL1 | |
| CHMP4A | |
| CR1 | |
| CYP21A1P | |
| CYP7A1 | |
| DDX11 | |
| DNAJB1 | |
| DSC1 | |
| EHD1 | |
| EIF3K | |
| ERBB2 | |
| ETS2 | |
| FASLG | |
| FGFR1 | |
| FGFR3 | |
| FLII | |
| GAD1 | |
| GJA1 | |
| GNAS | |
| GPRASP1 | |
| GRPR | |
| HTR2C | |
| IDO1 |
JASPAR motifs
| Motif | Name | Family |
|---|---|---|
| MA2525.1 | ZNF699 | More than 3 adjacent zinc fingers |
JASPAR matrix evidence (PMIDs): PMID:39605530
miRNA regulators (miRDB)
153 targeting ZNF699, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3924 | 100.00 | 72.09 | 2394 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-4262 | 100.00 | 73.26 | 3931 |
| HSA-MIR-656-3P | 100.00 | 72.15 | 2788 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-4673 | 100.00 | 66.64 | 1490 |
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-4481 | 100.00 | 66.42 | 1669 |
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-MIR-5692B | 100.00 | 71.32 | 2622 |
| HSA-MIR-5692C | 100.00 | 71.32 | 2622 |
| HSA-MIR-1252-5P | 100.00 | 69.80 | 2774 |
| HSA-MIR-450A-1-3P | 100.00 | 69.33 | 1837 |
| HSA-MIR-186-5P | 99.99 | 70.83 | 3707 |
| HSA-MIR-371B-5P | 99.99 | 75.34 | 4759 |
| HSA-MIR-181A-5P | 99.99 | 72.96 | 2995 |
| HSA-MIR-181B-5P | 99.99 | 72.97 | 2996 |
| HSA-MIR-181C-5P | 99.99 | 72.95 | 2996 |
| HSA-MIR-181D-5P | 99.99 | 73.04 | 2997 |
| HSA-MIR-548P | 99.98 | 72.25 | 3784 |
| HSA-MIR-373-5P | 99.98 | 75.36 | 4753 |
| HSA-MIR-616-5P | 99.98 | 75.58 | 4775 |
| HSA-MIR-4645-5P | 99.98 | 65.81 | 1284 |
| HSA-MIR-12136 | 99.98 | 72.81 | 5713 |
| HSA-MIR-4745-5P | 99.98 | 65.95 | 1028 |
| HSA-MIR-1185-1-3P | 99.98 | 71.04 | 2593 |
| HSA-MIR-1185-2-3P | 99.98 | 71.04 | 2593 |
| HSA-LET-7F-2-3P | 99.98 | 70.98 | 2588 |
| HSA-MIR-3065-5P | 99.97 | 71.56 | 3281 |
| HSA-MIR-302C-5P | 99.97 | 72.56 | 3642 |
Literature-anchored findings (GeneRIF, showing 2)
- In analyses of genetically independent cases and controls, four of the seven single markers show strong evidence for association with alcohol dependence, and the most significant single marker, rs7254880, tags an associated haplotype with frequency 0.071. (PMID:16940975)
- Results show no associations between polymorphisms in ZNF699 and alcohol dependence per se but s significant allelic association was found between rs7254880 in ZNF699 and alcohol-related cirrhosis. (PMID:26368818)
Cross-species orthologs
0 orthologs
Paralogs (176): ZNF195 (ENSG00000005801), ZNF112 (ENSG00000062370), ZNF275 (ENSG00000063587), ZNF37A (ENSG00000075407), ZNF510 (ENSG00000081386), ZNF506 (ENSG00000081665), ZNF268 (ENSG00000090612), MZF1 (ENSG00000099326), ZNF629 (ENSG00000102870), ZNF175 (ENSG00000105497), ZNF85 (ENSG00000105750), ZFP30 (ENSG00000120784), ZNF45 (ENSG00000124459), ZNF391 (ENSG00000124613), ZNF436 (ENSG00000125945), ZNF484 (ENSG00000127081), ZNF835 (ENSG00000127903), ZNF780B (ENSG00000128000), ZSCAN10 (ENSG00000130182), ZNF317 (ENSG00000130803), ZNF331 (ENSG00000130844), ZNF227 (ENSG00000131115), ZNF141 (ENSG00000131127), ZNF132 (ENSG00000131849), ZNF189 (ENSG00000136870), ZIM3 (ENSG00000141946), ZFP14 (ENSG00000142065), ZNF514 (ENSG00000144026), ZNF300 (ENSG00000145908), RBAK (ENSG00000146587), ZNF157 (ENSG00000147117), ZNF182 (ENSG00000147118), ZNF41 (ENSG00000147124), ZNF7 (ENSG00000147789), ZNF117 (ENSG00000152926), ZNF221 (ENSG00000159905), ZNF235 (ENSG00000159917), ZNF714 (ENSG00000160352), ZNF577 (ENSG00000161551), ZNF12 (ENSG00000164631)
Protein
Protein identifiers
Zinc finger protein 699 — Q32M78 (reviewed: Q32M78)
Alternative names: Hangover homolog
All UniProt accessions (1): Q32M78
UniProt curated annotations — full annotation on UniProt →
Function. May be involved in transcriptional regulation.
Subcellular location. Nucleus.
Disease relevance. DEGCAGS syndrome (DEGCAGS) [MIM:619488] An autosomal recessive neurodevelopmental disorder characterized by global developmental delay, coarse facial features, and abnormalities of the cardiovascular, gastrointestinal, genitourinary and skeletal system. Other common features included anemia or pancytopenia, immunodeficiency and recurrent infections, and sensorineural hearing impairment. Death in childhood may occur. The disease may be caused by variants affecting the gene represented in this entry.
Similarity. Belongs to the krueppel C2H2-type zinc-finger protein family.
RefSeq proteins (1): NP_940937* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001909 | KRAB | Domain |
| IPR013087 | Znf_C2H2_type | Domain |
| IPR036051 | KRAB_dom_sf | Homologous_superfamily |
| IPR036236 | Znf_C2H2_sf | Homologous_superfamily |
Pfam: PF00096, PF01352
UniProt features (18 total): zinc finger region 16, chain 1, domain 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q32M78-F1 | 70.23 | 0.07 |
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-212436 | Generic Transcription Pathway |
MSigDB gene sets: 325 (showing top):
chr19p13, GOMF_SEQUENCE_SPECIFIC_DNA_BINDING, PEDRIOLI_MIR31_TARGETS_UP, GOMF_TRANSCRIPTION_REGULATOR_ACTIVITY, ZNF407_TARGET_GENES, MIR616_5P, MIR371B_5P, MIR373_5P, MIR4262, MIR548P, MIR186_5P, MIR3133, MIR656_3P, MIR204_5P, MIR211_5P
GO Biological Process (2): regulation of transcription by RNA polymerase II (GO:0006357), regulation of DNA-templated transcription (GO:0006355)
GO Molecular Function (6): RNA polymerase II cis-regulatory region sequence-specific DNA binding (GO:0000978), DNA-binding transcription factor activity, RNA polymerase II-specific (GO:0000981), zinc ion binding (GO:0008270), DNA binding (GO:0003677), protein binding (GO:0005515), metal ion binding (GO:0046872)
GO Cellular Component (1): nucleus (GO:0005634)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| RNA Polymerase II Transcription | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| RNA polymerase II transcription regulatory region sequence-specific DNA binding | 2 |
| regulation of DNA-templated transcription | 1 |
| transcription by RNA polymerase II | 1 |
| DNA-templated transcription | 1 |
| regulation of gene expression | 1 |
| regulation of RNA biosynthetic process | 1 |
| cis-regulatory region sequence-specific DNA binding | 1 |
| chromatin | 1 |
| DNA-binding transcription factor activity | 1 |
| regulation of transcription by RNA polymerase II | 1 |
| transition metal ion binding | 1 |
| nucleic acid binding | 1 |
| binding | 1 |
| cation binding | 1 |
| intracellular membrane-bounded organelle | 1 |
Protein interactions and networks
STRING
226 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ZNF699 | RNH1 | P13489 | 687 |
| ZNF699 | ANG | P03950 | 544 |
| ZNF699 | AGT | P01019 | 507 |
| ZNF699 | OR7G1 | Q8NGA0 | 434 |
| ZNF699 | KMT2D | O14686 | 403 |
| ZNF699 | REN | P00797 | 401 |
| ZNF699 | ARL6IP5 | O75915 | 377 |
| ZNF699 | OR4D6 | Q8NGJ1 | 358 |
| ZNF699 | RNASE1 | P07998 | 355 |
| ZNF699 | OR8B8 | Q15620 | 350 |
| ZNF699 | GABRA2 | P47869 | 298 |
| ZNF699 | AKAP14 | Q86UN6 | 284 |
| ZNF699 | TAS2R16 | Q9NYV7 | 276 |
| ZNF699 | K7ERQ8 | K7ERQ8 | 271 |
| ZNF699 | TRIM49 | P0CI25 | 269 |
IntAct
26 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| ZNF699 | KRTAP10-9 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ZNF699 | psi-mi:“MI:0915”(physical association) | 0.560 | |
| KRTAP10-9 | ZNF699 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SRRM4 | ZNF699 | psi-mi:“MI:0915”(physical association) | 0.560 |
| EFEMP2 | ZNF699 | psi-mi:“MI:0915”(physical association) | 0.560 |
| HEXIM2 | ZNF699 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ZNF699 | DVL3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| HRC | ZNF699 | psi-mi:“MI:0915”(physical association) | 0.560 |
| TRIM28 | ZNF320 | psi-mi:“MI:0914”(association) | 0.530 |
| DCUN1D1 | RGSL1 | psi-mi:“MI:0914”(association) | 0.350 |
| M | psi-mi:“MI:0914”(association) | 0.350 | |
| OR52B2 | PCCA | psi-mi:“MI:0914”(association) | 0.350 |
| SRRM4 | ZNF699 | psi-mi:“MI:0915”(physical association) | 0.000 |
| EFEMP2 | ZNF699 | psi-mi:“MI:0915”(physical association) | 0.000 |
| HEXIM2 | ZNF699 | psi-mi:“MI:0915”(physical association) | 0.000 |
| DVL3 | ZNF699 | psi-mi:“MI:0915”(physical association) | 0.000 |
| HRC | ZNF699 | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (14): KRTAP10-9 (Two-hybrid), KRTAP10-3 (Two-hybrid), ZNF699 (Affinity Capture-RNA), ZNF699 (Two-hybrid), ZNF699 (Two-hybrid), ZNF699 (Two-hybrid), ZNF699 (Two-hybrid), ZNF699 (Two-hybrid), ZNF699 (Positive Genetic), ZNF699 (Affinity Capture-MS), ZNF699 (Affinity Capture-MS), ZNF699 (Affinity Capture-MS), ZNF699 (Affinity Capture-MS), ZNF699 (Affinity Capture-MS)
ESM2 similar proteins: A2VDP4, A6NHJ4, O94892, P0CJ79, P17014, P17021, P17025, P17032, P17035, P18733, P51508, P51814, Q06730, Q06732, Q09FC8, Q0VGE8, Q14586, Q32M78, Q3MIS6, Q5JVG2, Q5R4K8, Q5R9S5, Q5RBQ3, Q5RCJ2, Q5RER9, Q5TYW1, Q5VIY5, Q6P560, Q6PDB4, Q6ZMW2, Q6ZN06, Q6ZNA1, Q76KX8, Q7L2R6, Q86Y25, Q8N184, Q8N823, Q8N883, Q8N8J6, Q8NEP9
Diamond homologs: A0A1W2PQL4, A0JNB1, A0JPL0, A6NK53, A6QLU5, A6QPT6, A7MBI1, A8MT65, A8MUV8, A8MWA4, B2RXC5, B4DU55, B4DX44, E9PYI1, O14628, O75346, P0CH99, P0CI00, P17014, P17030, P17032, P17098, P51786, P85977, Q02386, Q06730, Q06732, Q0VAW7, Q12901, Q13360, Q14586, Q14588, Q14590, Q16587, Q2M3X9, Q2VY69, Q32M78, Q3ZCX4, Q49AA0, Q4R6J4
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
110 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 9 |
| Likely pathogenic | 5 |
| Uncertain significance | 78 |
| Likely benign | 13 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (14)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1205835 | NM_198535.3(ZNF699):c.436_439del (p.Asp146fs) | Pathogenic |
| 1205837 | NM_198535.3(ZNF699):c.1324dup (p.Ser442fs) | Pathogenic |
| 1205838 | NM_198535.3(ZNF699):c.349dup (p.Ile117fs) | Pathogenic |
| 1205839 | NM_198535.3(ZNF699):c.51_54del (p.Asp17fs) | Pathogenic |
| 1708057 | NM_198535.3(ZNF699):c.159_166delinsTTCTTA (p.Gln53fs) | Pathogenic |
| 2584361 | NM_198535.3(ZNF699):c.1310_1311del (p.His437fs) | Pathogenic |
| 2921275 | NM_198535.3(ZNF699):c.339del (p.Cys113fs) | Pathogenic |
| 3254948 | NM_198535.3(ZNF699):c.1491_1492del (p.His497fs) | Pathogenic |
| 3387783 | NM_198535.3(ZNF699):c.535C>T (p.Gln179Ter) | Pathogenic |
| 2632595 | NM_198535.3(ZNF699):c.1100_1101del (p.Glu367fs) | Likely pathogenic |
| 2921280 | NM_198535.3(ZNF699):c.421_424del (p.Glu141fs) | Likely pathogenic |
| 3387784 | NM_198535.3(ZNF699):c.1327C>T (p.Arg443Ter) | Likely pathogenic |
| 3901835 | NM_198535.3(ZNF699):c.358G>T (p.Glu120Ter) | Likely pathogenic |
| 3901836 | NM_198535.3(ZNF699):c.826A>T (p.Lys276Ter) | Likely pathogenic |
SpliceAI
544 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 19:9296929:GATTT:G | acceptor_gain | 1.0000 |
| 19:9296931:TTT:T | acceptor_gain | 1.0000 |
| 19:9296931:TTTC:T | acceptor_loss | 1.0000 |
| 19:9296932:TT:T | acceptor_gain | 1.0000 |
| 19:9296934:C:CC | acceptor_gain | 1.0000 |
| 19:9296935:T:C | acceptor_gain | 1.0000 |
| 19:9296936:T:C | acceptor_gain | 1.0000 |
| 19:9296937:T:C | acceptor_gain | 1.0000 |
| 19:9296937:T:TC | acceptor_gain | 1.0000 |
| 19:9297291:CTCA:C | donor_loss | 1.0000 |
| 19:9297292:TCA:T | donor_loss | 1.0000 |
| 19:9297293:CA:C | donor_loss | 1.0000 |
| 19:9297294:A:AT | donor_loss | 1.0000 |
| 19:9297480:C:CC | acceptor_gain | 1.0000 |
| 19:9297480:CTGA:C | acceptor_loss | 1.0000 |
| 19:9297481:T:C | acceptor_loss | 1.0000 |
| 19:9297486:C:CT | acceptor_gain | 1.0000 |
| 19:9297865:C:CA | donor_gain | 1.0000 |
| 19:9297882:T:TA | donor_gain | 1.0000 |
| 19:9297883:C:A | donor_gain | 1.0000 |
| 19:9297893:T:A | donor_gain | 1.0000 |
| 19:9297894:C:CA | donor_gain | 1.0000 |
| 19:9302372:TCTTA:T | donor_loss | 1.0000 |
| 19:9302373:CTTAC:C | donor_loss | 1.0000 |
| 19:9302374:TTACC:T | donor_loss | 1.0000 |
| 19:9302375:TACC:T | donor_loss | 1.0000 |
| 19:9302376:A:AC | donor_gain | 1.0000 |
| 19:9302376:A:AG | donor_loss | 1.0000 |
| 19:9302377:C:A | donor_loss | 1.0000 |
| 19:9302377:C:CC | donor_gain | 1.0000 |
AlphaMissense
4295 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 19:9296372:A:C | F344L | 0.999 |
| 19:9296372:A:T | F344L | 0.999 |
| 19:9296374:A:G | F344L | 0.999 |
| 19:9296288:G:C | F372L | 0.998 |
| 19:9296288:G:T | F372L | 0.998 |
| 19:9296290:A:G | F372L | 0.998 |
| 19:9296355:A:G | L350P | 0.998 |
| 19:9296456:G:C | F316L | 0.998 |
| 19:9296456:G:T | F316L | 0.998 |
| 19:9296458:A:G | F316L | 0.998 |
| 19:9295700:A:C | F568L | 0.995 |
| 19:9295700:A:T | F568L | 0.995 |
| 19:9295702:A:G | F568L | 0.995 |
| 19:9296368:A:G | S346P | 0.994 |
| 19:9296373:A:G | F344S | 0.994 |
| 19:9295616:G:C | F596L | 0.993 |
| 19:9295616:G:T | F596L | 0.993 |
| 19:9295618:A:G | F596L | 0.993 |
| 19:9295784:A:C | F540L | 0.993 |
| 19:9295784:A:T | F540L | 0.993 |
| 19:9295786:A:G | F540L | 0.993 |
| 19:9296339:T:A | R355S | 0.993 |
| 19:9296339:T:G | R355S | 0.993 |
| 19:9296271:A:G | L378P | 0.992 |
| 19:9296345:A:C | H353Q | 0.992 |
| 19:9296345:A:T | H353Q | 0.992 |
| 19:9296431:G:C | H325D | 0.992 |
| 19:9296439:A:G | L322P | 0.992 |
| 19:9296429:G:C | H325Q | 0.991 |
| 19:9296429:G:T | H325Q | 0.991 |
dbSNP variants (sampled 300 via entrez): RS1000177678 (19:9301403 A>G), RS1000316447 (19:9307144 T>C), RS1000535525 (19:9309319 C>G), RS1000541152 (19:9294446 A>G), RS1000651569 (19:9308965 C>T), RS1000853375 (19:9301136 AAAGAG>A), RS1000908177 (19:9302922 A>C), RS1001146129 (19:9303301 C>G), RS1001250650 (19:9298328 C>G,T), RS1001362021 (19:9293800 A>AT), RS1001457228 (19:9300337 C>G), RS1001639952 (19:9290901 A>T), RS1001886958 (19:9304464 A>G), RS1002214660 (19:9310362 A>T), RS1002329022 (19:9310105 A>G)
Disease associations
OMIM: gene MIM:609571 | disease phenotypes: MIM:619488, MIM:105650
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| DEGCAGS syndrome | Strong | Autosomal recessive |
Mondo (2): DEGCAGS syndrome (MONDO:0859181), Diamond-Blackfan anemia (MONDO:0015253)
Orphanet (1): Diamond-Blackfan anemia (Orphanet:124)
HPO phenotypes
125 total (30 of 125 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000010 | Recurrent urinary tract infections |
| HP:0000028 | Cryptorchidism |
| HP:0000041 | Chordee |
| HP:0000047 | Hypospadias |
| HP:0000062 | Ambiguous genitalia |
| HP:0000089 | Renal hypoplasia |
| HP:0000154 | Wide mouth |
| HP:0000218 | High palate |
| HP:0000252 | Microcephaly |
| HP:0000278 | Retrognathia |
| HP:0000280 | Coarse facial features |
| HP:0000294 | Low anterior hairline |
| HP:0000316 | Hypertelorism |
| HP:0000319 | Smooth philtrum |
| HP:0000325 | Triangular face |
| HP:0000343 | Long philtrum |
| HP:0000347 | Micrognathia |
| HP:0000358 | Posteriorly rotated ears |
| HP:0000365 | Hearing impairment |
| HP:0000369 | Low-set ears |
| HP:0000400 | Macrotia |
| HP:0000407 | Sensorineural hearing impairment |
| HP:0000426 | Prominent nasal bridge |
| HP:0000448 | Prominent nose |
| HP:0000463 | Anteverted nares |
| HP:0000499 | Abnormal eyelash morphology |
| HP:0000508 | Ptosis |
| HP:0000512 | Abnormal electroretinogram |
| HP:0000520 | Proptosis |
GWAS associations
0 associations (top):
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D029503 | Anemia, Diamond-Blackfan | C15.378.050.085.080.090; C15.378.050.750.500; C15.378.190.223.500.500.090; C16.320.077.090 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
24 total (human), top 24 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | affects cotreatment, increases abundance, increases expression | 2 |
| Air Pollutants | increases expression, affects cotreatment, decreases expression, increases abundance | 2 |
| 3-((6-(2-methoxyphenyl)pyrimidin-4-yl)amino)phenyl)methane sulfonamide | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| alpha-pinene | decreases expression, increases abundance, affects cotreatment | 1 |
| decabromobiphenyl ether | affects expression | 1 |
| arsenite | affects binding, decreases reaction | 1 |
| manganese chloride | increases expression, affects cotreatment, increases abundance | 1 |
| nickel sulfate | increases expression | 1 |
| methacrylaldehyde | affects cotreatment, decreases expression, increases abundance | 1 |
| jinfukang | affects cotreatment, decreases expression | 1 |
| Resveratrol | increases expression, affects cotreatment | 1 |
| Sunitinib | increases expression | 1 |
| Acrolein | affects cotreatment, decreases expression, increases abundance | 1 |
| Arsenic | increases expression, affects cotreatment, increases abundance | 1 |
| Cisplatin | affects cotreatment, decreases expression | 1 |
| Manganese | affects cotreatment, increases abundance, increases expression | 1 |
| Ozone | affects cotreatment, decreases expression, increases abundance | 1 |
| Plant Extracts | affects cotreatment, increases expression | 1 |
| Smoke | decreases expression | 1 |
| Tobacco Smoke Pollution | increases expression | 1 |
| Vanadates | decreases expression | 1 |
| Particulate Matter | increases abundance, increases expression | 1 |
| Volatile Organic Compounds | affects cotreatment, decreases expression | 1 |
Clinical trials (associated diseases)
38 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00673608 | PHASE4 | COMPLETED | Magnetic Resonance Imaging (MRI) Assessments of the Heart and Liver Iron Load in Patients With Transfusion Induced Iron Overload |
| NCT00235391 | PHASE3 | COMPLETED | Expanded Access of Deferasirox to Patients With Congenital Disorders of Red Blood Cells and Chronic Iron Overload |
| NCT00001962 | PHASE2 | TERMINATED | A Study to Determine Whether Therapy With Daclizumab Will Benefit Patients With Bone Marrow Failure |
| NCT00011505 | PHASE2 | COMPLETED | Mobilization of Stem Cells With G-CSF for Collection From Patients With Diamond-Blackfan Anemia |
| NCT00301834 | PHASE2 | COMPLETED | Alemtuzumab, Fludarabine, and Busulfan Followed By Donor Stem Cell Transplant in Treating Young Patients With Hematologic Disorders |
| NCT00957931 | PHASE2 | COMPLETED | Allo-HCT MUD for Non-malignant Red Blood Cell (RBC) Disorders: Sickle Cell, Thal, and DBA: Reduced Intensity Conditioning, Co-tx MSCs |
| NCT01529827 | PHASE2 | COMPLETED | Fludarabine Phosphate, Melphalan, and Low-Dose Total-Body Irradiation Followed by Donor Peripheral Blood Stem Cell Transplant in Treating Patients With Hematologic Malignancies |
| NCT02386267 | PHASE2 | UNKNOWN | L-leucine in Diamond Blackfan Anemia Patients |
| NCT02512679 | PHASE2 | TERMINATED | Related Hematopoietic Stem Cell Transplantation (HSCT) for Genetic Diseases of Blood Cells |
| NCT03333486 | PHASE2 | TERMINATED | Fludarabine Phosphate, Cyclophosphamide, Total Body Irradiation, and Donor Stem Cell Transplant in Treating Patients With Blood Cancer |
| NCT04099966 | PHASE2 | RECRUITING | AlloSCT for Malignant and Non-malignant Hematologic Diseases Utilizing Alpha/Beta T Cell and CD19+ B Cell Depletion |
| NCT04965597 | PHASE2 | COMPLETED | Treosulfan-Based Conditioning Regimen Before a Blood or Bone Marrow Transplant for the Treatment of Bone Marrow Failure Diseases (BMT CTN 1904) |
| NCT01586455 | PHASE1 | COMPLETED | Human Placental-Derived Stem Cell Transplantation |
| NCT01917708 | PHASE1 | COMPLETED | Bone Marrow Transplant With Abatacept for Non-Malignant Diseases |
| NCT00176852 | PHASE2/PHASE3 | COMPLETED | Stem Cell Transplant for Hemoglobinopathy |
| NCT00176878 | PHASE2/PHASE3 | COMPLETED | Stem Cell Transplant for Bone Marrow Failure Syndromes |
| NCT00305708 | PHASE1/PHASE2 | COMPLETED | Busulfan, Antithymocyte Globulin, and Fludarabine Followed By a Donor Stem Cell Transplant in Treating Young Patients With Blood Disorders, Bone Marrow Disorders, Chronic Myelogenous Leukemia in First Chronic Phase, or Acute Myeloid Leukemia in First Remission |
| NCT01362595 | PHASE1/PHASE2 | COMPLETED | Pilot Phase I/II Study of Amino Acid Leucine in Treatment of Patients With Transfusion-Dependent Diamond Blackfan Anemia |
| NCT01419704 | PHASE1/PHASE2 | WITHDRAWN | Phase I/II Pilot Study of Mixed Chimerism to Treat Hemoglobinopathies |
| NCT01464164 | PHASE1/PHASE2 | TERMINATED | Safety and Efficacy Study of Sotatercept in Adults With Transfusion Dependent Diamond Blackfan Anemia |
| NCT01966367 | PHASE1/PHASE2 | ACTIVE_NOT_RECRUITING | CD34+ (Non-Malignant) Stem Cell Selection for Patients Receiving Allogeneic Stem Cell Transplantation |
| NCT02065869 | PHASE1/PHASE2 | TERMINATED | Safety Study of Gene Modified Donor T-cells Following TCRαβ+ Depleted Stem Cell Transplant |
| NCT03513328 | PHASE1/PHASE2 | COMPLETED | Conditioning Regimen for Allogeneic Hematopoietic Stem-Cell Transplantation |
| NCT03653338 | PHASE1/PHASE2 | RECRUITING | T-Cell Depleted Alternative Donor Bone Marrow Transplant for Sickle Cell Disease (SCD) and Other Anemias |
| NCT03733249 | PHASE1/PHASE2 | TERMINATED | Long Term Follow-up Study for Patients Enrolled on the BP-004 Clinical Study |
| NCT03966053 | PHASE1/PHASE2 | TERMINATED | The Use of Trifluoperazine in Transfusion Dependent DBA |
| NCT00027274 | Not specified | RECRUITING | Cancer in Inherited Bone Marrow Failure Syndromes |
| NCT00244010 | Not specified | COMPLETED | Partially Matched Stem Cell Transplantation for Patients With Refractory Severe Aplastic Anemia or Refractory Cytopenias |
| NCT00290628 | Not specified | TERMINATED | Donor Umbilical Cord Blood Transplant in Treating Patients With Hematologic Cancer |
| NCT01114776 | Not specified | COMPLETED | Multi-Center Study of Iron Overload: Pilot Study |
| NCT01319851 | Not specified | TERMINATED | Alefacept and Allogeneic Hematopoietic Stem Cell Transplantation |
| NCT01758042 | Not specified | COMPLETED | Bone Marrow and Kidney Transplant for Patients With Chronic Kidney Disease and Blood Disorders |
| NCT01913548 | Not specified | COMPLETED | Multi-Center Study of Iron Overload: Survey Study (MCSIO) |
| NCT02179359 | Not specified | TERMINATED | Hematopoietic Stem Cell Transplant for High Risk Hemoglobinopathies |
| NCT02720679 | Not specified | RECRUITING | Investigation of the Genetics of Hematologic Diseases |
| NCT03050268 | Not specified | RECRUITING | Familial Investigations of Childhood Cancer Predisposition |
| NCT05687474 | Not specified | COMPLETED | Baby Detect : Genomic Newborn Screening |
| NCT07186179 | Not specified | RECRUITING | Mobilization of CD34+ Peripheral Blood Stem Cells in Patients With Diamond Blackfan Anemia Syndrome (DBAS) |
Related Atlas pages
- Associated diseases: DEGCAGS syndrome
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): DEGCAGS syndrome, Diamond-Blackfan anemia