ZNF750
geneOn this page
Also known as FLJ13841Zfp750
Summary
ZNF750 (zinc finger protein 750, HGNC:25843) is a protein-coding gene on chromosome 17q25.3, encoding Zinc finger protein 750 (Q32MQ0). Transcription factor involved in epidermis differentiation.
This gene encodes a protein with a nuclear localization site and a C2H2 zinc finger domain. Mutations in this gene have been associated with seborrhea-like dermatitis with psoriasiform elements.
Source: NCBI Gene 79755 — RefSeq curated summary.
At a glance
- Gene–disease (curated): seborrhea-like dermatitis with psoriasiform elements (Moderate, GenCC)
- GWAS associations: 1
- Clinical variants (ClinVar): 3 total
- Phenotypes (HPO): 5
- Cancer driver (intOGen): loss-of-function (tumor-suppressor-like) across 2 cancer types
- MANE Select transcript:
NM_024702
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:25843 |
| Approved symbol | ZNF750 |
| Name | zinc finger protein 750 |
| Location | 17q25.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ13841, Zfp750 |
| Ensembl gene | ENSG00000141579 |
| Ensembl biotype | protein_coding |
| OMIM | 610226 |
| Entrez | 79755 |
Gene structure
Transcript identifiers
Ensembl transcripts: 2 — 2 protein_coding
ENST00000269394, ENST00000572562
RefSeq mRNA: 1 — MANE Select: NM_024702
NM_024702
CCDS: CCDS11819
Canonical transcript exons
ENST00000269394 — 3 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000949894 | 82831019 | 82832636 |
| ENSE00000949895 | 82829434 | 82830877 |
| ENSE00002634919 | 82839927 | 82840022 |
Expression profiles
Bgee: expression breadth ubiquitous, 187 present calls, max score 98.42.
FANTOM5 (CAGE): breadth broad, TPM avg 4.3637 / max 607.4569, expressed in 287 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 169004 | 3.9187 | 280 |
| 169003 | 0.4450 | 166 |
Top tissues by expression
275 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| oral cavity | UBERON:0000167 | 98.42 | gold quality |
| penis | UBERON:0000989 | 98.10 | gold quality |
| gingiva | UBERON:0001828 | 97.88 | gold quality |
| pharyngeal mucosa | UBERON:0000355 | 97.86 | gold quality |
| cervix squamous epithelium | UBERON:0006922 | 97.81 | gold quality |
| gingival epithelium | UBERON:0001949 | 97.70 | gold quality |
| upper leg skin | UBERON:0004262 | 97.39 | gold quality |
| mammalian vulva | UBERON:0000997 | 97.08 | gold quality |
| upper arm skin | UBERON:0004263 | 97.02 | gold quality |
| skin of abdomen | UBERON:0001416 | 96.74 | gold quality |
| skin of leg | UBERON:0001511 | 96.58 | gold quality |
| zone of skin | UBERON:0000014 | 96.45 | gold quality |
| parotid gland | UBERON:0001831 | 95.42 | gold quality |
| tongue squamous epithelium | UBERON:0006919 | 95.41 | gold quality |
| cervix epithelium | UBERON:0004801 | 95.40 | gold quality |
| esophagus mucosa | UBERON:0002469 | 94.99 | gold quality |
| nipple | UBERON:0002030 | 94.83 | gold quality |
| skin of hip | UBERON:0001554 | 94.62 | gold quality |
| squamous epithelium | UBERON:0006914 | 94.43 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 93.69 | gold quality |
| body of tongue | UBERON:0011876 | 92.77 | gold quality |
| epithelium of esophagus | UBERON:0001976 | 92.54 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 92.37 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 91.26 | gold quality |
| tongue | UBERON:0001723 | 90.47 | gold quality |
| palpebral conjunctiva | UBERON:0001812 | 89.56 | gold quality |
| superior surface of tongue | UBERON:0007371 | 86.74 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 86.10 | gold quality |
| nasal cavity mucosa | UBERON:0001826 | 86.05 | gold quality |
| saliva-secreting gland | UBERON:0001044 | 85.96 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-CURD-114 | yes | 127.05 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: yes
Downstream targets (CollecTRI)
1 targets.
| Target | Regulation |
|---|---|
| SNAI1 | Repression |
Upstream regulators (CollecTRI, top): KLF4, TP63
miRNA regulators (miRDB)
59 targeting ZNF750, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-6867-5P | 100.00 | 82.21 | 3464 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-4533 | 100.00 | 69.48 | 2758 |
| HSA-MIR-4789-3P | 99.99 | 70.75 | 2484 |
| HSA-MIR-8068 | 99.98 | 73.85 | 2376 |
| HSA-MIR-4715-3P | 99.98 | 66.03 | 670 |
| HSA-MIR-568 | 99.98 | 69.86 | 2084 |
| HSA-MIR-4803 | 99.98 | 71.99 | 3117 |
| HSA-MIR-548AJ-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-548X-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-548J-3P | 99.94 | 72.61 | 4881 |
| HSA-MIR-651-3P | 99.94 | 73.48 | 5177 |
| HSA-MIR-548AE-3P | 99.93 | 72.66 | 4867 |
| HSA-MIR-548AH-3P | 99.93 | 72.54 | 4872 |
| HSA-MIR-548AM-3P | 99.93 | 72.54 | 4872 |
| HSA-MIR-548AQ-3P | 99.93 | 72.66 | 4867 |
| HSA-MIR-3143 | 99.93 | 71.96 | 3104 |
| HSA-MIR-153-5P | 99.89 | 73.86 | 6317 |
| HSA-MIR-4496 | 99.88 | 68.89 | 2236 |
| HSA-MIR-30A-3P | 99.87 | 69.74 | 2928 |
| HSA-MIR-30D-3P | 99.87 | 69.92 | 2917 |
| HSA-MIR-30E-3P | 99.87 | 69.68 | 2942 |
| HSA-MIR-548AR-3P | 99.85 | 71.26 | 3889 |
| HSA-MIR-548AZ-3P | 99.82 | 70.56 | 3549 |
| HSA-MIR-548BC | 99.82 | 70.61 | 3524 |
| HSA-MIR-548E-3P | 99.82 | 70.59 | 3514 |
| HSA-MIR-548F-3P | 99.82 | 70.59 | 3540 |
| HSA-MIR-548A-3P | 99.76 | 70.58 | 3524 |
| HSA-MIR-4729 | 99.69 | 72.18 | 4233 |
| HSA-MIR-5093 | 99.67 | 69.26 | 2291 |
Literature-anchored findings (GeneRIF, showing 26)
- ZNF750 mutations could contribute to psoriasis susceptibility. (PMID:18256691)
- Two haplotypes of ZNF750 and rare 5’ regulatory variants of ZNF750 were found to be associated with psoriasis. (PMID:22185198)
- ZNF750 directly links a tissue-specifying factor, p63, to an effector of terminal differentiation, KLF4. (PMID:22364861)
- ZNF750 was specifically expressed in the epidermal suprabasal layers and its expression was augmented during differentiation, both in human skin and in-vitro, peaking in the granular layer. (PMID:22936986)
- Suggest no connection of ZNF750 variants with psoriasis or its subphenotypes. (PMID:24005976)
- ZNF750 thus controls differentiation in concert with RCOR1 and CTBP1/2 by acting with either KDM1A to repress progenitor genes or KLF4 to induce differentiation genes. (PMID:25228645)
- ZNF750 Mutation is associated with esophageal squamous cell carcinoma. (PMID:27749841)
- ZNF750 expression predicts sensitivity to CRT and can be a biomarker that reliably predicts the response of ESCC to CRT. (PMID:28558382)
- The low expression of ZNF750 was significantly associated with a poor prognosis. (PMID:29216641)
- ZNF750 acts as a potential tumor suppressor gene, and regulates tumor microenvironment. (PMID:29890464)
- The findings uncovered the critical role of N(6)-methyladenosine in nasopharyngeal carcinoma (NPC), and stressed the regulatory function of the ZNF750-FGF14 signaling axis in modulating NPC progression, which provides theoretical guidance for the clinical treatment of NPC. (PMID:30518868)
- Study revealed that ZNF750 is both necessary and sufficient for HOPX induction and propose that HOPX functions as a positive regulator of epidermal late differentiation within a p63-ZNF750-HOPX pathway to up-regulate the key proteins required for terminal epidermal differentiation, providing clarity to previous studies showing conflicting results. (PMID:30959041)
- Loss of ZNF750 expression is seen even in tumors without truncating mutations and reduced in many of the remaining ocular and cutaneous Sebaceous carcinoma. In contrast, no ZNF750 loss was detected in benign sebaceous proliferations (PMID:31148199)
- the cell cycle pathway was a key factor involved in the anti-tumor effect of ZNF750 in CAL-27 cells. (PMID:31545271)
- Novel ESCC-related gene ZNF750 as potential Prognostic biomarker and inhibits Epithelial-Mesenchymal Transition through directly depressing SNAI1 promoter in ESCC. (PMID:32042337)
- Zinc finger protein 750(ZNF750), negatively regulated by miR-17-5p, inhibits proliferation, motility and invasion of colonic cancer cells. (PMID:32246873)
- ZNF750 represses breast cancer invasion via epigenetic control of prometastatic genes. (PMID:32313225)
- ZNF750 inhibits the proliferation and invasion of melanoma cells through modulating the Wnt/b-catenin signaling pathway. (PMID:33185885)
- Identification of calmodulin-like protein 5 as tumor-suppressor gene silenced during early stage of carcinogenesis in squamous cell carcinoma of uterine cervix. (PMID:33997976)
- Resveratrol suppresses malignant progression of oral squamous cell carcinoma cells by inducing the ZNF750/RAC1 signaling pathway. (PMID:34176441)
- PAX6 upstream antisense RNA (PAUPAR) inhibits colorectal cancer progression through modulation of the microRNA (miR)-17-5p / zinc finger protein 750 (ZNF750) axis. (PMID:34288812)
- Biased expression of mutant alleles in cancer-related genes in esophageal squamous cell carcinoma. (PMID:35013873)
- ZNF750 facilitates carcinogenesis via promoting the expression of long non-coding RNA CYTOR and influences pharmacotherapy response in colon adenocarcinoma. (PMID:35794688)
- ZNF750: A Novel Prognostic Biomarker in Metastatic Prostate Cancer. (PMID:37047491)
- The GRHL3-regulated long non-coding RNA lnc-DC modulates keratinocytes differentiation by interacting with IGF2BP2 and up-regulating ZNF750. (PMID:38383230)
- The transcription regulators ZNF750 and LSD1/KDM1A dampen inflammation on the skin’s surface by silencing pattern recognition receptors. (PMID:39353440)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | znf750 | ENSDARG00000102267 |
| mus_musculus | Zfp750 | ENSMUSG00000039238 |
| rattus_norvegicus | Znf750 | ENSRNOG00000046482 |
Paralogs (2): PRR35 (ENSG00000161992), NHLRC4 (ENSG00000257108)
Protein
Protein identifiers
Zinc finger protein 750 — Q32MQ0 (reviewed: Q32MQ0)
All UniProt accessions (2): Q32MQ0, I3L0W7
UniProt curated annotations — full annotation on UniProt →
Function. Transcription factor involved in epidermis differentiation. Required for terminal epidermal differentiation: acts downstream of p63/TP63 and activates expression of late epidermal differentiation genes. Specifically binds to the promoter of KLF4 and promotes its expression.
Subcellular location. Nucleus.
Tissue specificity. Expressed in the skin, prostate, lung, placenta and thymus, and at low level in T-cells. Not expressed in peripheral blood leukocytes, pancreas and brain. Clearly expressed in primary keratinocytes but not in fibroblasts.
Disease relevance. Seborrhea-like dermatitis with psoriasiform elements (SLDP) [MIM:610227] Characterized by a chronic fine diffuse scaly erythematous rash on the face, particularly on the chin, nasolabial folds and eyebrows, around earlobes and over the scalp. The rash exacerbate in the winter, with emotional stress and after strenuous physical activity. Hyperkeratosis of skin over the elbows, knees, palms, soles and metacarpophalangeal joints is evident. There is no arthralgia, arthritis or neurological disorders. The disease is caused by variants affecting the gene represented in this entry.
Induction. During epidermal differentiation: expression is activated by p63/TP63.
RefSeq proteins (1): NP_078978* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR039064 | ZNF750_Znf | Domain |
| IPR039363 | ZNF750 | Family |
Pfam: PF15269
UniProt features (31 total): compositionally biased region 9, region of interest 5, mutagenesis site 5, binding site 4, sequence variant 3, chain 1, zinc finger region 1, sequence conflict 1, turn 1, helix 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 8SXM | SOLUTION NMR |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q32MQ0-F1 | 48.31 | 0.02 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (4): 27; 30; 43; 49
Mutagenesis-validated functional residues (5):
| Position | Phenotype |
|---|---|
| 27 | abolishes the ability to induce epidermal terminal differentiation; when associated with a-30. |
| 30 | abolishes the ability to induce epidermal terminal differentiation; when associated with a-27. |
| 34 | retains the ability to bind zinc; when associated with a-39. |
| 39 | abolishes the ability to induce epidermal terminal differentiation; when associated with a-43. retains the ability to bi |
| 43 | abolishes the ability to induce epidermal terminal differentiation; when associated with a-39. |
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-212436 | Generic Transcription Pathway |
MSigDB gene sets: 110 (showing top):
JAEGER_METASTASIS_DN, PEREZ_TP63_TARGETS, GOBP_NEGATIVE_REGULATION_OF_EPITHELIAL_TO_MESENCHYMAL_TRANSITION, RICKMAN_METASTASIS_DN, GOBP_NEGATIVE_REGULATION_OF_MULTICELLULAR_ORGANISMAL_PROCESS, RICKMAN_TUMOR_DIFFERENTIATED_WELL_VS_POORLY_DN, GOBP_MESENCHYMAL_CELL_DIFFERENTIATION, SHEDDEN_LUNG_CANCER_GOOD_SURVIVAL_A4, GOBP_EPIDERMIS_DEVELOPMENT, PEREZ_TP53_AND_TP63_TARGETS, GOBP_NEGATIVE_REGULATION_OF_DEVELOPMENTAL_PROCESS, GOBP_MESENCHYME_DEVELOPMENT, NIKOLSKY_BREAST_CANCER_17Q21_Q25_AMPLICON, GOBP_REGULATION_OF_EPITHELIAL_TO_MESENCHYMAL_TRANSITION, GOMF_CHROMATIN_BINDING
GO Biological Process (10): negative regulation of transcription by RNA polymerase II (GO:0000122), regulation of transcription by RNA polymerase II (GO:0006357), epidermis development (GO:0008544), positive regulation of gene expression (GO:0010628), negative regulation of epithelial to mesenchymal transition (GO:0010719), cell differentiation (GO:0030154), membrane biogenesis (GO:0044091), positive regulation of transcription by RNA polymerase II (GO:0045944), establishment of skin barrier (GO:0061436), positive regulation of ceramide biosynthetic process (GO:2000304)
GO Molecular Function (7): RNA polymerase II cis-regulatory region sequence-specific DNA binding (GO:0000978), DNA-binding transcription repressor activity, RNA polymerase II-specific (GO:0001227), DNA-binding transcription activator activity, RNA polymerase II-specific (GO:0001228), zinc ion binding (GO:0008270), promoter-specific chromatin binding (GO:1990841), protein binding (GO:0005515), metal ion binding (GO:0046872)
GO Cellular Component (1): nucleus (GO:0005634)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| RNA Polymerase II Transcription | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| transcription by RNA polymerase II | 3 |
| RNA polymerase II transcription regulatory region sequence-specific DNA binding | 3 |
| regulation of transcription by RNA polymerase II | 2 |
| DNA-binding transcription factor activity, RNA polymerase II-specific | 2 |
| negative regulation of DNA-templated transcription | 1 |
| regulation of DNA-templated transcription | 1 |
| tissue development | 1 |
| gene expression | 1 |
| regulation of gene expression | 1 |
| positive regulation of macromolecule biosynthetic process | 1 |
| epithelial to mesenchymal transition | 1 |
| regulation of epithelial to mesenchymal transition | 1 |
| negative regulation of cell differentiation | 1 |
| negative regulation of multicellular organismal process | 1 |
| cellular developmental process | 1 |
| cellular component biogenesis | 1 |
| positive regulation of DNA-templated transcription | 1 |
| skin epidermis development | 1 |
| ceramide biosynthetic process | 1 |
| positive regulation of sphingolipid biosynthetic process | 1 |
| regulation of ceramide biosynthetic process | 1 |
| cis-regulatory region sequence-specific DNA binding | 1 |
| negative regulation of transcription by RNA polymerase II | 1 |
| DNA-binding transcription repressor activity | 1 |
| DNA-binding transcription activator activity | 1 |
| positive regulation of transcription by RNA polymerase II | 1 |
| transition metal ion binding | 1 |
| chromatin binding | 1 |
| binding | 1 |
| cation binding | 1 |
| intracellular membrane-bounded organelle | 1 |
Protein interactions and networks
STRING
846 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ZNF750 | KLF4 | P78338 | 854 |
| ZNF750 | CTBP1 | Q13363 | 705 |
| ZNF750 | KDM1A | O60341 | 672 |
| ZNF750 | RCOR1 | Q9UKL0 | 663 |
| ZNF750 | GRHL3 | Q8TE85 | 659 |
| ZNF750 | CARD14 | Q9BXL6 | 591 |
| ZNF750 | FAT1 | Q14517 | 552 |
| ZNF750 | FAT2 | Q9NYQ8 | 524 |
| ZNF750 | KMT2D | O14686 | 481 |
| ZNF750 | TP63 | Q9H3D4 | 480 |
| ZNF750 | HDAC1 | Q13547 | 475 |
| ZNF750 | NOTCH1 | P46531 | 473 |
| ZNF750 | MPZL3 | Q6UWV2 | 473 |
| ZNF750 | OVOL1 | O14753 | 462 |
| ZNF750 | FAM135B | Q49AJ0 | 450 |
IntAct
4 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CTBP2 | ZNF750 | psi-mi:“MI:0915”(physical association) | 0.560 |
BioGRID (48): ZNF750 (Two-hybrid), RCOR1 (Affinity Capture-MS), KDM1A (Affinity Capture-MS), CTBP1 (Affinity Capture-MS), CTBP2 (Affinity Capture-MS), RBBP7 (Affinity Capture-MS), CBX3 (Affinity Capture-MS), HDAC1 (Affinity Capture-MS), ZNF516 (Affinity Capture-MS), KLF4 (Affinity Capture-MS), TFAP2A (Affinity Capture-MS), CNOT1 (Affinity Capture-MS), TARDBP (Affinity Capture-MS), ZNF185 (Affinity Capture-MS), PRC1 (Affinity Capture-MS)
ESM2 similar proteins: A2VDR9, A5PKG8, A6NMT0, A7MB40, A8MUI8, E2R9X2, O00257, O15353, O43151, O55187, P19419, P30658, P48382, P52950, P59598, Q03989, Q0GGX2, Q13029, Q14781, Q28BT7, Q2MHN3, Q32MQ0, Q32N19, Q3SWY1, Q3TEI4, Q3U108, Q3UHR0, Q497V6, Q568E2, Q571I4, Q5JPB2, Q5NSW5, Q5TGY3, Q61818, Q6PAL7, Q6ZRI6, Q7TSH3, Q7Z5J4, Q811R2, Q86YN6
Diamond homologs: A2VDR9, P0CG20, Q28BT7, Q32MQ0, Q32N19, Q568E2, Q8BH05
SIGNOR signaling
0 interactions.
Disease & clinical
Cancer significance
From intOGen — cancer-driver classification: loss-of-function (tumor-suppressor-like) across 2 cancer types — ESCA, LUSC.
Clinical variants and AI predictions
ClinVar
3 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 2 |
| Likely benign | 1 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
575 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 17:82830873:TGAGG:T | acceptor_gain | 0.9900 |
| 17:82830876:GG:G | acceptor_gain | 0.9900 |
| 17:82830878:C:CC | acceptor_gain | 0.9900 |
| 17:82833513:AAAT:A | acceptor_gain | 0.9900 |
| 17:82833514:A:C | donor_gain | 0.9900 |
| 17:82833516:T:TA | acceptor_gain | 0.9900 |
| 17:82833546:T:TA | donor_gain | 0.9900 |
| 17:82839923:TTA:T | donor_loss | 0.9900 |
| 17:82839924:TAC:T | donor_loss | 0.9900 |
| 17:82839925:ACCA:A | donor_loss | 0.9900 |
| 17:82839926:C:CG | donor_gain | 0.9900 |
| 17:82839926:CCAGA:C | donor_gain | 0.9900 |
| 17:82830874:GAGGC:G | acceptor_loss | 0.9800 |
| 17:82830875:AGGCT:A | acceptor_loss | 0.9800 |
| 17:82830877:GC:G | acceptor_loss | 0.9800 |
| 17:82830878:CTA:C | acceptor_loss | 0.9800 |
| 17:82830879:T:G | acceptor_loss | 0.9800 |
| 17:82832637:C:CC | acceptor_gain | 0.9800 |
| 17:82833526:A:AC | donor_gain | 0.9800 |
| 17:82833527:C:CC | donor_gain | 0.9800 |
| 17:82839925:A:AC | donor_gain | 0.9800 |
| 17:82839926:CCA:C | donor_gain | 0.9800 |
| 17:82839926:CCAG:C | donor_gain | 0.9800 |
| 17:82830874:GAGG:G | acceptor_gain | 0.9700 |
| 17:82831018:CCTTA:C | donor_gain | 0.9700 |
| 17:82832632:GGGAG:G | acceptor_gain | 0.9700 |
| 17:82839925:AC:A | donor_gain | 0.9700 |
| 17:82839926:CC:C | donor_gain | 0.9700 |
| 17:82830875:AGG:A | acceptor_gain | 0.9600 |
| 17:82831022:A:AC | donor_gain | 0.9600 |
AlphaMissense
4674 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 17:82832328:G:C | H43D | 1.000 |
| 17:82832340:G:C | H39D | 1.000 |
| 17:82832359:A:C | F32L | 1.000 |
| 17:82832359:A:T | F32L | 1.000 |
| 17:82832361:A:G | F32L | 1.000 |
| 17:82832367:A:G | C30R | 1.000 |
| 17:82832371:G:C | F28L | 1.000 |
| 17:82832371:G:T | F28L | 1.000 |
| 17:82832373:A:G | F28L | 1.000 |
| 17:82832374:A:C | C27W | 1.000 |
| 17:82832375:C:G | C27S | 1.000 |
| 17:82832376:A:G | C27R | 1.000 |
| 17:82832376:A:T | C27S | 1.000 |
| 17:82832405:C:A | R17M | 1.000 |
| 17:82832310:A:G | C49R | 0.999 |
| 17:82832320:C:A | K45N | 0.999 |
| 17:82832320:C:G | K45N | 0.999 |
| 17:82832322:T:C | K45E | 0.999 |
| 17:82832326:G:C | H43Q | 0.999 |
| 17:82832326:G:T | H43Q | 0.999 |
| 17:82832327:T:G | H43P | 0.999 |
| 17:82832328:G:T | H43N | 0.999 |
| 17:82832329:A:C | N42K | 0.999 |
| 17:82832329:A:T | N42K | 0.999 |
| 17:82832332:A:C | F41L | 0.999 |
| 17:82832332:A:T | F41L | 0.999 |
| 17:82832333:A:G | F41S | 0.999 |
| 17:82832334:A:G | F41L | 0.999 |
| 17:82832336:A:G | L40P | 0.999 |
| 17:82832338:A:C | H39Q | 0.999 |
dbSNP variants (sampled 300 via entrez): RS1000038308 (17:82834915 G>A), RS1000431591 (17:82829630 G>A), RS1000823849 (17:82838364 G>A), RS1000874720 (17:82838542 A>G), RS1000968951 (17:82838773 A>G), RS1001042710 (17:82833619 C>T), RS1001054555 (17:82838582 C>G), RS1001477834 (17:82833374 G>A), RS1001537893 (17:82836371 T>G), RS1001791048 (17:82831415 G>C,T), RS1002103012 (17:82838666 C>G,T), RS1002423041 (17:82829296 C>A,T), RS1002764059 (17:82838860 C>T), RS1003105439 (17:82831598 G>A), RS1003314043 (17:82835510 C>T)
Disease associations
OMIM: gene MIM:610226 | disease phenotypes:
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| seborrhea-like dermatitis with psoriasiform elements | Moderate | Autosomal dominant |
Mondo (1): seborrhea-like dermatitis with psoriasiform elements (MONDO:0012446)
Orphanet (0):
HPO phenotypes
5 total (5 of 5 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000962 | Hyperkeratosis |
| HP:0001051 | Seborrheic dermatitis |
| HP:0025092 | Epidermal acanthosis |
| HP:0032152 | Keratosis pilaris |
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST008358_1 | Response to cognitive-behavioural therapy in anxiety and major depressive disorders | 2.000000e-06 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0007820 | cognitive behavioural therapy |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| C565217 | Seborrhea-Like Dermatitis with Psoriasiform Elements (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
25 total (human), top 25 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, increases expression, affects expression, decreases expression, increases methylation | 10 |
| trichostatin A | affects cotreatment, increases expression | 3 |
| Tetrachlorodibenzodioxin | decreases expression, increases expression, affects cotreatment | 3 |
| mercuric bromide | affects cotreatment, increases expression | 2 |
| Panobinostat | affects cotreatment, increases expression | 2 |
| Estradiol | affects cotreatment, decreases expression, increases expression | 2 |
| Phenylmercuric Acetate | affects cotreatment, increases expression | 2 |
| p-Chloromercuribenzoic Acid | affects cotreatment, increases expression | 2 |
| sodium arsenate | increases abundance, decreases expression | 1 |
| arsenite | increases methylation | 1 |
| sodium arsenite | increases expression | 1 |
| benzo(e)pyrene | decreases methylation | 1 |
| aflatoxin B2 | decreases methylation | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| belinostat | increases expression | 1 |
| dorsomorphin | affects cotreatment, increases expression | 1 |
| 2-(1H-indazol-4-yl)-6-(4-methanesulfonylpiperazin-1-ylmethyl)-4-morpholin-4-ylthieno(3,2-d)pyrimidine | increases expression, increases response to substance | 1 |
| Vorinostat | increases expression | 1 |
| Air Pollutants | decreases expression, increases abundance | 1 |
| Arsenic | decreases expression, increases abundance | 1 |
| Coumestrol | decreases expression | 1 |
| Methapyrilene | decreases methylation | 1 |
| Tobacco Smoke Pollution | decreases expression | 1 |
| Aflatoxin B1 | decreases expression | 1 |
| Particulate Matter | decreases expression, increases abundance | 1 |
Cellosaurus cell lines
2 cell lines: 2 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_E0X2 | Ubigene KYSE-30 ZNF750 KO | Cancer cell line | Male |
| CVCL_E1LQ | HyCyte KYSE-150 KO-hZNF750 | Cancer cell line | Female |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Associated diseases: seborrhea-like dermatitis with psoriasiform elements
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): seborrhea-like dermatitis with psoriasiform elements