ZNF790-AS1

Summary

ZNF790-AS1 (ZNF790 antisense RNA 1, HGNC:27617) is a long non-coding RNA gene on chromosome 19q13.12.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:27617
Approved symbol	ZNF790-AS1
Name	ZNF790 antisense RNA 1
Location	19q13.12
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000267254
Ensembl biotype	lncRNA
Entrez	284408
RNAcentral	URS000075AC4E — lncRNA, 1068 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 14 — 14 lncRNA

ENST00000587278, ENST00000587413, ENST00000588906, ENST00000589556, ENST00000650959, ENST00000655476, ENST00000657461, ENST00000663523, ENST00000665341, ENST00000702832, ENST00000702929, ENST00000716293, ENST00000716294, ENST00000716295

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000587278 — 4 exons

Exon	Start	End
ENSE00001778939	36801876	36801933
ENSE00002752429	36827650	36828115
ENSE00002944413	36801209	36801240
ENSE00004029413	36812510	36812606

Expression profiles

Bgee: expression breadth ubiquitous, 234 present calls, max score 84.80.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 5.0607 / max 86.3499, expressed in 1308 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
175527	5.0607	1308

Top tissues by expression

249 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	84.80	gold quality
endothelial cell	CL:0000115	82.37	silver quality
calcaneal tendon	UBERON:0003701	81.78	gold quality
right uterine tube	UBERON:0001302	81.76	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.24	gold quality
cerebellar hemisphere	UBERON:0002245	81.12	gold quality
cerebellar cortex	UBERON:0002129	81.07	gold quality
tendon of biceps brachii	UBERON:0008188	81.06	gold quality
cerebellum	UBERON:0002037	80.63	gold quality
right hemisphere of cerebellum	UBERON:0014890	80.34	gold quality
tendon	UBERON:0000043	80.14	gold quality
sperm	CL:0000019	79.84	gold quality
left lobe of thyroid gland	UBERON:0001120	79.36	gold quality
thyroid gland	UBERON:0002046	79.32	gold quality
right lobe of thyroid gland	UBERON:0001119	78.69	gold quality
vena cava	UBERON:0004087	78.40	silver quality
left ovary	UBERON:0002119	78.38	gold quality
adenohypophysis	UBERON:0002196	78.36	gold quality
right ovary	UBERON:0002118	78.04	gold quality
pituitary gland	UBERON:0000007	77.74	gold quality
nucleus accumbens	UBERON:0001882	77.37	gold quality
ovary	UBERON:0000992	77.26	gold quality
body of uterus	UBERON:0009853	77.02	gold quality
cortical plate	UBERON:0005343	76.92	gold quality
ventricular zone	UBERON:0003053	76.90	gold quality
putamen	UBERON:0001874	76.78	gold quality
tibial artery	UBERON:0007610	76.63	gold quality
popliteal artery	UBERON:0002250	76.62	gold quality
caudate nucleus	UBERON:0001873	76.54	gold quality
amygdala	UBERON:0001876	76.42	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	4.40

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.