ZSCAN5A-AS1

Summary

ZSCAN5A-AS1 (ZSCAN5A antisense RNA 1, HGNC:55294) is a long non-coding RNA gene on chromosome 19q13.43.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55294
Approved symbol	ZSCAN5A-AS1
Name	ZSCAN5A antisense RNA 1
Location	19q13.43
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000267549
Ensembl biotype	lncRNA
Entrez	112268243
RNAcentral	URS00026A2871 — lncRNA, 902 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000587004, ENST00000587448, ENST00000587620, ENST00000651636, ENST00000799011

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000587004 — 3 exons

Exon	Start	End
ENSE00002855192	56314703	56314986
ENSE00002872686	56338305	56338505
ENSE00002917717	56340786	56341287

Expression profiles

Bgee: expression breadth ubiquitous, 148 present calls, max score 81.90.

Top tissues by expression

237 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	81.90	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	79.98	gold quality
sural nerve	UBERON:0015488	74.16	gold quality
bone marrow cell	CL:0002092	67.40	silver quality
left testis	UBERON:0004533	66.48	gold quality
right testis	UBERON:0004534	66.20	gold quality
cortical plate	UBERON:0005343	66.10	gold quality
testis	UBERON:0000473	65.31	gold quality
buccal mucosa cell	CL:0002336	63.47	silver quality
right uterine tube	UBERON:0001302	61.93	gold quality
ventricular zone	UBERON:0003053	60.91	gold quality
islet of Langerhans	UBERON:0000006	58.01	gold quality
adenohypophysis	UBERON:0002196	57.96	gold quality
pituitary gland	UBERON:0000007	57.60	gold quality
hindlimb stylopod muscle	UBERON:0004252	57.41	gold quality
leukocyte	CL:0000738	56.85	gold quality
monocyte	CL:0000576	56.57	gold quality
granulocyte	CL:0000094	56.03	gold quality
ganglionic eminence	UBERON:0004023	55.91	silver quality
fallopian tube	UBERON:0003889	55.11	gold quality
right atrium auricular region	UBERON:0006631	54.35	gold quality
cardiac atrium	UBERON:0002081	53.96	gold quality
calcaneal tendon	UBERON:0003701	53.18	gold quality
prefrontal cortex	UBERON:0000451	53.09	gold quality
endometrium	UBERON:0001295	52.89	gold quality
nucleus accumbens	UBERON:0001882	52.47	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	51.66	gold quality
pancreas	UBERON:0001264	51.59	gold quality
stromal cell of endometrium	CL:0002255	51.46	silver quality
caudate nucleus	UBERON:0001873	51.21	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	4.39

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.