ZZEF1
gene geneOn this page
Also known as KIAA0399ZZZ4FLJ10821
Summary
ZZEF1 (zinc finger ZZ-type and EF-hand domain containing 1, HGNC:29027) is a protein-coding gene on chromosome 17p13.2, encoding Zinc finger ZZ-type and EF-hand domain-containing protein 1 (O43149). Histone H3 reader which may act as a transcriptional coactivator for KLF6 and KLF9 transcription factors.
Enables histone reader activity; lysine-acetylated histone binding activity; and methylated histone binding activity. Predicted to act upstream of or within several processes, including glutamatergic synaptic transmission; regulation of peptidyl-tyrosine phosphorylation; and visual learning. Predicted to be located in cell surface; postsynapse; and presynaptic active zone.
Source: NCBI Gene 23140 — RefSeq curated summary.
At a glance
- GWAS associations: 18
- Clinical variants (ClinVar): 512 total
- MANE Select transcript:
NM_015113
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:29027 |
| Approved symbol | ZZEF1 |
| Name | zinc finger ZZ-type and EF-hand domain containing 1 |
| Location | 17p13.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | KIAA0399, ZZZ4, FLJ10821 |
| Ensembl gene | ENSG00000074755 |
| Ensembl biotype | protein_coding |
| OMIM | 619459 |
| Entrez | 23140 |
Gene structure
Transcript identifiers
Ensembl transcripts: 12 — 5 retained_intron, 3 protein_coding, 3 nonsense_mediated_decay, 1 protein_coding_CDS_not_defined
ENST00000381638, ENST00000570365, ENST00000571436, ENST00000572426, ENST00000572699, ENST00000572831, ENST00000573183, ENST00000573536, ENST00000573606, ENST00000574474, ENST00000575428, ENST00000884567
RefSeq mRNA: 1 — MANE Select: NM_015113
NM_015113
CCDS: CCDS11043
Canonical transcript exons
ENST00000381638 — 55 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000947265 | 4009604 | 4009757 |
| ENSE00000947266 | 4008883 | 4008954 |
| ENSE00001116266 | 4022709 | 4022828 |
| ENSE00001116267 | 4070684 | 4070924 |
| ENSE00001116269 | 4072608 | 4072756 |
| ENSE00001116270 | 4075263 | 4075429 |
| ENSE00001116276 | 4076637 | 4076759 |
| ENSE00001196002 | 4074150 | 4074351 |
| ENSE00001196005 | 4075097 | 4075178 |
| ENSE00001267411 | 4082437 | 4082504 |
| ENSE00001300153 | 4004445 | 4006970 |
| ENSE00001602068 | 4019669 | 4019769 |
| ENSE00001672384 | 4021129 | 4021320 |
| ENSE00001737092 | 4017371 | 4017730 |
| ENSE00003459251 | 4112609 | 4112808 |
| ENSE00003470300 | 4032828 | 4033002 |
| ENSE00003473943 | 4077883 | 4078042 |
| ENSE00003480050 | 4059171 | 4059290 |
| ENSE00003492667 | 4104633 | 4104811 |
| ENSE00003493658 | 4056216 | 4056345 |
| ENSE00003495163 | 4090719 | 4090830 |
| ENSE00003498642 | 4054057 | 4054195 |
| ENSE00003517258 | 4017836 | 4017971 |
| ENSE00003528538 | 4042429 | 4042568 |
| ENSE00003532597 | 4049708 | 4049859 |
| ENSE00003535647 | 4024919 | 4025118 |
| ENSE00003546838 | 4087434 | 4087534 |
| ENSE00003547662 | 4057994 | 4058155 |
| ENSE00003573019 | 4085670 | 4085803 |
| ENSE00003575793 | 4116972 | 4117166 |
| ENSE00003579027 | 4013449 | 4013614 |
| ENSE00003585007 | 4123907 | 4124051 |
| ENSE00003590703 | 4096609 | 4096700 |
| ENSE00003595424 | 4014090 | 4014188 |
| ENSE00003595577 | 4102317 | 4102415 |
| ENSE00003606002 | 4105693 | 4105809 |
| ENSE00003606238 | 4044224 | 4044374 |
| ENSE00003608223 | 4066447 | 4066540 |
| ENSE00003610510 | 4095831 | 4095979 |
| ENSE00003614147 | 4062753 | 4062917 |
| ENSE00003621679 | 4050781 | 4051043 |
| ENSE00003622447 | 4114299 | 4114470 |
| ENSE00003623769 | 4086486 | 4086655 |
| ENSE00003630098 | 4109653 | 4109863 |
| ENSE00003633488 | 4051971 | 4052136 |
| ENSE00003636488 | 4142542 | 4143030 |
| ENSE00003637763 | 4088678 | 4088893 |
| ENSE00003640216 | 4032126 | 4032258 |
| ENSE00003652393 | 4014347 | 4014515 |
| ENSE00003667210 | 4081376 | 4081490 |
| ENSE00003675710 | 4067163 | 4067242 |
| ENSE00003678999 | 4034015 | 4034292 |
| ENSE00003684756 | 4064361 | 4064829 |
| ENSE00003688092 | 4016323 | 4016466 |
| ENSE00003692687 | 4076868 | 4076989 |
Expression profiles
Bgee: expression breadth ubiquitous, 285 present calls, max score 94.87.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 13.6537 / max 209.5834, expressed in 1793 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 163901 | 13.5889 | 1793 |
| 163900 | 0.0647 | 23 |
Top tissues by expression
294 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| jejunal mucosa | UBERON:0000399 | 94.87 | gold quality |
| sural nerve | UBERON:0015488 | 93.17 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 92.51 | gold quality |
| small intestine | UBERON:0002108 | 92.29 | gold quality |
| colonic epithelium | UBERON:0000397 | 92.27 | gold quality |
| ileal mucosa | UBERON:0000331 | 91.77 | gold quality |
| transverse colon | UBERON:0001157 | 91.47 | gold quality |
| mucosa of stomach | UBERON:0001199 | 91.38 | gold quality |
| jejunum | UBERON:0002115 | 91.29 | gold quality |
| colonic mucosa | UBERON:0000317 | 91.17 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 90.65 | gold quality |
| sperm | CL:0000019 | 90.55 | gold quality |
| adrenal tissue | UBERON:0018303 | 90.47 | gold quality |
| intestine | UBERON:0000160 | 90.34 | gold quality |
| duodenum | UBERON:0002114 | 90.25 | gold quality |
| tonsil | UBERON:0002372 | 90.12 | gold quality |
| rectum | UBERON:0001052 | 90.08 | gold quality |
| male germ cell | CL:0000015 | 90.03 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 89.96 | gold quality |
| lower esophagus | UBERON:0013473 | 89.93 | gold quality |
| colon | UBERON:0001155 | 89.80 | gold quality |
| large intestine | UBERON:0000059 | 89.67 | gold quality |
| blood | UBERON:0000178 | 89.31 | gold quality |
| granulocyte | CL:0000094 | 89.26 | gold quality |
| bone marrow cell | CL:0002092 | 89.24 | gold quality |
| gastrocnemius | UBERON:0001388 | 89.17 | gold quality |
| gingival epithelium | UBERON:0001949 | 89.14 | gold quality |
| body of pancreas | UBERON:0001150 | 89.08 | gold quality |
| blood vessel layer | UBERON:0004797 | 89.04 | gold quality |
| muscle of leg | UBERON:0001383 | 88.95 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 7.06 |
| E-MTAB-7606 | no | 145.02 |
| E-CURD-112 | no | 2.58 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
95 targeting ZZEF1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-4283 | 100.00 | 66.42 | 2097 |
| HSA-MIR-6793-5P | 99.97 | 65.95 | 758 |
| HSA-MIR-570-3P | 99.96 | 72.41 | 4910 |
| HSA-MIR-548AJ-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-548X-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-6778-3P | 99.96 | 67.29 | 2693 |
| HSA-LET-7C-3P | 99.95 | 73.42 | 2862 |
| HSA-MIR-548J-3P | 99.94 | 72.61 | 4881 |
| HSA-MIR-548AE-3P | 99.93 | 72.66 | 4867 |
| HSA-MIR-548AH-3P | 99.93 | 72.54 | 4872 |
| HSA-MIR-548AM-3P | 99.93 | 72.54 | 4872 |
| HSA-MIR-548AQ-3P | 99.93 | 72.66 | 4867 |
| HSA-MIR-338-5P | 99.92 | 72.34 | 2951 |
| HSA-MIR-8063 | 99.91 | 69.76 | 3146 |
| HSA-MIR-7-1-3P | 99.91 | 71.53 | 4384 |
| HSA-MIR-7-2-3P | 99.91 | 71.40 | 4394 |
| HSA-MIR-137-3P | 99.87 | 74.74 | 2401 |
| HSA-MIR-548D-3P | 99.87 | 70.67 | 4362 |
| HSA-MIR-548BB-3P | 99.86 | 70.58 | 4354 |
| HSA-MIR-548AC | 99.84 | 70.77 | 4351 |
| HSA-MIR-548H-3P | 99.84 | 70.80 | 4349 |
| HSA-MIR-548Z | 99.84 | 70.80 | 4349 |
| HSA-MIR-4698 | 99.84 | 71.41 | 4303 |
| HSA-MIR-448 | 99.79 | 72.37 | 2103 |
| HSA-MIR-6745 | 99.74 | 65.33 | 1321 |
| HSA-MIR-4524A-3P | 99.72 | 66.85 | 2406 |
| HSA-MIR-1200 | 99.71 | 70.42 | 1838 |
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | zzef1 | ENSDARG00000094380 |
| mus_musculus | Zzef1 | ENSMUSG00000055670 |
| rattus_norvegicus | Zzef1 | ENSRNOG00000024535 |
Protein
Protein identifiers
Zinc finger ZZ-type and EF-hand domain-containing protein 1 — O43149 (reviewed: O43149)
All UniProt accessions (5): O43149, I3L141, I3L1Q8, I3L2N1, I3L3Q3
UniProt curated annotations — full annotation on UniProt →
Function. Histone H3 reader which may act as a transcriptional coactivator for KLF6 and KLF9 transcription factors.
Subunit / interactions. Interacts with KLF6 and KLF9. Interacts via (ZZ-type 2 zinc finger) with histone H3 trimethylated at ‘Lys-4’ (H3K4me3) and histone H3 acetylated at ‘Lys-4’ (H3K4ac).
Tissue specificity. Expressed at low levels in cerebellum.
Miscellaneous. Incomplete sequence. May be due to an intron retention.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| O43149-1 | 1 | yes |
| O43149-2 | 2 | |
| O43149-3 | 3 |
RefSeq proteins (1): NP_055928* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000433 | Znf_ZZ | Domain |
| IPR002048 | EF_hand_dom | Domain |
| IPR004939 | APC_su10/DOC_dom | Domain |
| IPR008979 | Galactose-bd-like_sf | Homologous_superfamily |
| IPR011992 | EF-hand-dom_pair | Homologous_superfamily |
| IPR040099 | ZZEF1 | Family |
| IPR041986 | ZZEF1_ZZ | Domain |
| IPR043145 | Znf_ZZ_sf | Homologous_superfamily |
| IPR047052 | ZZEF1_APC10 | Domain |
Pfam: PF00569, PF03256
UniProt features (64 total): binding site 16, modified residue 12, sequence variant 10, splice variant 6, compositionally biased region 5, region of interest 4, domain 2, zinc finger region 2, mutagenesis site 2, sequence conflict 2, initiator methionine 1, chain 1, lipid moiety-binding region 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
No AlphaFold model available for O43149 — AlphaFold DB does not currently provide models for proteins above ~3000 aa.
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (16): 1783; 1786; 1797; 1800; 1806; 1809; 1819; 1823; 1832; 1835; 1846; 1849 …
Post-translational modifications (13): 240, 1475, 1488, 1509, 1512, 1518, 1521, 1523, 1537, 1540, 2444, 2667, 2
Mutagenesis-validated functional residues (2):
| Position | Phenotype |
|---|---|
| 1833 | loss of histone h3 binding. |
| 1853 | loss of histone h3 binding. |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 140 (showing top):
CREBP1_Q2, YY1_Q6, CREB_Q4, YY1_02, ATF4_Q2, GRYDER_PAX3FOXO1_ENHANCERS_IN_TADS, MILI_PSEUDOPODIA_CHEMOTAXIS_DN, ATF_01, TGGAAA_NFAT_Q4_01, GRYDER_PAX3FOXO1_TOP_ENHANCERS, CGTSACG_PAX3_B, SCGGAAGY_ELK1_02, GOMF_HISTONE_BINDING, AAGWWRNYGGC_UNKNOWN, CREB_Q2
GO Biological Process (0):
GO Molecular Function (5): calcium ion binding (GO:0005509), zinc ion binding (GO:0008270), histone binding (GO:0042393), protein binding (GO:0005515), metal ion binding (GO:0046872)
GO Cellular Component (0):
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| metal ion binding | 1 |
| transition metal ion binding | 1 |
| protein binding | 1 |
| binding | 1 |
| cation binding | 1 |
Protein interactions and networks
STRING
1378 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ZZEF1 | FTSJ3 | Q8IY81 | 557 |
| ZZEF1 | KATNBL1 | Q9H079 | 532 |
| ZZEF1 | MIX23 | Q4VC31 | 530 |
| ZZEF1 | C11orf86 | A6NJI1 | 522 |
| ZZEF1 | ZCCHC14 | Q8WYQ9 | 481 |
| ZZEF1 | IMMP1L | Q96LU5 | 480 |
| ZZEF1 | RNF222 | A6NCQ9 | 477 |
| ZZEF1 | PRRT3 | Q5FWE3 | 463 |
| ZZEF1 | TIMM21 | Q9BVV7 | 452 |
| ZZEF1 | MED31 | Q9Y3C7 | 449 |
| ZZEF1 | CCDC68 | Q9H2F9 | 445 |
| ZZEF1 | SKIL | P12756 | 431 |
| ZZEF1 | WDR54 | Q9H977 | 428 |
| ZZEF1 | ANO5 | Q75V66 | 425 |
| ZZEF1 | TMEM51 | Q9NW97 | 419 |
IntAct
179 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| GMNN | MCIDAS | psi-mi:“MI:0914”(association) | 0.770 |
| GPR156 | PLD2 | psi-mi:“MI:0914”(association) | 0.640 |
| YJU2B | RCCD1 | psi-mi:“MI:0914”(association) | 0.530 |
| DLK1 | TCAF2 | psi-mi:“MI:0914”(association) | 0.530 |
| RBFA | METTL15 | psi-mi:“MI:0914”(association) | 0.530 |
| ODAD4 | GNPAT | psi-mi:“MI:0914”(association) | 0.530 |
| SERPINA5 | ZZEF1 | psi-mi:“MI:0914”(association) | 0.530 |
| CPA6 | PPM1G | psi-mi:“MI:0914”(association) | 0.530 |
| ANGPT2 | ZZEF1 | psi-mi:“MI:0914”(association) | 0.530 |
| GAST | ZZEF1 | psi-mi:“MI:0914”(association) | 0.530 |
| FOSL2 | ZZEF1 | psi-mi:“MI:0914”(association) | 0.530 |
| CCNG1 | ZZEF1 | psi-mi:“MI:0914”(association) | 0.530 |
| ACSBG2 | ZZEF1 | psi-mi:“MI:0914”(association) | 0.530 |
| CAVIN1 | ZZEF1 | psi-mi:“MI:0914”(association) | 0.530 |
| TRMT10C | ZZEF1 | psi-mi:“MI:0914”(association) | 0.530 |
| MRPL10 | ZZEF1 | psi-mi:“MI:0914”(association) | 0.530 |
| POGLUT1 | ZZEF1 | psi-mi:“MI:0914”(association) | 0.530 |
| MRPS24 | ZZEF1 | psi-mi:“MI:0914”(association) | 0.530 |
| CHRDL1 | ZZEF1 | psi-mi:“MI:0914”(association) | 0.530 |
| PARD6B | ZZEF1 | psi-mi:“MI:0914”(association) | 0.530 |
| COPS7B | ZZEF1 | psi-mi:“MI:0914”(association) | 0.530 |
| WFDC10A | ZZEF1 | psi-mi:“MI:0914”(association) | 0.530 |
| CLEC3A | ZZEF1 | psi-mi:“MI:0914”(association) | 0.530 |
| MRPS34 | ZZEF1 | psi-mi:“MI:0914”(association) | 0.530 |
BioGRID (197): ZZEF1 (Affinity Capture-MS), ZZEF1 (Affinity Capture-MS), ZZEF1 (Affinity Capture-MS), ZZEF1 (Affinity Capture-MS), ZZEF1 (Affinity Capture-MS), ZZEF1 (Affinity Capture-MS), ZZEF1 (Affinity Capture-MS), ZZEF1 (Affinity Capture-MS), ZZEF1 (Affinity Capture-MS), ZZEF1 (Affinity Capture-MS), ZZEF1 (Affinity Capture-MS), ZZEF1 (Affinity Capture-MS), ZZEF1 (Affinity Capture-MS), ZZEF1 (Affinity Capture-MS), ZZEF1 (Affinity Capture-MS)
ESM2 similar proteins: A0JM24, A1A5R7, A2AKG8, A2CI34, D3YWQ0, F1MAB7, F6S215, O08653, O43149, O54705, O62699, P29477, P35608, P59438, P97499, Q06518, Q08DB2, Q20CR4, Q27995, Q28314, Q4R856, Q4TVR5, Q4VSN2, Q4VSN3, Q4VSN4, Q4VSN5, Q5BIW4, Q5EB20, Q5R6T6, Q5SSH7, Q5TEA3, Q5VW36, Q6NV72, Q6NXH8, Q6NXP6, Q6P996, Q6XUX0, Q6XUX1, Q6XUX2, Q6XUX3
Diamond homologs: D3ZEF4, O43149, O95714, Q14999, Q3U487, Q4U2R1, Q5RCJ3, Q5SSH7, Q5T447, Q80TT8, Q8IWT3, Q8VE73, Q9VR91, A2A5Z6, A6NED2, A9JRZ0, D3ZBM7, D3ZGQ5, E1C656, F1N6G5, F2Z461, F8W2M1, O74881, O75592, O95199, P0C5Y8, P14199, P18754, P23800, P34664, Q15034, Q1LZE1, Q24629, Q28BK1, Q2TAS2, Q3MHW0, Q3U0D9, Q4R828, Q52KW8, Q54VW7
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 177 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Mitochondrial translation initiation | 9 | 12.0× | 1e-05 |
| Mitochondrial translation elongation | 9 | 12.0× | 1e-05 |
| Mitochondrial ribosome-associated quality control | 9 | 11.6× | 1e-05 |
| Mitochondrial translation | 8 | 11.6× | 5e-05 |
| Mitochondrial translation termination | 9 | 10.4× | 3e-05 |
| rRNA processing | 6 | 9.2× | 3e-03 |
| Translation | 10 | 6.5× | 2e-04 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| mitochondrial translation | 9 | 10.6× | 2e-04 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
512 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 427 |
| Likely benign | 28 |
| Benign | 1 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
9345 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 17:4008950:AGCTC:A | acceptor_gain | 1.0000 |
| 17:4008952:CTC:C | acceptor_gain | 1.0000 |
| 17:4008953:TC:T | acceptor_gain | 1.0000 |
| 17:4008954:CC:C | acceptor_gain | 1.0000 |
| 17:4008954:CCT:C | acceptor_loss | 1.0000 |
| 17:4008955:C:A | acceptor_loss | 1.0000 |
| 17:4008955:C:CC | acceptor_gain | 1.0000 |
| 17:4008956:T:G | acceptor_loss | 1.0000 |
| 17:4009601:CA:C | donor_loss | 1.0000 |
| 17:4009602:ACCT:A | donor_loss | 1.0000 |
| 17:4009603:CC:C | donor_loss | 1.0000 |
| 17:4009753:GGTCA:G | acceptor_gain | 1.0000 |
| 17:4009755:TCA:T | acceptor_gain | 1.0000 |
| 17:4009756:CA:C | acceptor_gain | 1.0000 |
| 17:4009756:CAC:C | acceptor_gain | 1.0000 |
| 17:4009756:CACT:C | acceptor_loss | 1.0000 |
| 17:4009757:ACT:A | acceptor_loss | 1.0000 |
| 17:4009758:C:CC | acceptor_gain | 1.0000 |
| 17:4009758:CT:C | acceptor_loss | 1.0000 |
| 17:4013443:GCTTA:G | donor_loss | 1.0000 |
| 17:4013444:CTTA:C | donor_loss | 1.0000 |
| 17:4013445:TTA:T | donor_loss | 1.0000 |
| 17:4013446:TACC:T | donor_loss | 1.0000 |
| 17:4013447:ACCT:A | donor_loss | 1.0000 |
| 17:4013612:ATC:A | acceptor_gain | 1.0000 |
| 17:4013613:TC:T | acceptor_gain | 1.0000 |
| 17:4013614:CC:C | acceptor_gain | 1.0000 |
| 17:4013615:C:A | acceptor_loss | 1.0000 |
| 17:4013615:C:CC | acceptor_gain | 1.0000 |
| 17:4013620:C:CT | acceptor_gain | 1.0000 |
AlphaMissense
19470 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 17:4014128:A:G | F2792S | 1.000 |
| 17:4014167:A:G | F2779S | 1.000 |
| 17:4014179:A:G | L2775P | 1.000 |
| 17:4014368:A:G | W2765R | 1.000 |
| 17:4014368:A:T | W2765R | 1.000 |
| 17:4014433:A:G | L2743S | 1.000 |
| 17:4014484:A:G | L2726P | 1.000 |
| 17:4052008:A:G | C1855R | 1.000 |
| 17:4052033:G:C | C1846W | 1.000 |
| 17:4052035:A:G | C1846R | 1.000 |
| 17:4052075:A:C | C1832W | 1.000 |
| 17:4052076:C:T | C1832Y | 1.000 |
| 17:4052077:A:G | C1832R | 1.000 |
| 17:4054064:G:C | C1809W | 1.000 |
| 17:4054066:A:G | C1809R | 1.000 |
| 17:4054075:A:G | C1806R | 1.000 |
| 17:4054077:A:G | L1805P | 1.000 |
| 17:4054093:A:G | C1800R | 1.000 |
| 17:4054100:A:C | C1797W | 1.000 |
| 17:4054102:A:G | C1797R | 1.000 |
| 17:4054142:A:C | C1783W | 1.000 |
| 17:4054143:C:T | C1783Y | 1.000 |
| 17:4054144:A:G | C1783R | 1.000 |
| 17:4075161:A:G | F1140S | 1.000 |
| 17:4109860:A:T | V357D | 1.000 |
| 17:4014122:A:T | V2794E | 0.999 |
| 17:4014135:A:C | Y2790D | 0.999 |
| 17:4014137:C:A | G2789V | 0.999 |
| 17:4014137:C:T | G2789D | 0.999 |
| 17:4014138:C:G | G2789R | 0.999 |
dbSNP variants (sampled 300 via entrez): RS1000003314 (17:4055046 A>G), RS1000007857 (17:4034965 C>T), RS1000015306 (17:4017053 G>A), RS1000086002 (17:4011577 A>G), RS1000100248 (17:4094598 T>G), RS1000119574 (17:4127354 G>A,T), RS1000147807 (17:4049274 G>A,C), RS1000156556 (17:4027861 G>A), RS1000168291 (17:4051223 CA>C), RS1000172348 (17:4127598 C>A), RS1000174397 (17:4087915 C>T), RS1000176832 (17:4049567 A>C,G), RS1000185314 (17:4011376 C>A,T), RS1000185651 (17:4126045 T>C), RS1000199391 (17:4066654 G>A,C)
Disease associations
OMIM: gene MIM:619459 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
18 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST002188_5 | Functional impairment in major depressive disorder, bipolar disorder and schizophrenia | 5.000000e-06 |
| GCST002726_70 | Glucose homeostasis traits | 7.000000e-06 |
| GCST004773_11 | Type 2 diabetes | 3.000000e-10 |
| GCST005025_10 | Anti-saccade response | 3.000000e-06 |
| GCST006867_136 | Type 2 diabetes | 4.000000e-14 |
| GCST006979_650 | Heel bone mineral density | 5.000000e-09 |
| GCST007094_200 | Diastolic blood pressure | 1.000000e-08 |
| GCST007515_3 | Type 2 diabetes | 8.000000e-11 |
| GCST007516_29 | Type 2 diabetes (adjusted for BMI) | 2.000000e-07 |
| GCST007517_21 | Type 2 diabetes | 9.000000e-11 |
| GCST007518_28 | Type 2 diabetes (adjusted for BMI) | 8.000000e-09 |
| GCST007847_110 | Type 2 diabetes | 8.000000e-09 |
| GCST009379_174 | Type 2 diabetes | 8.000000e-07 |
| GCST009379_175 | Type 2 diabetes | 2.000000e-07 |
| GCST009379_176 | Type 2 diabetes | 4.000000e-13 |
| GCST010002_118 | Refractive error | 6.000000e-14 |
| GCST012309_4 | Schizophrenia | 2.000000e-07 |
| GCST90002401_575 | Platelet distribution width | 4.000000e-12 |
EFO canonical traits (6, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0005412 | functional impairment measurement |
| EFO:0006830 | insulin metabolic clearance rate measurement |
| EFO:0006874 | antisaccade response measurement |
| EFO:0009270 | heel bone mineral density |
| EFO:0006336 | diastolic blood pressure |
| EFO:0007984 | platelet component distribution width |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
39 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | affects methylation, decreases expression, increases methylation | 3 |
| sodium arsenite | affects cotreatment, decreases expression, increases abundance, increases expression | 2 |
| Arsenic | affects cotreatment, decreases expression, increases abundance, increases expression | 2 |
| Cisplatin | decreases expression, increases reaction | 2 |
| aristolochic acid I | increases expression | 1 |
| bisphenol F | affects cotreatment, decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | decreases methylation | 1 |
| arsenite | affects binding, decreases reaction | 1 |
| cobaltous chloride | increases expression | 1 |
| manganese chloride | affects cotreatment, decreases expression, increases abundance | 1 |
| benzo(e)pyrene | increases methylation | 1 |
| coumarin | increases phosphorylation | 1 |
| beta-methylcholine | affects expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| ICG 001 | increases expression | 1 |
| bisphenol S | affects cotreatment, decreases expression | 1 |
| jinfukang | decreases expression, increases reaction | 1 |
| (+)-JQ1 compound | increases expression | 1 |
| 4-(4-((5-(4,5-dimethyl-2-nitrophenyl)-2-furanyl)methylene)-4,5-dihydro-3-methyl-5-oxo-1H-pyrazol-1-yl)benzoic acid | increases expression | 1 |
| Sunitinib | increases expression | 1 |
| Acetaminophen | decreases expression | 1 |
| Air Pollutants | affects expression, increases abundance | 1 |
| Atrazine | decreases expression | 1 |
| Caffeine | affects phosphorylation | 1 |
| Dexamethasone | affects cotreatment, decreases expression | 1 |
| Indomethacin | affects cotreatment, decreases expression | 1 |
| Ivermectin | decreases expression | 1 |
| Manganese | decreases expression, increases abundance, affects cotreatment | 1 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.